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Aliases for WDR86-AS1 Gene

Subcategory (RNA class) for WDR86-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for WDR86-AS1 Gene

  • WDR86 Antisense RNA 1 2 3 5
  • WDR86 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for WDR86-AS1 Gene

Previous GeneCards Identifiers for WDR86-AS1 Gene

  • GC07P151108

Summaries for WDR86-AS1 Gene

GeneCards Summary for WDR86-AS1 Gene

WDR86-AS1 (WDR86 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDR86-AS1 Gene

Genomics for WDR86-AS1 Gene

Regulatory Elements for WDR86-AS1 Gene

Enhancers for WDR86-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F151365 1.3 Ensembl ENCODE 12.1 -42.0 -41996 3.5 HDGF PKNOX1 ATF1 MLX ARNT ARID4B SIN3A DMAP1 ZNF48 ZNF2 WDR86 WDR86-AS1 CRYGN ENSG00000241456 RHEB SMARCD3 LOC105375569 NUB1 GC07M151365 GC07P151348
GH07F151379 1.2 Ensembl ENCODE 12.8 -27.8 -27818 3.2 HDGF PKNOX1 KLF17 SIN3A YBX1 ZNF2 RAD21 ZNF335 GLIS2 ZNF366 WDR86 WDR86-AS1 ENSG00000241456 CRYGN SMARCD3 LOC105375569 NUB1 GC07M151365 PIR52552
GH07F151424 1.3 Ensembl ENCODE 7.9 +18.7 18682 6.5 HDGF ARNT SIN3A ARID4B FEZF1 ZNF2 ZNF143 FOS ZNF263 REST ENSG00000244151 WDR86 ENSG00000241456 CRYGN WDR86-AS1 MIR3907
GH07F151503 1.2 Ensembl ENCODE 6.7 +95.4 95394 2.9 PKNOX1 ARID4B SIN3A YY1 FOS MAFF RCOR2 STAT3 KDM1A BACH1 WDR86-AS1 ETF1P2 RHEB
GH07F151415 1.2 Ensembl ENCODE 5.8 +7.3 7279 1.9 ATF1 PKNOX1 SIN3A FEZF1 YY1 ZNF121 GATA2 FOS ZNF263 JUNB WDR86 WDR86-AS1 ENSG00000241456
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WDR86-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for WDR86-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001565029 739 1801 ELF3 PKNOX1 ZNF76 KLF17 ZNF2 RAD21 RARA GLIS2 KLF7 EGR2

Genomic Location for WDR86-AS1 Gene

Chromosome:
7
Start:
151,409,161 bp from pter
End:
151,413,354 bp from pter
Size:
4,194 bases
Orientation:
Plus strand

Genomic View for WDR86-AS1 Gene

Genes around WDR86-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WDR86-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WDR86-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDR86-AS1 Gene

Proteins for WDR86-AS1 Gene

Post-translational modifications for WDR86-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WDR86-AS1 Gene

Domains & Families for WDR86-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WDR86-AS1 Gene

Function for WDR86-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WDR86-AS1 Gene

Localization for WDR86-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for WDR86-AS1 Gene

Pathways & Interactions for WDR86-AS1 Gene

SuperPathways for WDR86-AS1 Gene

No Data Available

Interacting Proteins for WDR86-AS1 Gene

Gene Ontology (GO) - Biological Process for WDR86-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WDR86-AS1 Gene

Transcripts for WDR86-AS1 Gene

mRNA/cDNA for WDR86-AS1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for WDR86-AS1 Gene

WDR86 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for WDR86-AS1 Gene

No ASD Table

Relevant External Links for WDR86-AS1 Gene

GeneLoc Exon Structure for
WDR86-AS1
ECgene alternative splicing isoforms for
WDR86-AS1

Expression for WDR86-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for WDR86-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for WDR86-AS1 Gene

This gene is overexpressed in Spleen (x8.2), Cervix - Endocervix (x6.9), Fallopian Tube (x4.9), and Thyroid (x4.3).

SOURCE GeneReport for Unigene cluster for WDR86-AS1 Gene:

Hs.659231
genes like me logo Genes that share expression patterns with WDR86-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for WDR86-AS1 Gene

Orthologs for WDR86-AS1 Gene

Evolution for WDR86-AS1 Gene

ENSEMBL:
Gene Tree for WDR86-AS1 (if available)
TreeFam:
Gene Tree for WDR86-AS1 (if available)

No data available for Orthologs for WDR86-AS1 Gene

Paralogs for WDR86-AS1 Gene

No data available for Paralogs for WDR86-AS1 Gene

Variants for WDR86-AS1 Gene

Sequence variations from dbSNP and Humsavar for WDR86-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10229221 -- 151,413,021(+) attac(A/G)tgaga intron-variant, nc-transcript-variant
rs10229364 -- 151,413,136(+) caatg(A/C)tgttc intron-variant
rs10250377 -- 151,410,953(+) GTGGC(A/C)TAACC intron-variant, upstream-variant-2KB
rs10259485 -- 151,413,495(+) ACCTC(A/G)CAGAG downstream-variant-500B
rs10274357 -- 151,412,944(+) agtga(A/T)gacat intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for WDR86-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3695n106 OTHER inversion 24896259
nsv1067934 OTHER inversion 25765185
nsv1151906 OTHER inversion 26484159

Relevant External Links for WDR86-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WDR86-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WDR86-AS1 Gene

Disorders for WDR86-AS1 Gene

Relevant External Links for WDR86-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WDR86-AS1

No disorders were found for WDR86-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WDR86-AS1 Gene

Publications for WDR86-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for WDR86-AS1 Gene

Sources for WDR86-AS1 Gene

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