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Aliases for WDR83 Gene

Aliases for WDR83 Gene

  • WD Repeat Domain 83 2 3
  • MAPK Organizer 1 2 3 4
  • Mitogen-Activated Protein Kinase Organizer 1 3 4
  • MORG1 3 4
  • WD Repeat Domain-Containing Protein 83 3

External Ids for WDR83 Gene

Previous GeneCards Identifiers for WDR83 Gene

  • GC19P012777
  • GC19P012350

Summaries for WDR83 Gene

Entrez Gene Summary for WDR83 Gene

  • This gene encodes a member of the WD-40 protein family. The protein is proposed to function as a molecular scaffold for various multimeric protein complexes. The protein associates with several components of the extracellular signal-regulated kinase (ERK) pathway, and promotes ERK activity in response to serum or other signals. The protein also interacts with egl nine homolog 3 (EGLN3, also known as PHD3) and regulates expression of hypoxia-inducible factor 1, and has been purified as part of the spliceosome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2009]

GeneCards Summary for WDR83 Gene

WDR83 (WD Repeat Domain 83) is a Protein Coding gene. Diseases associated with WDR83 include hypoxia. An important paralog of this gene is ATG16L1.

UniProtKB/Swiss-Prot for WDR83 Gene

  • Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. At low concentrations it enhances ERK activation, whereas high concentrations lead to the inhibition of ERK activation. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha via its interaction with EGLN3/PHD3. May promote degradation of HIF1A. May act by recruiting signaling complexes to a specific upstream activator (By similarity). May also be involved in pre-mRNA splicing.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDR83 Gene

Genomics for WDR83 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for WDR83 Gene

Start:
12,666,800 bp from pter
End:
12,675,832 bp from pter
Size:
9,033 bases
Orientation:
Plus strand

Genomic View for WDR83 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for WDR83 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDR83 Gene

No data available for Regulatory Elements for WDR83 Gene

Proteins for WDR83 Gene

  • Protein details for WDR83 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BRX9-WDR83_HUMAN
    Recommended name:
    WD repeat domain-containing protein 83
    Protein Accession:
    Q9BRX9
    Secondary Accessions:
    • B2RAF1
    • Q53FT6

    Protein attributes for WDR83 Gene

    Size:
    315 amino acids
    Molecular mass:
    34343 Da
    Quaternary structure:
    • Interacts with EGLN3/PHD3. Interacts with ERK signaling proteins MAP2K1/MEK1, MAP2K2/MEK2, LAMTOR3, ARAF/Raf-1, MAPK1/ERK2 and MAPK3/ERK1 (By similarity). Identified in the spliceosome C complex.

neXtProt entry for WDR83 Gene

Proteomics data for WDR83 Gene at MOPED

Post-translational modifications for WDR83 Gene

  • Ubiquitination at Lys19, Lys47, and Lys50
  • Modification sites at PhosphoSitePlus

Other Protein References for WDR83 Gene

No data available for DME Specific Peptides for WDR83 Gene

Domains for WDR83 Gene

Gene Families for WDR83 Gene

HGNC:
  • WDR :WD repeat domain containing

Suggested Antigen Peptide Sequences for WDR83 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BRX9

UniProtKB/Swiss-Prot:

WDR83_HUMAN :
  • Q9BRX9
Family:
  • Belongs to the WD repeat MORG1 family.
Similarity:
  • Contains 7 WD repeats.
genes like me logo Genes that share domains with WDR83: view

Function for WDR83 Gene

Molecular function for WDR83 Gene

UniProtKB/Swiss-Prot Function: Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. At low concentrations it enhances ERK activation, whereas high concentrations lead to the inhibition of ERK activation. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha via its interaction with EGLN3/PHD3. May promote degradation of HIF1A. May act by recruiting signaling complexes to a specific upstream activator (By similarity). May also be involved in pre-mRNA splicing.

Gene Ontology (GO) - Molecular Function for WDR83 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 22365833
GO:0016301 kinase activity --
genes like me logo Genes that share ontologies with WDR83: view
genes like me logo Genes that share phenotypes with WDR83: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for WDR83

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for WDR83 Gene

Localization for WDR83 Gene

Subcellular locations from UniProtKB/Swiss-Prot for WDR83 Gene

Cytoplasm. Nucleus. Note=Predominantly cytoplasmic. Partially nuclear. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for WDR83 Gene COMPARTMENTS Subcellular localization image for WDR83 gene
Compartment Confidence
nucleus 5
cytoskeleton 2
cytosol 1
extracellular 1

Gene Ontology (GO) - Cellular Components for WDR83 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005681 spliceosomal complex IDA 11991638
GO:0005737 cytoplasm IEA --
GO:0071013 catalytic step 2 spliceosome IDA 11991638
genes like me logo Genes that share ontologies with WDR83: view

Pathways for WDR83 Gene

SuperPathways for WDR83 Gene

No Data Available

Gene Ontology (GO) - Biological Process for WDR83 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000375 RNA splicing, via transesterification reactions IDA 11991638
GO:0000398 mRNA splicing, via spliceosome IDA 11991638
GO:0016310 phosphorylation --
genes like me logo Genes that share ontologies with WDR83: view

No data available for Pathways by source for WDR83 Gene

Transcripts for WDR83 Gene

Unigene Clusters for WDR83 Gene

WD repeat domain 83:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for WDR83

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for WDR83 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8
SP1:
SP2: - -

Relevant External Links for WDR83 Gene

GeneLoc Exon Structure for
WDR83
ECgene alternative splicing isoforms for
WDR83

Expression for WDR83 Gene

mRNA expression in normal human tissues for WDR83 Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for WDR83 Gene

SOURCE GeneReport for Unigene cluster for WDR83 Gene Hs.657204

genes like me logo Genes that share expressions with WDR83: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for WDR83 Gene

Orthologs for WDR83 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for WDR83 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia WDR83 35
  • 99.58 (n)
  • 99.68 (a)
WDR83 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MORG1 36
  • 95 (a)
OneToOne
WDR83 35
  • 90.58 (n)
  • 95.24 (a)
dog
(Canis familiaris)
Mammalia WDR83 35
  • 89.95 (n)
  • 96.51 (a)
WDR83 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Wdr83 35
  • 88.04 (n)
  • 93.97 (a)
Wdr83 16
Wdr83 36
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia WDR83 36
  • 81 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia WDR83 36
  • 80 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Wdr83 35
  • 87.2 (n)
  • 93.02 (a)
lizard
(Anolis carolinensis)
Reptilia WDR83 36
  • 80 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.2857 35
wdr83 35
  • 72.4 (n)
  • 75.8 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.1078 35
zebrafish
(Danio rerio)
Actinopterygii wdr83 35
  • 69.44 (n)
  • 73.72 (a)
wdr83 36
  • 73 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008129 35
  • 57.51 (n)
  • 48.68 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG4935 35
  • 52.63 (n)
  • 48.42 (a)
CG4935 36
  • 45 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F33G12.2 35
  • 49.49 (n)
  • 48.46 (a)
F33G12.2 36
  • 47 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G64730 35
  • 52.03 (n)
  • 51.01 (a)
rice
(Oryza sativa)
Liliopsida Os02g0543400 35
  • 56.05 (n)
  • 49.66 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.8158 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 51 (a)
OneToOne
Species with no ortholog for WDR83:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for WDR83 Gene

ENSEMBL:
Gene Tree for WDR83 (if available)
TreeFam:
Gene Tree for WDR83 (if available)

Paralogs for WDR83 Gene

genes like me logo Genes that share paralogs with WDR83: view

Variants for WDR83 Gene

Sequence variations from dbSNP and Humsavar for WDR83 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs10406655 -- 12,672,004(+) aaaat(A/G)tattt intron-variant
rs10414810 -- 12,673,360(+) GCCCC(A/G)TCTCA intron-variant
rs10426586 -- 12,675,090(+) gcctg(G/T)cgaca intron-variant
rs10426587 -- 12,675,092(+) ctggc(A/G)acaga intron-variant
rs12609451 -- 12,674,069(+) GTGTA(G/T)CCTGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for WDR83 Gene

Variant ID Type Subtype PubMed ID
dgv3733n71 CNV Loss 21882294

Relevant External Links for WDR83 Gene

HapMap Linkage Disequilibrium report
WDR83

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for WDR83 Gene

Disorders for WDR83 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for WDR83 Gene including...

Search for WDR83 Gene in MalaCards »
genes like me logo Genes that share disorders with WDR83: view

No data available for UniProtKB/Swiss-Prot for WDR83 Gene

Publications for WDR83 Gene

  1. Modular construction of a signaling scaffold: MORG1 interacts with components of the ERK cascade and links ERK signaling to specific agonists. (PMID: 15118098) Vomastek T. … Weber M.J. (Proc. Natl. Acad. Sci. U.S.A. 2004) 2 3 23
  2. Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. (PMID: 11991638) Jurica M.S. … Moore M.J. (RNA 2002) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. The novel WD-repeat protein Morg1 acts as a molecular scaffold for hypoxia-inducible factor prolyl hydroxylase 3 (PHD3). (PMID: 16407229) Hopfer U. … Wolf G. (J. Biol. Chem. 2006) 2 3
  5. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang A.G. … Kim N.S. (Biochem. Biophys. Res. Commun. 2006) 3

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