WDR83OS Gene
protein-coding GIFtS: 40
GCID: GC19M012779
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WD repeat domain 83 opposite strand(Previous name: chromosome 19 open reading frame 56 )
(Previous symbol: C19orf56)
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Aliases
for WDR83OS gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| WD Repeat Domain 83 Opposite Strand1 2 3 | | Chromosome 19 Open Reading Frame 561 | | C19orf561 2 | | Protein Asterix2 | | PTD0081 2 | | UPF0139 Membrane Protein C19orf562 | | WDR83 Opposite Strand2 3 | | |
Export aliases for WDR83OS gene to outside databases |
Summaries
for WDR83OS gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for WDR83OS gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000019.9 NC_018930.1 NT_011295.11
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for WDR83OS
Other transcription factors
Search SABiosciences Chromatin IP Primers for WDR83OS
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat WDR83OS |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 19p13.2 Ensembl cytogenetic band: 19p13.2 HGNC cytogenetic band: 19p13.2WDR83OS Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19M012779: view genomic region
(about GC identifiers)
Start:
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12,778,881 bp from pter |
End:
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12,780,465 bp from pter |
Size:
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1,585 bases |
Orientation:
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minus strand |
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Proteins
for WDR83OS gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: ASTER_HUMAN, Q9Y284 (See
protein sequence)Recommended Name: Protein Asterix Size: 106 amino acids; 12068 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Secondary accessions: B2R4T8 Q9BVI3Explore the universe of human proteins at neXtProt for WDR83OS: NX_Q9Y284
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9Y284
WDR83OS Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_057229.1
ENSEMBL proteins: ENSP00000222190
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016021 | integral to membrane |
IEA | -- |
WDR83OS for ontologies About GeneDecksing
WDR83OS Antibody Products:
Assay Products for WDR83OS: |
Protein
Domains /
Families
for WDR83OS gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
WDR83OS for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q9Y284ProtoNet protein and cluster: Q9Y284 1 Blocks protein family: IPB005351 Protein of unknown function UPF0139
UniProtKB/Swiss-Prot: ASTER_HUMAN, Q9Y284Similarity: Belongs to the Asterix family |
Function
for WDR83OS gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for WDR83OS (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for WDR83OS
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
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Synthesis Service for WDR83OS | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat WDR83OS |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for WDR83OS |
1 GenomeRNAi human phenotype for WDR83OS:
|
Pathways & Interactions
for WDR83OS gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for WDR83OS
1 Interacting protein for WDR83OS (Q9Y2843) via UniProtKB, MINT, STRING, and/or I2DAbout this table
|
Drugs & Compounds
for WDR83OS gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for WDR83OS
Search CenterWatch for drugs/clinical trials and news about WDR83OS / ASTER
|
Transcripts
for WDR83OS gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for WDR83OS gene: NM_016145.3 Unigene Cluster for WDR83OS: WD repeat domain 83 opposite strand Hs.108969 [show with all ESTs]Unigene Representative Sequence: BU5067661 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000222190(uc002mud.2)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for WDR83OS (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for WDR83OS
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript Custom all cDNA clones Services for WDR83OS | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for WDR83OS | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat WDR83OS |
Additional cDNA sequence: AF059620.1 AF078861.1 AF151898.1 AK311944.1 BC001192.1 BC042919.1 BC061912.1 18 DOTS entries: DT.120292 DT.121449434 DT.100829411 DT.455210 DT.100868759 DT.87016627 DT.95224094 DT.100038904 DT.121449252 DT.100868760 DT.101979173 DT.92439192 DT.100038909 DT.121449223 DT.92439189 DT.92439194 DT.121449421 DT.91724126 24/935 AceView cDNA sequences (see all 935): BU625187 BU786289 BQ932096 BM978356 BI521566 BU785357 BM854658 BC042919 BM822545 AU280820 BM783508 N33887 BI063058 BQ440261 BM451386 BM843971 AU130127 BQ010260 CB051491 BU553831 CB306579 AA888906 BU931269 BM783587
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for WDR83OS About this scheme
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b |
|---|
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| SP1: | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | |
ECgene alternative splicing isoforms for WDR83OS
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Expression
for WDR83OS gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| WDR83OS expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TTTCTAGGGG
About this image
See WDR83OS Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for WDR83OS
SOURCE GeneReport for Unigene cluster: Hs.108969
SABiosciences Custom PCR Arrays for WDR83OS
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for WDR83OS
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat WDR83OS | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat WDR83OS | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat WDR83OS | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for WDR83OS |
Orthologs
for WDR83OS gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for WDR83OS gene from 6/18 species (see all 18) About this table
ENSEMBL Gene Tree for WDR83OS (if available)
TreeFam Gene Tree for WDR83OS (if available) |
Paralogs
for WDR83OS gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for WDR83OS gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 19 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for WDR83OS (12778881 - 12780465 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for WDR83OS: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing WDR83OS |
|
Disorders
/ Diseases
for WDR83OS gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for WDR83OS gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for WDR83OS gene integrated from 9 sources:
(articles sorted by number of sources associating them with WDR83OS) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PubMed id 10810093)1, 2, 3 Lai C.H....Lin W. (2000)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Identification of novel ATP13A2 interactors and their role in a-synuclein misfolding and toxicity. (PubMed id 22645275)1 Usenovic M....Krainc D. (2012)
- hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)
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External Searches for WDR83OS gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
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Genome Databases showing WDR83OS gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing WDR83OS gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing WDR83OS gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for WDR83OS | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for WDR83OS gene:
Search GeneIP for patents involving WDR83OS
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for WDR83OS gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for WDR83OS | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for WDR83OS | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for WDR83OS | | | OriGene Protein Over-expression Lysate for WDR83OS | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for WDR83OS | | OriGene 3'-UTR Clone for WDR83OS | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for WDR83OS | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for WDR83OS | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat WDR83OS | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing WDR83OS | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat WDR83OS | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat WDR83OS | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat WDR83OS | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat WDR83OS |
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 | | | WDR83OS Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for WDR83OS |
|  |  |  | | | | Search ThermoFisher Antibodies for WDR83OS |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat WDR83OS |
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