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Aliases for WDR83OS Gene

Aliases for WDR83OS Gene

  • WD Repeat Domain 83 Opposite Strand 2 3 4 5
  • WDR83 Opposite Strand 3 4
  • C19orf56 3 4
  • Chromosome 19 Open Reading Frame 56 2
  • UPF0139 Membrane Protein C19orf56 3
  • Protein Asterix 3
  • PTD008 3

External Ids for WDR83OS Gene

Previous HGNC Symbols for WDR83OS Gene

  • C19orf56

Previous GeneCards Identifiers for WDR83OS Gene

  • GC19M012779

Summaries for WDR83OS Gene

GeneCards Summary for WDR83OS Gene

WDR83OS (WD Repeat Domain 83 Opposite Strand) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDR83OS Gene

Genomics for WDR83OS Gene

Regulatory Elements for WDR83OS Gene

Enhancers for WDR83OS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G012781 1.9 FANTOM5 ENCODE dbSUPER 43.2 -117.9 -117942 16.0 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 ZNF136 ZNF844 CCDC130 ZNF564 ZNF442 ZNF625 MRI1 ZNF44 C19orf43 WDR83OS
GH19G012983 2 FANTOM5 Ensembl ENCODE dbSUPER 30.5 -313.4 -313447 3.2 HDGF FOXA2 PKNOX1 MLX CREB3L1 ARNT AGO1 SIN3A ARID4B DMAP1 ZNF625 ZNF136 ZNF844 ZNF442 ZNF788 ENSG00000242615 ZNF709 ZNF799 ZNF564 CCDC130
GH19G013115 1.8 FANTOM5 ENCODE dbSUPER 31.5 -447.6 -447580 7.7 CREB3L1 DMAP1 YBX1 YY1 ZNF143 SP3 NFYC TBX21 MEF2D ZNF610 CCDC130 WDR83OS ZNF791 ZNF564 ZNF44 ZNF136 MRI1 TRMT1 ZNF799 RFX1
GH19G012880 2 FANTOM5 Ensembl ENCODE dbSUPER 27 -212.2 -212206 6.1 CREB3L1 MLX AGO1 ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SP3 ZNF136 ZNF791 DNASE2 ZNF44 ZNF844 ZNF442 TRMT1 ZNF700 CCDC130 WDR83OS
GH19G013160 2.1 FANTOM5 Ensembl ENCODE dbSUPER 25.7 -495.9 -495940 13.8 MLX AGO1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC CCDC130 ZNF44 ZNF799 ZNF791 WDR83OS ZNF564 TRMT1 C19orf43 ZNF709 ZNF442
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WDR83OS on UCSC Golden Path with GeneCards custom track

Promoters for WDR83OS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000287480 51 1601 HDGF FOXA2 PKNOX1 ARNT AGO1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1

Genomic Location for WDR83OS Gene

Chromosome:
19
Start:
12,668,067 bp from pter
End:
12,671,356 bp from pter
Size:
3,290 bases
Orientation:
Minus strand

Genomic View for WDR83OS Gene

Genes around WDR83OS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WDR83OS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WDR83OS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDR83OS Gene

Proteins for WDR83OS Gene

  • Protein details for WDR83OS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y284-ASTER_HUMAN
    Recommended name:
    Protein Asterix
    Protein Accession:
    Q9Y284
    Secondary Accessions:
    • B2R4T8
    • Q9BVI3

    Protein attributes for WDR83OS Gene

    Size:
    106 amino acids
    Molecular mass:
    12068 Da
    Quaternary structure:
    No Data Available

neXtProt entry for WDR83OS Gene

Post-translational modifications for WDR83OS Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for WDR83OS Gene

No data available for DME Specific Peptides for WDR83OS Gene

Domains & Families for WDR83OS Gene

Protein Domains for WDR83OS Gene

Suggested Antigen Peptide Sequences for WDR83OS Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y284

UniProtKB/Swiss-Prot:

ASTER_HUMAN :
  • Belongs to the Asterix family.
Family:
  • Belongs to the Asterix family.
genes like me logo Genes that share domains with WDR83OS: view

No data available for Gene Families for WDR83OS Gene

Function for WDR83OS Gene

Phenotypes for WDR83OS Gene

genes like me logo Genes that share phenotypes with WDR83OS: view

Animal Model Products

  • Taconic Biosciences Mouse Models for WDR83OS

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for WDR83OS Gene

Localization for WDR83OS Gene

Subcellular locations from UniProtKB/Swiss-Prot for WDR83OS Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for WDR83OS gene
Compartment Confidence
extracellular 2
plasma membrane 1
peroxisome 1
nucleus 1
cytosol 1

Gene Ontology (GO) - Cellular Components for WDR83OS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with WDR83OS: view

Pathways & Interactions for WDR83OS Gene

SuperPathways for WDR83OS Gene

No Data Available

Interacting Proteins for WDR83OS Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000468969%0d%0a9606.ENSP00000327214%0d%0a
Selected Interacting proteins: Q9Y284-ASTER_HUMAN ENSP00000468969 for WDR83OS Gene via IID STRING

Gene Ontology (GO) - Biological Process for WDR83OS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WDR83OS Gene

Drugs & Compounds for WDR83OS Gene

No Compound Related Data Available

Transcripts for WDR83OS Gene

Unigene Clusters for WDR83OS Gene

WD repeat domain 83 opposite strand:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for WDR83OS Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b
SP1:
SP2:

Relevant External Links for WDR83OS Gene

GeneLoc Exon Structure for
WDR83OS
ECgene alternative splicing isoforms for
WDR83OS

Expression for WDR83OS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WDR83OS Gene

Protein differential expression in normal tissues from HIPED for WDR83OS Gene

This gene is overexpressed in Breast (56.1) and Pancreas (12.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for WDR83OS Gene



Protein tissue co-expression partners for WDR83OS Gene

NURSA nuclear receptor signaling pathways regulating expression of WDR83OS Gene:

WDR83OS

SOURCE GeneReport for Unigene cluster for WDR83OS Gene:

Hs.108969

Evidence on tissue expression from TISSUES for WDR83OS Gene

  • Eye(4.3)
  • Intestine(4.3)
  • Liver(4.3)
  • Nervous system(4.3)
  • Thyroid gland(2)
genes like me logo Genes that share expression patterns with WDR83OS: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for WDR83OS Gene

Orthologs for WDR83OS Gene

This gene was present in the common ancestor of animals.

Orthologs for WDR83OS Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia WDR83OS 34 35
  • 100 (n)
cow
(Bos Taurus)
Mammalia WDR83OS 34 35
  • 93.71 (n)
dog
(Canis familiaris)
Mammalia WDR83OS 34 35
  • 93.08 (n)
mouse
(Mus musculus)
Mammalia BC056474 34 35
  • 91.82 (n)
Wdr83os 16
oppossum
(Monodelphis domestica)
Mammalia WDR83OS 35
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia WDR83OS 35
  • 82 (a)
OneToOne
chicken
(Gallus gallus)
Aves WDR83OS 35
  • 89 (a)
OneToOne
C19ORF56 34
  • 82.84 (n)
lizard
(Anolis carolinensis)
Reptilia WDR83OS 35
  • 82 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia wdr83os 34
  • 76.1 (n)
zebrafish
(Danio rerio)
Actinopterygii WDR83OS 35
  • 88 (a)
OneToOne
zgc:73111 34
  • 76.1 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG10674 34 35
  • 66.33 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007000 34
  • 64.31 (n)
worm
(Caenorhabditis elegans)
Secernentea K10B2.4 34 35
  • 62.33 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4150 35
  • 69 (a)
OneToOne
Species where no ortholog for WDR83OS was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for WDR83OS Gene

ENSEMBL:
Gene Tree for WDR83OS (if available)
TreeFam:
Gene Tree for WDR83OS (if available)

Paralogs for WDR83OS Gene

No data available for Paralogs for WDR83OS Gene

Variants for WDR83OS Gene

Sequence variations from dbSNP and Humsavar for WDR83OS Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000546631 -- 12,669,427(+) TCACG(C/G)CTCTT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000730248 -- 12,672,374(+) GAGGC(C/T)GAGGT intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs1000917887 -- 12,669,249(+) CTCGA(A/G)GGTCA intron-variant, upstream-variant-2KB
rs1002339 -- 12,669,973(-) CACTG(A/G/T)GGAAC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1002678776 -- 12,668,191(+) TAAGC(C/T)TAGGG intron-variant, upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for WDR83OS Gene

Variant ID Type Subtype PubMed ID
dgv138n111 CNV deletion 26073780
nsv1160586 CNV duplication 26073780
nsv953977 CNV deletion 24416366

Variation tolerance for WDR83OS Gene

Residual Variation Intolerance Score: 61.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.02; 0.35% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for WDR83OS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WDR83OS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for WDR83OS Gene

Disorders for WDR83OS Gene

Relevant External Links for WDR83OS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WDR83OS

No disorders were found for WDR83OS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WDR83OS Gene

Publications for WDR83OS Gene

  1. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PMID: 10810093) Lai C.-H. … Lin W.-C. (Genome Res. 2000) 2 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  5. Identification of novel ATP13A2 interactors and their role in I+-synuclein misfolding and toxicity. (PMID: 22645275) Usenovic M. … Krainc D. (Hum. Mol. Genet. 2012) 3 64

Products for WDR83OS Gene

Sources for WDR83OS Gene

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