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Aliases for WDR90 Gene

Aliases for WDR90 Gene

  • WD Repeat Domain 90 2 3 5
  • C16ORF15 3 4
  • C16orf16 3 4
  • C16orf17 3 4
  • C16orf18 3 4
  • C16orf19 3 4
  • Chromosome 16 Open Reading Frame 17 2
  • Chromosome 16 Open Reading Frame 15 2
  • Chromosome 16 Open Reading Frame 16 2
  • Chromosome 16 Open Reading Frame 19 2
  • Chromosome 16 Open Reading Frame 18 2
  • WD Repeat-Containing Protein 90 3
  • KIAA1924 4

External Ids for WDR90 Gene

Previous HGNC Symbols for WDR90 Gene

  • C16orf17
  • C16orf15
  • C16orf16
  • C16orf19
  • C16orf18

Previous GeneCards Identifiers for WDR90 Gene

  • GC16P000644
  • GC16P000645
  • GC16P000699
  • GC16P000624
  • GC16P000687
  • GC16P000688
  • GC16P000856
  • GC16P000884
  • GC16P000907
  • GC16P000927

Summaries for WDR90 Gene

GeneCards Summary for WDR90 Gene

WDR90 (WD Repeat Domain 90) is a Protein Coding gene. An important paralog of this gene is WDR62.

Additional gene information for WDR90 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDR90 Gene

Genomics for WDR90 Gene

Regulatory Elements for WDR90 Gene

Enhancers for WDR90 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H001308 1.4 ENCODE dbSUPER 214.6 +661.4 661444 5.2 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 SP3 MCM3 NFYC WDR90 CRAMP1 ENSG00000261505 TELO2 UBE2I E4F1 TSC2 ENSG00000260051 JMJD8 RHOT2
GH16H001271 1.1 ENCODE 248 +622.5 622516 1.6 PKNOX1 SIN3A FEZF1 ZNF2 ZNF302 ZNF416 SP3 REST ZNF662 ZNF592 CRAMP1 WDR90 TELO2 IFT140 ENSG00000261505 TSC2 E4F1 WDR24 ENSG00000260646 UBE2I
GH16H000323 2 FANTOM5 Ensembl ENCODE dbSUPER 75.8 -322.9 -322879 5.3 PKNOX1 ARNT SIN3A FEZF1 ZNF2 YY1 ZNF766 ZNF416 ZNF207 FOS WDR90 LUC7L JMJD8 UBE2I ENSG00000228779 ENSG00000261505 RHOT2 WDR24 ENSG00000262528 MPG
GH16H000586 1.7 FANTOM5 ENCODE dbSUPER 87.8 -58.2 -58180 8.4 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 WDR90 ENSG00000260051 WFIKKN1 ENSG00000261505 WDR24 WASH4P RHOT2 TELO2 UBE2I ENSG00000260954
GH16H000981 1.2 ENCODE dbSUPER 94.5 +332.2 332165 0.2 ZNF493 ZNF133 GLI4 ZNF2 GLIS2 ZNF416 KLF7 ZNF548 SP3 MCM3 WDR90 CRAMP1 ENSG00000261505 UBE2I JMJD8 TELO2 ENSG00000260954 UNKL ENSG00000260051 WDR24
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WDR90 on UCSC Golden Path with GeneCards custom track

Promoters for WDR90 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000082220 89 1201 MLX ARID4B SIN3A DMAP1 YY1 ZNF143 PAF1 SP3 SP5 ZHX2

Genomic Locations for WDR90 Gene

Genomic Locations for WDR90 Gene
chr16:649,311-667,833
(GRCh38/hg38)
Size:
18,523 bases
Orientation:
Plus strand
chr16:699,311-717,833
(GRCh37/hg19)

Genomic View for WDR90 Gene

Genes around WDR90 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WDR90 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WDR90 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDR90 Gene

Proteins for WDR90 Gene

  • Protein details for WDR90 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96KV7-WDR90_HUMAN
    Recommended name:
    WD repeat-containing protein 90
    Protein Accession:
    Q96KV7
    Secondary Accessions:
    • Q0VA87
    • Q0VA88
    • Q6P048
    • Q6ZMS1
    • Q6ZTH1
    • Q8N202
    • Q8N221
    • Q8NBB8
    • Q96PW4
    • Q96S18

    Protein attributes for WDR90 Gene

    Size:
    1748 amino acids
    Molecular mass:
    187437 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAK61239.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=BAB67817.1; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305}; Sequence=BAC03575.1; Type=Miscellaneous discrepancy; Note=Unlikely isoform. Aberrant splicing.; Evidence={ECO:0000305}; Sequence=BAC04225.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAC04225.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305}; Sequence=BAD18654.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305}; Sequence=EAW85775.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for WDR90 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for WDR90 Gene

Post-translational modifications for WDR90 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for WDR90 Gene

Domains & Families for WDR90 Gene

Gene Families for WDR90 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted secreted proteins

Suggested Antigen Peptide Sequences for WDR90 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with WDR90: view

No data available for UniProtKB/Swiss-Prot for WDR90 Gene

Function for WDR90 Gene

Phenotypes From GWAS Catalog for WDR90 Gene

Gene Ontology (GO) - Molecular Function for WDR90 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with WDR90: view
genes like me logo Genes that share phenotypes with WDR90: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WDR90 Gene

Localization for WDR90 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for WDR90 gene
Compartment Confidence
nucleus 3
plasma membrane 1
mitochondrion 1
peroxisome 1
cytosol 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nuclear speckles (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for WDR90 Gene

Pathways & Interactions for WDR90 Gene

SuperPathways for WDR90 Gene

No Data Available

Gene Ontology (GO) - Biological Process for WDR90 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WDR90 Gene

Drugs & Compounds for WDR90 Gene

No Compound Related Data Available

Transcripts for WDR90 Gene

Unigene Clusters for WDR90 Gene

WD repeat domain 90:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for WDR90 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14a · 14b · 14c ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^
SP1:
SP2:
SP3:
SP4:
SP5: - -
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:

ExUns: 21a · 21b ^ 22a · 22b ^ 23 ^ 24 ^ 25 ^ 26 ^ 27a · 27b ^ 28 ^ 29 ^ 30a · 30b ^ 31 ^ 32a · 32b · 32c ^ 33 ^ 34a · 34b · 34c ^ 35a · 35b ^ 36
SP1: - -
SP2: -
SP3:
SP4:
SP5:
SP6: -
SP7:
SP8:
SP9:
SP10: - -
SP11:
SP12:
SP13:

Relevant External Links for WDR90 Gene

GeneLoc Exon Structure for
WDR90
ECgene alternative splicing isoforms for
WDR90

Expression for WDR90 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WDR90 Gene

mRNA differential expression in normal tissues according to GTEx for WDR90 Gene

This gene is overexpressed in Testis (x4.2).

Protein differential expression in normal tissues from HIPED for WDR90 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for WDR90 Gene



Protein tissue co-expression partners for WDR90 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of WDR90 Gene:

WDR90

SOURCE GeneReport for Unigene cluster for WDR90 Gene:

Hs.511903

Evidence on tissue expression from TISSUES for WDR90 Gene

  • Nervous system(3)
genes like me logo Genes that share expression patterns with WDR90: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for WDR90 Gene

Orthologs for WDR90 Gene

This gene was present in the common ancestor of animals.

Orthologs for WDR90 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia WDR90 33 34
  • 97.7 (n)
cow
(Bos Taurus)
Mammalia WDR90 33 34
  • 77.64 (n)
rat
(Rattus norvegicus)
Mammalia LOC102555298 33
  • 76.36 (n)
mouse
(Mus musculus)
Mammalia Wdr90 33 16 34
  • 75.62 (n)
dog
(Canis familiaris)
Mammalia WDR90 33 34
  • 75.15 (n)
oppossum
(Monodelphis domestica)
Mammalia WDR90 34
  • 56 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia WDR90 34
  • 53 (a)
OneToOne
chicken
(Gallus gallus)
Aves WDR90 34
  • 60 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia WDR90 34
  • 51 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia wdr90 33
  • 60.97 (n)
zebrafish
(Danio rerio)
Actinopterygii wdr90 33 34
  • 55.28 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG10064 34
  • 18 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 33 (a)
OneToOne
Species where no ortholog for WDR90 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for WDR90 Gene

ENSEMBL:
Gene Tree for WDR90 (if available)
TreeFam:
Gene Tree for WDR90 (if available)

Paralogs for WDR90 Gene

Paralogs for WDR90 Gene

genes like me logo Genes that share paralogs with WDR90: view

Variants for WDR90 Gene

Sequence variations from dbSNP and Humsavar for WDR90 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000045050 -- 651,541(+) AGAGC(C/T)GGTGA intron-variant
rs1000168162 -- 660,439(+) TCCTG(G/T)CCCTG intron-variant, upstream-variant-2KB
rs1000617492 -- 664,765(+) AGCTC(C/T)GCCTC intron-variant
rs1000643825 -- 657,763(+) ACAGC(A/G)GACAT reference, synonymous-codon, utr-variant-5-prime
rs1000694650 -- 657,590(+) CCCTG(A/G)CAGCG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for WDR90 Gene

Variant ID Type Subtype PubMed ID
nsv952898 CNV deletion 24416366
nsv9321 CNV gain+loss 18304495
nsv833114 CNV gain+loss 17160897
nsv827479 CNV gain 20364138
nsv571016 CNV loss 21841781
nsv571012 CNV loss 21841781
nsv526903 CNV loss 19592680
nsv516590 CNV loss 19592680
nsv471065 CNV gain 18288195
nsv471063 CNV loss 18288195
nsv457310 CNV loss 19166990
nsv1160326 CNV duplication 26073780
nsv1160325 CNV duplication 26073780
nsv103377 CNV deletion 16902084
esv3637581 CNV loss 21293372
esv2750223 CNV deletion 23290073
esv2750222 CNV deletion 23290073
esv2750221 CNV deletion 23290073
esv2750220 CNV deletion 23290073
esv2422427 CNV duplication 17116639
esv1011191 CNV deletion 20482838
dgv4826n54 CNV loss 21841781
dgv4825n54 CNV loss 21841781
dgv4824n54 CNV loss 21841781
dgv4823n54 CNV loss 21841781
dgv334n27 CNV loss 19166990

Variation tolerance for WDR90 Gene

Residual Variation Intolerance Score: 93.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 15.39; 97.11% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for WDR90 Gene

Human Gene Mutation Database (HGMD)
WDR90
SNPedia medical, phenotypic, and genealogical associations of SNPs for
WDR90

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for WDR90 Gene

Disorders for WDR90 Gene

Relevant External Links for WDR90

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WDR90

No disorders were found for WDR90 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WDR90 Gene

Publications for WDR90 Gene

  1. Sequence, structure and pathology of the fully annotated terminal 2 Mb of the short arm of human chromosome 16. (PMID: 11157797) Daniels RJ … Higgs DR (Human molecular genetics 2001) 2 3 4 60
  2. Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins. (PMID: 11572484) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2001) 2 3 4 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  5. Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes. (PMID: 25281560) Lambert JP … Gingras AC (Journal of proteomics 2015) 3 60

Products for WDR90 Gene

Sources for WDR90 Gene

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