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Aliases for WDR83OS Gene

Aliases for WDR83OS Gene

  • WD Repeat Domain 83 Opposite Strand 2 3 4
  • WDR83 Opposite Strand 3 4
  • C19orf56 3 4
  • Chromosome 19 Open Reading Frame 56 2
  • UPF0139 Membrane Protein C19orf56 3
  • Protein Asterix 3
  • PTD008 3

External Ids for WDR83OS Gene

Previous Symbols for WDR83OS Gene

  • C19orf56

Summaries for WDR83OS Gene

GeneCards Summary for WDR83OS Gene

WDR83OS (WD Repeat Domain 83 Opposite Strand) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDR83OS Gene

Genomics for WDR83OS Gene

Genomic Location for WDR83OS Gene

Start:
12,668,067 bp from pter
End:
12,671,356 bp from pter
Size:
3,290 bases
Orientation:
Minus strand

Genomic View for WDR83OS Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for WDR83OS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDR83OS Gene

No data available for Regulatory Elements for WDR83OS Gene

Proteins for WDR83OS Gene

  • Protein details for WDR83OS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y284-ASTER_HUMAN
    Recommended name:
    Protein Asterix
    Protein Accession:
    Q9Y284
    Secondary Accessions:
    • B2R4T8
    • Q9BVI3

    Protein attributes for WDR83OS Gene

    Size:
    106 amino acids
    Molecular mass:
    12068 Da
    Quaternary structure:
    No Data Available

neXtProt entry for WDR83OS Gene

Proteomics data for WDR83OS Gene at MOPED

Post-translational modifications for WDR83OS Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for WDR83OS Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for WDR83OS Gene

Domains for WDR83OS Gene

Protein Domains for WDR83OS Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

ASTER_HUMAN
Family:
  • Belongs to the Asterix family.:
    • Q9Y284
genes like me logo Genes that share domains with WDR83OS: view

No data available for Gene Families for WDR83OS Gene

Function for WDR83OS Gene

Phenotypes for WDR83OS Gene

GenomeRNAi human phenotypes for WDR83OS:
genes like me logo Genes that share phenotypes with WDR83OS: view

miRNA for WDR83OS Gene

miRTarBase miRNAs that target WDR83OS

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for WDR83OS Gene

Localization for WDR83OS Gene

Subcellular locations from UniProtKB/Swiss-Prot for WDR83OS Gene

Membrane; Multi-pass membrane protein.

Gene Ontology (GO) - Cellular Components for WDR83OS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with WDR83OS: view

Pathways for WDR83OS Gene

SuperPathways for WDR83OS Gene

No Data Available

Interacting Proteins for WDR83OS Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000468969%0d%0a9606.ENSP00000327214%0d%0a
Selected Interacting proteins: ENSP00000468969 Q9Y284-ASTER_HUMAN for WDR83OS Gene via STRING I2D

Gene Ontology (GO) - Biological Process for WDR83OS Gene

None

No data available for Pathways by source for WDR83OS Gene

Transcripts for WDR83OS Gene

mRNA/cDNA for WDR83OS Gene

Unigene Clusters for WDR83OS Gene

WD repeat domain 83 opposite strand:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for WDR83OS Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b
SP1:
SP2:

Relevant External Links for WDR83OS Gene

GeneLoc Exon Structure for
WDR83OS
ECgene alternative splicing isoforms for
WDR83OS

Expression for WDR83OS Gene

mRNA expression in normal human tissues for WDR83OS Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for WDR83OS Gene

SOURCE GeneReport for Unigene cluster for WDR83OS Gene Hs.108969

genes like me logo Genes that share expressions with WDR83OS: view

Orthologs for WDR83OS Gene

This gene was present in the common ancestor of animals.

Orthologs for WDR83OS Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia WDR83OS 36
  • 100 (n)
  • 100 (a)
WDR83OS 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia WDR83OS 36
  • 93.71 (n)
  • 99.06 (a)
WDR83OS 37
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia WDR83OS 36
  • 93.08 (n)
  • 100 (a)
WDR83OS 37
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia BC056474 36
  • 91.82 (n)
  • 100 (a)
BC056474 16
BC056474 37
  • 57 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia WDR83OS 37
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia WDR83OS 37
  • 82 (a)
OneToOne
chicken
(Gallus gallus)
Aves C19ORF56 36
  • 82.84 (n)
  • 89.11 (a)
WDR83OS 37
  • 89 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia WDR83OS 37
  • 82 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia wdr83os 36
  • 76.1 (n)
  • 85.85 (a)
zebrafish
(Danio rerio)
Actinopterygii WDR83OS 37
  • 88 (a)
OneToOne
zgc:73111 36
  • 76.1 (n)
  • 87.74 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007000 36
  • 64.31 (n)
  • 75.76 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG10674 36
  • 66.33 (n)
  • 70.71 (a)
CG10674 37
  • 66 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea K10B2.4 36
  • 62.33 (n)
  • 66 (a)
K10B2.4 37
  • 60 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4150 37
  • 69 (a)
OneToOne
Species with no ortholog for WDR83OS:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for WDR83OS Gene

ENSEMBL:
Gene Tree for WDR83OS (if available)
TreeFam:
Gene Tree for WDR83OS (if available)

Paralogs for WDR83OS Gene

No data available for Paralogs for WDR83OS Gene

Variants for WDR83OS Gene

Sequence variations from dbSNP and Humsavar for WDR83OS Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
VAR_052498 -

Relevant External Links for WDR83OS Gene

HapMap Linkage Disequilibrium report
WDR83OS

No data available for Structural Variations from Database of Genomic Variants (DGV) for WDR83OS Gene

Disorders for WDR83OS Gene

No disorders were found for WDR83OS Gene.

No data available for UniProtKB/Swiss-Prot for WDR83OS Gene

Publications for WDR83OS Gene

  1. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PMID: 10810093) Lai C.-H. … Lin W.-C. (Genome Res. 2000) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  5. Identification of novel ATP13A2 interactors and their role in I+-synuclein misfolding and toxicity. (PMID: 22645275) Usenovic M. … Krainc D. (Hum. Mol. Genet. 2012) 3

Products for WDR83OS Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate WDR83OS
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for WDR83OS
    • Block miRNA regulation of WDR83OS using miScript Target Protectors
    • antibodies-online peptides for WDR83OS
    • antibodies-online antibodies for WDR83OS
    • antibodies-online kits for WDR83OS

    Sources for WDR83OS Gene

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