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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

WDR52 Gene

protein-coding GIFtS: 37
GCID: GC03M113005

WD repeat domain 52

Search for WDR52
in

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
WD Repeat Domain 52¹ ²
FLJ11142¹
WD Repeat-Containing Protein 52²

External Ids:	HGNC: 25631¹	Entrez Gene: 55779²	Ensembl: ENSG00000206530⁷	UniProtKB: Q96MT7³

Export aliases for WDR52 gene to outside databases

Previous GC identifers: GC03M114493 GC03M114564 GC03M110380

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000003.11 NC_018914.1 NT_005612.16

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the WDR52 gene promoter:
Egr-3 HOXA9 HOXA9B NCX/Ncx Nkx2-5 Ik-2 Sox9 Meis-1a Ik-1 Meis-1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: WDR52 promoter sequence

Search SABiosciences Chromatin IP Primers for WDR52

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat WDR52

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q13.2 Ensembl cytogenetic band: 3q13.2 HGNC cytogenetic band: 3q13.2

WDR52 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
WDR52 gene location

GeneLoc information about chromosome 3 GeneLoc Exon Structure

GeneLoc location for GC03M113005: view genomic region (about GC identifiers)

Start:	113,005,777 bp from pter	End:	113,160,457 bp from pter
Size:	154,681 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: WDR52_HUMAN, Q96MT7 (See protein sequence)

Recommended Name: WD repeat-containing protein 52

Size: 982 amino acids; 111729 Da

Alternative splicing: 2 isoforms: Q96MT7-1 Q96MT7-2 (Contains a phosphoserine at position 1083)

Explore the universe of human proteins at neXtProt for WDR52: NX_Q96MT7

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q96MT7

WDR52 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (2 alternative transcripts):

NP_001157968.1 NP_060808.2

ENSEMBL proteins:

ENSP00000418257 ENSP00000417371 ENSP00000418795 ENSP00000419269 ENSP00000419844

ENSP00000295868 ENSP00000418743 ENSP00000420375 ENSP00000419671 ENSP00000377428

ENSP00000311497

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

WDR52 for domains About GeneDecksing

4 InterPro domains/families:

IPR019775 WD40_repeat_CS

IPR001680 WD40_repeat

IPR017986 WD40_repeat_dom

IPR015943 WD40/YVTN_repeat-like_dom

Graphical View of Domain Structure for InterPro Entry Q96MT7

ProtoNet protein and cluster: Q96MT7

UniProtKB/Swiss-Prot: WDR52_HUMAN, Q96MT7

Similarity: Contains 9 WD repeats

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for WDR52

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

REFSEQ mRNAs for WDR52 gene (2 alternative transcripts):

NM_001164496.1 NM_018338.3

Unigene Cluster for WDR52:

WD repeat domain 52

Hs.584936 [show with all ESTs]

Unigene Representative Sequence: NM_001164496

15 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000489244 ENST00000465636 ENST00000461734 ENST00000484923 ENST00000465510

ENST00000490481 ENST00000488854 ENST00000295868(uc003eae.2) ENST00000475568

ENST00000465186 ENST00000489938 ENST00000479422 ENST00000473143 ENST00000393845(uc010hqj.2 uc010hqk.2 uc003ead.2)

ENST00000308346

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Additional cDNA sequence:

AK002004.1 AK056472.1 AK094398.1 AL133606.1 BC016799.1 BC101582.1 BC113553.1 CR936646.1

15 DOTS entries:

DT.432861 DT.100747957 DT.95356243 DT.95071164 DT.95261663 DT.97815814 DT.100027217 DT.100747960

DT.120854359 DT.120854374 DT.120854411 DT.40290979 DT.95241232 DT.95188668 DT.95356242

24/68 AceView cDNA sequences (see all 68):

CD721760 BM719941 BM978031 AI559117 AI282071 AI857354 NM_018338 AK124247

CA438384 BU167884 AK056472 AI559580 AW880525 BF739829 AU137471 AL133606

BQ720794 BV205686 BM676796 AK002004 BG958146 BG413531 BU570494 AI359518

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

WDR52 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

About this image

WDR52 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

3 LifeMap In Vivo Development Anatomical Compartments/Cells

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Neural Tube

Diencephalic Floor Plate

Neural Tube

Mesencephalic Floor Plate

Neural Tube

Metencephalon

Neural Tube

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

Posterior foregut-like cells (A scalable, suspensi...)

See WDR52 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for WDR52

SOURCE GeneReport for Unigene cluster: Hs.584936

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for WDR52 gene from 5/19 species (see all 19) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Wdr52^{1 , 5}	WD repeat domain 52^{1, 5}	79.01(n)¹ 76.81(a)¹		16 (28.72 cM)⁵ 212517¹ NM_001033247.1¹ NP_001028419.1¹ 44394796⁵
chicken (Gallus gallus)	Aves	WDR52¹	WD repeat domain 52	62.91(n) 54.7(a)		418359 XM_416579.3 XP_416579.3
lizard (Anolis carolinensis)	Reptilia	-- --	--	61(a) 57(a)	many → 1 many → 1	3(176186135-176196848) 3(176224010-176270420)
zebrafish (Danio rerio)	Actinopterygii	CABZ01101983.1⁶	--	33(a)	1 ↔ 1	19(50245572-50250398)
fruit fly (Drosophila melanogaster)	Insecta	CG34124¹	CG34124	43.31(n) 29.86(a)		4379887 NM_001042868.1 NP_001036333.1

ENSEMBL Gene Tree for WDR52 (if available)
TreeFam Gene Tree for WDR52 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 3 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs146459508^1,2	C,	--	113005741(+)	`TATTG-/TTTTTT`	2	--	ut3¹ int¹		0	--	--	--	--
rs76380714^1,2		--	113005753(+)	`TTTTTA/TAAAAA`	2	--	ut3¹ int¹		0	--	--	--	--
rs5022662^1,2	C,F,	--	113005754(+)	`TTTTTT/AAAAAA`	2	--	ut3¹ int¹		3		NA WA	6
rs5851892^1,2	C	--	113005754(+)	`TTTTT-/AAAAAA`	2	--	ut3¹ int¹		0	--	--	--	--
rs115046855^1,2	F,	--	113005813(+)	`ATAGCC/TATATT`	2	--	ut3¹		1		WA	118
rs2399476^1,2	C,F,O,A,	--	113005952(-)	`CTGTGC/TGGTGC`	2	--	ut3¹		7		NA CSA WA EA	499
rs73235156^1,2	C,	--	113005964(+)	`CTGGCA/GCGGGA`	2	--	ut3¹		0	--	--	--	--
rs111251800^1,2	C,	--	113006054(+)	`CCAGGC/G/TACATG`	4	--	ut3¹		1		CSA	1
rs143653499^1,2		--	113006096(+)	`GCACGA/GTATCA`	2	--	ut3¹		0	--	--	--	--
rs9826018^1,2	C,F,A,	--	113006135(+)	`GGATCC/TGGTGC`	2	--	ut3¹		1		WA	118

HapMap Linkage Disequilibrium report for WDR52 (113005777 - 113160457 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for WDR52
1 Indel: 12321

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for WDR52 gene integrated from 9 sources:
(articles sorted by number of sources associating them with WDR52)

Utopia: connect your pdf to the dynamic
world of online information

Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)^{1, 3} Strausberg R.L....Marra M.A. (2002)
Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)² Mayya V.... Han D.K. (2009)
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)¹ Kimura K.... Sugano S. (2006)
The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997)² Muzny D.M....Gibbs R.A. (2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)² Gerhard D.S....Malek J. (2004)
Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)¹ Bonaldo M.F.... Soares M.B. (1996)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 55779	HGNC: 25631	AceView: FLJ11142	Ensembl:ENSG00000206530	euGenes: HUgn55779
ECgene: WDR52	H-InvDB: WDR52

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for WDR52	Pharmacogenomics, SNPs, Pathways

Intellectual Property for WDR52 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for WDR52 gene:
Search GeneIP for patents involving WDR52

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section


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GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
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The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

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Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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WDR52 Gene

WD repeat domain 52

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WDR52 Gene

WD repeat domain 52

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