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Aliases for WDR47 Gene

Aliases for WDR47 Gene

  • WD Repeat Domain 47 2 3
  • Nemitin 3 4 6
  • Neuronal Enriched MAP-Interacting Protein 3 4
  • KIAA0893 4 6
  • Neuronal Enriched MAP Interacting Protein 3
  • WD Repeat-Containing Protein 47 3

External Ids for WDR47 Gene

Previous GeneCards Identifiers for WDR47 Gene

  • GC01M109225
  • GC01M109314
  • GC01M109512
  • GC01M107405

Summaries for WDR47 Gene

GeneCards Summary for WDR47 Gene

WDR47 (WD Repeat Domain 47) is a Protein Coding gene. An important paralog of this gene is GNB4.

Gene Wiki entry for WDR47 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDR47 Gene

Genomics for WDR47 Gene

Regulatory Elements for WDR47 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for WDR47 Gene

108,970,213 bp from pter
109,042,228 bp from pter
72,016 bases
Minus strand

Genomic View for WDR47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for WDR47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDR47 Gene

Proteins for WDR47 Gene

  • Protein details for WDR47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    WD repeat-containing protein 47
    Protein Accession:
    Secondary Accessions:
    • A8MX09
    • Q5TYV7
    • Q5TYV8
    • Q5TYV9
    • Q8IXT7
    • Q8IYU9

    Protein attributes for WDR47 Gene

    919 amino acids
    Molecular mass:
    101949 Da
    Quaternary structure:
    • Interacts with MAP1S (via WD repeats).
    • Sequence=AK225781; Type=Frameshift; Positions=416; Evidence={ECO:0000305}; Sequence=BAA74916.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for WDR47 Gene


neXtProt entry for WDR47 Gene

Proteomics data for WDR47 Gene at MOPED

Post-translational modifications for WDR47 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for WDR47 Gene

Domains for WDR47 Gene

Gene Families for WDR47 Gene

  • WDR :WD repeat domain containing

Suggested Antigen Peptide Sequences for WDR47 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • O94967
  • Contains 1 CTLH domain.
  • Contains 1 LisH domain.
  • Contains 7 WD repeats.
genes like me logo Genes that share domains with WDR47: view

Function for WDR47 Gene

Gene Ontology (GO) - Molecular Function for WDR47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with WDR47: view

Phenotypes for WDR47 Gene

genes like me logo Genes that share phenotypes with WDR47: view

Animal Model Products

miRNA for WDR47 Gene

miRTarBase miRNAs that target WDR47

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for WDR47

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for WDR47 Gene

Localization for WDR47 Gene

Subcellular locations from UniProtKB/Swiss-Prot for WDR47 Gene

Cytoplasm, cytoskeleton. Note=Localization along microtubules is mediated by MAP1S. {ECO:0000250}.

Subcellular locations from

Jensen Localization Image for WDR47 Gene COMPARTMENTS Subcellular localization image for WDR47 gene
Compartment Confidence
cytoskeleton 3
cytosol 3
nucleus 2
plasma membrane 1

Gene Ontology (GO) - Cellular Components for WDR47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005874 microtubule IEA --
genes like me logo Genes that share ontologies with WDR47: view

Pathways for WDR47 Gene

SuperPathways for WDR47 Gene

No Data Available

Interacting Proteins for WDR47 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
Selected Interacting proteins: O94967-WDR47_HUMAN ENSP00000383599 for WDR47 Gene via MINT STRING UniProtKB I2D

Gene Ontology (GO) - Biological Process for WDR47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007275 multicellular organismal development IEA --
genes like me logo Genes that share ontologies with WDR47: view

No data available for Pathways by source for WDR47 Gene

Transcripts for WDR47 Gene

Unigene Clusters for WDR47 Gene

WD repeat domain 47:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for WDR47

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for WDR47 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15 ^ 16
SP3: -

Relevant External Links for WDR47 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for WDR47 Gene

mRNA expression in normal human tissues for WDR47 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for WDR47 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (4.2).

Protein differential expression in normal tissues for WDR47 Gene

This gene is overexpressed in Fetal Brain (30.0), Frontal cortex (20.2), and Brain (9.8).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for WDR47 Gene

SOURCE GeneReport for Unigene cluster for WDR47 Gene Hs.570055

genes like me logo Genes that share expressions with WDR47: view

Expression partners for WDR47 Gene

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for WDR47 Gene

Orthologs for WDR47 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for WDR47 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia WDR47 35
  • 94.2 (n)
  • 97.17 (a)
WDR47 36
  • 96 (a)
(Canis familiaris)
Mammalia WDR47 35
  • 94.35 (n)
  • 97.17 (a)
WDR47 36
  • 96 (a)
(Mus musculus)
Mammalia Wdr47 35
  • 90.22 (n)
  • 95.54 (a)
Wdr47 16
Wdr47 36
  • 96 (a)
(Pan troglodytes)
Mammalia WDR47 35
  • 99.82 (n)
  • 99.89 (a)
WDR47 36
  • 100 (a)
(Rattus norvegicus)
Mammalia Wdr47 35
  • 89.24 (n)
  • 95.54 (a)
(Monodelphis domestica)
Mammalia WDR47 36
  • 57 (a)
(Ornithorhynchus anatinus)
Mammalia WDR47 36
  • 74 (a)
(Gallus gallus)
Aves WDR47 35
  • 81.77 (n)
  • 91.27 (a)
WDR47 36
  • 91 (a)
(Anolis carolinensis)
Reptilia WDR47 36
  • 90 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia wdr47 35
  • 71.93 (n)
  • 82.13 (a)
(Danio rerio)
Actinopterygii wdr47a 35
  • 68.61 (n)
  • 79.53 (a)
wdr47a 36
  • 78 (a)
wdr47b 36
  • 71 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.14134 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006113 35
  • 55.08 (n)
  • 59.45 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG2812 35
  • 54.05 (n)
  • 53.23 (a)
CG2812 36
  • 51 (a)
(Caenorhabditis elegans)
Secernentea nmtn-1 35
  • 52.24 (n)
  • 45.61 (a)
nmtn-1 36
  • 36 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes STE4 36
  • 20 (a)
Species with no ortholog for WDR47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for WDR47 Gene

Gene Tree for WDR47 (if available)
Gene Tree for WDR47 (if available)

Paralogs for WDR47 Gene

Paralogs for WDR47 Gene

genes like me logo Genes that share paralogs with WDR47: view

Variants for WDR47 Gene

Sequence variations from dbSNP and Humsavar for WDR47 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs170896 -- 109,042,258(+) gggcg(G/T)ggagg upstream-variant-2KB
rs184605 -- 109,012,603(+) GGAAT(A/G)CCTAA intron-variant
rs184606 -- 109,002,424(-) TATAT(A/G)TTTTT intron-variant
rs189241 -- 109,012,309(-) GCCAC(C/T)GTGCT intron-variant
rs337294 -- 109,012,650(+) ATGGA(A/C)GCTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for WDR47 Gene

Variant ID Type Subtype PubMed ID
nsv831026 CNV Loss 17160897
nsv437236 CNV Loss 16327808
esv32817 CNV Loss 17666407
esv2676133 CNV Deletion 23128226
nsv823954 CNV Loss 20364138
dgv64n67 CNV Loss 20364138
nsv823987 CNV Loss 20364138
esv2798 CNV Deletion 18987735
dgv60e199 CNV Deletion 23128226
esv27754 CNV Loss 19812545
esv2658750 CNV Deletion 23128226

Relevant External Links for WDR47 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for WDR47 Gene

Disorders for WDR47 Gene

No disorders were found for WDR47 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for WDR47 Gene

Publications for WDR47 Gene

  1. Prediction of the coding sequences of unidentified human genes. XII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10048485) Nagase T. … Ohara O. (DNA Res. 1998) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3
  4. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for WDR47 Gene

Sources for WDR47 Gene

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