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Aliases for WDR83OS Gene

Aliases for WDR83OS Gene

  • WD Repeat Domain 83 Opposite Strand 2 3 4 5
  • WDR83 Opposite Strand 3 4
  • C19orf56 3 4
  • Chromosome 19 Open Reading Frame 56 2
  • UPF0139 Membrane Protein C19orf56 3
  • PTD008 3

External Ids for WDR83OS Gene

Previous HGNC Symbols for WDR83OS Gene

  • C19orf56

Previous GeneCards Identifiers for WDR83OS Gene

  • GC19M012779

Summaries for WDR83OS Gene

GeneCards Summary for WDR83OS Gene

WDR83OS (WD Repeat Domain 83 Opposite Strand) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDR83OS Gene

Genomics for WDR83OS Gene

Regulatory Elements for WDR83OS Gene

Enhancers for WDR83OS Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around WDR83OS on UCSC Golden Path with GeneCards custom track

Promoters for WDR83OS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around WDR83OS on UCSC Golden Path with GeneCards custom track

Genomic Location for WDR83OS Gene

Chromosome:
19
Start:
12,668,067 bp from pter
End:
12,671,356 bp from pter
Size:
3,290 bases
Orientation:
Minus strand

Genomic View for WDR83OS Gene

Genes around WDR83OS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WDR83OS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WDR83OS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDR83OS Gene

Proteins for WDR83OS Gene

  • Protein details for WDR83OS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y284-ASTER_HUMAN
    Recommended name:
    Protein Asterix
    Protein Accession:
    Q9Y284
    Secondary Accessions:
    • B2R4T8
    • Q9BVI3

    Protein attributes for WDR83OS Gene

    Size:
    106 amino acids
    Molecular mass:
    12068 Da
    Quaternary structure:
    No Data Available

neXtProt entry for WDR83OS Gene

Proteomics data for WDR83OS Gene at MOPED

Post-translational modifications for WDR83OS Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for WDR83OS Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for WDR83OS Gene

Domains & Families for WDR83OS Gene

Protein Domains for WDR83OS Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for WDR83OS Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y284

UniProtKB/Swiss-Prot:

ASTER_HUMAN :
  • Belongs to the Asterix family.
Family:
  • Belongs to the Asterix family.
genes like me logo Genes that share domains with WDR83OS: view

No data available for Gene Families for WDR83OS Gene

Function for WDR83OS Gene

Phenotypes for WDR83OS Gene

genes like me logo Genes that share phenotypes with WDR83OS: view

Animal Model Products

  • Taconic Biosciences Mouse Models for WDR83OS

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for WDR83OS Gene

Localization for WDR83OS Gene

Subcellular locations from UniProtKB/Swiss-Prot for WDR83OS Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for WDR83OS Gene COMPARTMENTS Subcellular localization image for WDR83OS gene
Compartment Confidence
extracellular 2
cytosol 1
nucleus 1
peroxisome 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for WDR83OS Gene

Pathways & Interactions for WDR83OS Gene

SuperPathways for WDR83OS Gene

No Data Available

Interacting Proteins for WDR83OS Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000468969%0d%0a9606.ENSP00000327214%0d%0a
Selected Interacting proteins: ENSP00000468969 Q9Y284-ASTER_HUMAN for WDR83OS Gene via STRING I2D

Gene Ontology (GO) - Biological Process for WDR83OS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WDR83OS Gene

Drugs & Compounds for WDR83OS Gene

No Compound Related Data Available

Transcripts for WDR83OS Gene

Unigene Clusters for WDR83OS Gene

WD repeat domain 83 opposite strand:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for WDR83OS Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b
SP1:
SP2:

Relevant External Links for WDR83OS Gene

GeneLoc Exon Structure for
WDR83OS
ECgene alternative splicing isoforms for
WDR83OS

Expression for WDR83OS Gene

mRNA expression in normal human tissues for WDR83OS Gene

Protein differential expression in normal tissues from HIPED for WDR83OS Gene

This gene is overexpressed in Breast (56.1) and Pancreas (12.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for WDR83OS Gene



SOURCE GeneReport for Unigene cluster for WDR83OS Gene Hs.108969

genes like me logo Genes that share expression patterns with WDR83OS: view

Protein tissue co-expression partners for WDR83OS Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for WDR83OS Gene

Orthologs for WDR83OS Gene

This gene was present in the common ancestor of animals.

Orthologs for WDR83OS Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia WDR83OS 35
  • 93.71 (n)
  • 99.06 (a)
WDR83OS 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia WDR83OS 35
  • 93.08 (n)
  • 100 (a)
WDR83OS 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia BC056474 35
  • 91.82 (n)
  • 100 (a)
Wdr83os 16
BC056474 36
  • 57 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia WDR83OS 35
  • 100 (n)
  • 100 (a)
WDR83OS 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia WDR83OS 36
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia WDR83OS 36
  • 82 (a)
OneToOne
chicken
(Gallus gallus)
Aves C19ORF56 35
  • 82.84 (n)
  • 89.11 (a)
WDR83OS 36
  • 89 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia WDR83OS 36
  • 82 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia wdr83os 35
  • 76.1 (n)
  • 85.85 (a)
zebrafish
(Danio rerio)
Actinopterygii zgc:73111 35
  • 76.1 (n)
  • 87.74 (a)
WDR83OS 36
  • 88 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007000 35
  • 64.31 (n)
  • 75.76 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG10674 35
  • 66.33 (n)
  • 70.71 (a)
CG10674 36
  • 66 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea K10B2.4 35
  • 62.33 (n)
  • 66 (a)
K10B2.4 36
  • 60 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4150 36
  • 69 (a)
OneToOne
Species with no ortholog for WDR83OS:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for WDR83OS Gene

ENSEMBL:
Gene Tree for WDR83OS (if available)
TreeFam:
Gene Tree for WDR83OS (if available)

Paralogs for WDR83OS Gene

No data available for Paralogs for WDR83OS Gene

Variants for WDR83OS Gene

Sequence variations from dbSNP and Humsavar for WDR83OS Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
VAR_052498 -

Variation tolerance for WDR83OS Gene

Residual Variation Intolerance Score: 61.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.02; 0.35% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for WDR83OS Gene

Disorders for WDR83OS Gene

Relevant External Links for WDR83OS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WDR83OS

No disorders were found for WDR83OS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WDR83OS Gene

Publications for WDR83OS Gene

  1. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PMID: 10810093) Lai C.-H. … Lin W.-C. (Genome Res. 2000) 2 3 4 67
  2. Identification of novel ATP13A2 interactors and their role in I+-synuclein misfolding and toxicity. (PMID: 22645275) Usenovic M. … Krainc D. (Hum. Mol. Genet. 2012) 3
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for WDR83OS Gene

Sources for WDR83OS Gene

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