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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

WDR89 Gene

protein-coding GIFtS: 39
GCID: GC14M064063

WD repeat domain 89

(Previous symbol: C14orf150)

Search for WDR89
in

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
WD Repeat Domain 89¹ ²
C14orf150¹ ² ³
MGC9907¹
WD Repeat-Containing Protein 89²

External Ids:	HGNC: 20489¹	Entrez Gene: 112840²	Ensembl: ENSG00000140006⁷	UniProtKB: Q96FK6³

Export aliases for WDR89 gene to outside databases

Previous GC identifers: GC14M063135 GC14M044230

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000014.8 NC_018925.1 NT_026437.12

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the WDR89 gene promoter:
N-Myc CBF-B CP1A NF-Y CBF-C CBF(2)
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: WDR89 promoter sequence

Search SABiosciences Chromatin IP Primers for WDR89

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat WDR89

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q23.2 Ensembl cytogenetic band: 14q23.2 HGNC cytogenetic band: 14q23.2

WDR89 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
WDR89 gene location

GeneLoc information about chromosome 14 GeneLoc Exon Structure

GeneLoc location for GC14M064063: view genomic region (about GC identifiers)

Start:	64,063,757 bp from pter	End:	64,108,591 bp from pter
Size:	44,835 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: WDR89_HUMAN, Q96FK6 (See protein sequence)

Recommended Name: WD repeat-containing protein 89

Size: 387 amino acids; 43215 Da

Explore the universe of human proteins at neXtProt for WDR89: NX_Q96FK6

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q96FK6

WDR89 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (3 alternative transcripts):

NP_001008726.1 NP_001245201.1 NP_542397.1

ENSEMBL proteins:

ENSP00000378399 ENSP00000267522 ENSP00000451702

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

WDR89 for domains About GeneDecksing

3 InterPro domains/families:

IPR001680 WD40_repeat

IPR017986 WD40_repeat_dom

IPR015943 WD40/YVTN_repeat-like_dom

Graphical View of Domain Structure for InterPro Entry Q96FK6

ProtoNet protein and cluster: Q96FK6

UniProtKB/Swiss-Prot: WDR89_HUMAN, Q96FK6

Similarity: Contains 6 WD repeats

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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In Situ Assay
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for WDR89

STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

5/9 Interacting proteins for WDR89 (Q96FK6³ ENSP00000267522⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 9)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
GCOM1	P0CAP1³, ENSP00000369943⁴	I2D: score=3 STRING: ENSP00000369943
MYZAP	P0CAP1³	I2D: score=3
PHYHIP	Q92561³	I2D: score=4
POLR3F	Q9H1D9³	I2D: score=4
POLR2M	P0CAP2³	I2D: score=3

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for WDR89
Search CenterWatch for drugs/clinical trials and news about WDR89

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for WDR89 gene (3 alternative transcripts):

NM_001008726.2 NM_001258272.1 NM_080666.3

Unigene Clusters for WDR89:

WD repeat domain 89

Hs.655666 [show with all ESTs], Hs.741323 [show with all ESTs]

Unigene Representative Sequences: NM_001258272, BC010698

3 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000394942(uc001xgh.3 uc001xgi.3) ENST00000267522 ENST00000554717

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		8 QIAGEN miScript miRNA Assays for microRNAs that regulate WDR89:
		hsa-miR-3163 hsa-miR-627 hsa-miR-29a* hsa-miR-545 hsa-miR-590-3p hsa-miR-497* hsa-miR-138-2* hsa-miR-4282

		SwitchGear 3'UTR luciferase reporter plasmid: WDR89 3' UTR sequence

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Additional cDNA sequence:

AF115513.1 AK095324.1 BC010698.1 BX248008.1

5 DOTS entries:

DT.40109688 DT.112187 DT.100021860 DT.100731932 DT.102826390

24/86 AceView cDNA sequences (see all 86):

BM984705 BI712118 CR620350 AW270921 F12991 BX248008 AL697802 BF939125

NM_080666 BM455157 BE219560 AA318958 R17617 BC010698 BM455141 AI806289

AK095324 BI713072 N39428 AW873519 AF115513 F10586 CR590052 AA587774

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

WDR89 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CTGAACTCTT

About this image
See WDR89 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for WDR89

SOURCE GeneReport for Unigene clusters: Hs.655666 Hs.741323

SABiosciences Custom PCR Arrays for WDR89

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of eukaryotes.

Orthologs for WDR89 gene from 9/28 species (see all 28) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Wdr89^{1 , 5}	WD repeat domain 89^{1, 5}	81.26(n)¹ 81.09(a)¹		12 (32.89 cM)⁵ 72338¹ NM_028203.1¹ NP_082479.1¹ 75630594⁵
chicken (Gallus gallus)	Aves	WDR89¹	WD repeat domain 89	67.1(n) 63.64(a)		423510 XM_421411.3 XP_421411.2
lizard (Anolis carolinensis)	Reptilia	WDR89⁶	--	64(a)	1 ↔ 1	1(2185321-2186469)
African clawed frog (Xenopus laevis)	Amphibia	Xl.17137²	Xenopus laevis transcribed sequence with weak similarity to protein refNP_542397.1 (H.sapiens) hypothetical protein MGC9907 [Homo sapiens] less	72.83(n)		CA980975.1
zebrafish (Danio rerio)	Actinopterygii	LOC100148281¹	novel protein similar to H.sapiens WDR89, WD repeat domain 89 (WDR89) less	53.24(n) 43.78(a)		100148281 NM_001167958.1 NP_001161430.1
fruit fly (Drosophila melanogaster)	Insecta	CG12134¹	CG12134	44.52(n) 33.22(a)		36038 NM_136698.2 NP_610542.1
baker's yeast (Saccharomyces cerevisiae)	Saccharomycetes	(YNL035C)⁴ YNL035C¹	Putative protein of unknown function with similarity to proteins containing WD-40 domains; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YNL035C is not an essential gene less⁴ hypothetical protein¹	42.39(n)¹ 34.95(a)¹		14(569691-568522)⁴ 855695^{1, 4} NP_014363.1^{1, 4}
thale cress (Arabidopsis thaliana)	eudicotyledons	AT2G47790¹	transducin/WD-40 repeat-containing protein	47.55(n) 32.97(a)		819391 NM_130346.4 NP_566111.1
rice (Oryza sativa)	Liliopsida	Os12g0294100¹	hypothetical protein	48.3(n) 32.34(a)		4352026 NM_001073143.1 NP_001066611.1

ENSEMBL Gene Tree for WDR89 (if available)
TreeFam Gene Tree for WDR89 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for WDR89 gene

WDR89 for paralogs About GeneDecksing

1 Pseudogenes.org Pseudogene for WDR89
PGOHUM00000234867

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 14 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs116558578^1,2	F,	--	64063269(+)	`ACAGCC/TTGACT`	3	--	int¹		2		WA NA	238
rs117893154^1,2	F,	--	64063429(+)	`TATTTG/CCTGCA`	3	--	int¹		1		NA	120
rs138592030^1,2		--	64063432(+)	`TTGCTG/TCATGA`	3	--	int¹		0	--	--	--	--
rs186368826^1,2		--	64063496(+)	`GGCATC/TGATCC`	3	--	int¹		0	--	--	--	--
rs143981190^1,2		--	64063611(+)	`TGAAAC/TTTCAC`	3	--	int¹		0	--	--	--	--
rs56080829^1,2	C,F,	--	64063689(+)	`AAAGAT/CTGAAG`	3	--	int¹		3		WA CSA	122
rs76574217^1,2	F,	--	64063691(+)	`AGATTG/AAAGTT`	3	--	int¹		1		WA	118
rs190915792^1,2		--	64063729(+)	`TTCACA/GCTCTA`	3	--	int¹		0	--	--	--	--
rs147301071^1,2		--	64063841(+)	`GGAACA/GCAAAG`	3	--	ut3¹		0	--	--	--	--
rs139729260^1,2		--	64063852(+)	`GGGAAG/TCAAAG`	3	--	ut3¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for WDR89 (64063757 - 64108591 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for WDR89: --

SABiosciences Cancer Mutation PCR Assays

Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing WDR89

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for WDR89 gene, integrated from 9 sources (see all 12):
(articles sorted by number of sources associating them with WDR89)

Utopia: connect your pdf to the dynamic
world of online information

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)¹ Kim W....Gygi S.P. (2011)
Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)¹ OlA!h J....OvA!di J. (2011)
Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)¹ Barbe L....Andersson-Svahn H. (2008)
hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)¹ Lamesch P.... Vidal M. (2007)
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)¹ Kimura K.... Sugano S. (2006)
A human protein-protein interaction network: a resource for annotating the proteome. (PubMed id 16169070)¹ Stelzl U.... Wanker E.E. (2005)
Nucleolar proteome dynamics. (PubMed id 15635413)¹ Andersen J.S....Mann M. (2005)
Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556)¹ Suzuki Y.... Sugano S. (2004)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 112840	HGNC: 20489	AceView: C14orf150	Ensembl:ENSG00000140006	euGenes: HUgn112840
ECgene: WDR89	H-InvDB: WDR89

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for WDR89	Pharmacogenomics, SNPs, Pathways

Intellectual Property for WDR89 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for WDR89 gene:
Search GeneIP for patents involving WDR89

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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Advanced Cell Diagnostics
About This Section


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GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
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The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes WDR89 gene at Home site.

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WDR89 Gene

WD repeat domain 89

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WDR89 Gene

WD repeat domain 89

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