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Aliases for WDR45B Gene

Aliases for WDR45B Gene

  • WD Repeat Domain 45B 2 3 5
  • WD Repeat-Containing Protein 45-Like 3 4
  • WD Repeat-Containing Protein 45B 3 4
  • WIPI49-Like Protein 3 4
  • WDR45-Like Protein 3 4
  • WDR45L 3 4
  • WIPI-3 3 4
  • WIPI3 3 4
  • WD Repeat Domain Phosphoinositide-Interacting Protein 3 3
  • WD Repeat Protein 45-Like 3
  • WDR45-Like 2
  • WIPI3 Long 3

External Ids for WDR45B Gene

Previous HGNC Symbols for WDR45B Gene

  • WDR45L

Previous GeneCards Identifiers for WDR45B Gene

  • GC17M080574

Summaries for WDR45B Gene

Entrez Gene Summary for WDR45B Gene

  • This gene encodes a member of the WIPI or SVP1 family of WD40 repeat-containing proteins. The protein contains seven WD40 repeats that are thought to fold into a beta-propeller structure that mediates protein-protein interactions, and a conserved motif for interaction with phospholipids. The human genome contains several pseudogenes of this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for WDR45B Gene

WDR45B (WD Repeat Domain 45B) is a Protein Coding gene. Diseases associated with WDR45B include Spastic Cerebral Palsy. Among its related pathways are Cellular Senescence (REACTOME) and Autophagy Pathway. GO annotations related to this gene include phosphatidylinositol-3-phosphate binding and phosphatidylinositol-3,5-bisphosphate binding. An important paralog of this gene is WDR45.

Gene Wiki entry for WDR45B Gene

Additional gene information for WDR45B Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDR45B Gene

Genomics for WDR45B Gene

Regulatory Elements for WDR45B Gene

Enhancers for WDR45B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H082671 1.1 ENCODE dbSUPER 45.6 -22.6 -22607 0 ARNT ZNF473 ZNF493 ZSCAN4 NFRKB ZNF195 YBX1 PLRG1 ZNF207 KLF7 TBCD WDR45B OGFOD3 GPS1 HEXDC ENSG00000260563 ENSG00000263321 ENSG00000262652 ARL2BPP9 NARF-IT1
GH17H082281 1.8 FANTOM5 Ensembl ENCODE dbSUPER 23.8 +365.8 365766 2 HDGF ARNT ZNF493 YBX1 GLI4 ZNF48 ZBTB7B GLIS2 ELK1 ZNF207 TBCD FAAP100 OGFOD3 ENSG00000260563 ENSG00000262877 NARF-IT1 ENSG00000262652 ENSG00000265678 ARL2BPP9 GPS1
GH17H082492 2.1 FANTOM5 Ensembl ENCODE dbSUPER 19.4 +153.1 153061 6 ZFP64 FEZF1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC ZFP41 MEF2D TBCD HGS NARF ALYREF ENSG00000260563 GPS1 ARL2BPP9 FOXK2 NARF-IT1 ENSG00000262652
GH17H082590 1.4 FANTOM5 ENCODE dbSUPER 23.5 +56.1 56082 3 PKNOX1 ARNT KLF17 SIN3A BRCA1 ZBTB7B ZNF121 ZNF366 ZNF143 ZNF207 WDR45B LOC105371942 HGS ALYREF CCDC137 LOC101929552 FN3K RAB40B ENSG00000261845
GH17H082095 2.1 FANTOM5 Ensembl ENCODE dbSUPER 14.1 +546.7 546744 13 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC SSRP1 ZNF585B CCDC57 CEP131 LOC105371942 TBCD ALYREF HGS WDR45B NPLOC4 ARL16 DCXR
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WDR45B on UCSC Golden Path with GeneCards custom track

Promoters for WDR45B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000099656 453 2201 PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF766 ZNF143 ZNF207

Genomic Location for WDR45B Gene

Chromosome:
17
Start:
82,614,562 bp from pter
End:
82,648,553 bp from pter
Size:
33,992 bases
Orientation:
Minus strand

Genomic View for WDR45B Gene

Genes around WDR45B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WDR45B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WDR45B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDR45B Gene

Proteins for WDR45B Gene

  • Protein details for WDR45B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5MNZ6-WIPI3_HUMAN
    Recommended name:
    WD repeat domain phosphoinositide-interacting protein 3
    Protein Accession:
    Q5MNZ6
    Secondary Accessions:
    • O95328
    • Q2MCP6
    • Q6IBN2

    Protein attributes for WDR45B Gene

    Size:
    344 amino acids
    Molecular mass:
    38122 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAC72952.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for WDR45B Gene

Post-translational modifications for WDR45B Gene

  • Ubiquitination at posLast=278278
  • Modification sites at PhosphoSitePlus

Other Protein References for WDR45B Gene

No data available for DME Specific Peptides for WDR45B Gene

Domains & Families for WDR45B Gene

Gene Families for WDR45B Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for WDR45B Gene

Suggested Antigen Peptide Sequences for WDR45B Gene

Graphical View of Domain Structure for InterPro Entry

Q5MNZ6

UniProtKB/Swiss-Prot:

WIPI3_HUMAN :
  • Belongs to the WD repeat SVP1 family.
Family:
  • Belongs to the WD repeat SVP1 family.
genes like me logo Genes that share domains with WDR45B: view

Function for WDR45B Gene

Phenotypes From GWAS Catalog for WDR45B Gene

Gene Ontology (GO) - Molecular Function for WDR45B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032266 phosphatidylinositol-3-phosphate binding IBA --
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding IBA --
genes like me logo Genes that share ontologies with WDR45B: view
genes like me logo Genes that share phenotypes with WDR45B: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for WDR45B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for WDR45B Gene

Localization for WDR45B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for WDR45B gene
Compartment Confidence
cytosol 5
plasma membrane 2
golgi apparatus 2
nucleus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Golgi apparatus (2)
  • Nucleus (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for WDR45B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol IBA --
GO:0019898 extrinsic component of membrane IBA --
GO:0034045 pre-autophagosomal structure membrane IBA --
genes like me logo Genes that share ontologies with WDR45B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for WDR45B Gene

Pathways & Interactions for WDR45B Gene

genes like me logo Genes that share pathways with WDR45B: view

Pathways by source for WDR45B Gene

2 Reactome pathways for WDR45B Gene

Gene Ontology (GO) - Biological Process for WDR45B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000422 mitophagy IBA --
GO:0006497 protein lipidation IBA --
GO:0006914 autophagy IEA --
GO:0034497 protein localization to pre-autophagosomal structure IBA --
GO:0044804 nucleophagy IBA --
genes like me logo Genes that share ontologies with WDR45B: view

No data available for SIGNOR curated interactions for WDR45B Gene

Drugs & Compounds for WDR45B Gene

No Compound Related Data Available

Transcripts for WDR45B Gene

Unigene Clusters for WDR45B Gene

WD repeat domain 45B:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for WDR45B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for WDR45B Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b · 11c ^ 12a · 12b · 12c ^ 13 ^ 14 ^ 15
SP1: - - - -
SP2: - - - - -
SP3: - - -
SP4: - - -
SP5:
SP6: - -
SP7: - - - - -
SP8:

Relevant External Links for WDR45B Gene

GeneLoc Exon Structure for
WDR45B
ECgene alternative splicing isoforms for
WDR45B

Expression for WDR45B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WDR45B Gene

Protein differential expression in normal tissues from HIPED for WDR45B Gene

This gene is overexpressed in Breast (39.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for WDR45B Gene



Protein tissue co-expression partners for WDR45B Gene

NURSA nuclear receptor signaling pathways regulating expression of WDR45B Gene:

WDR45B

SOURCE GeneReport for Unigene cluster for WDR45B Gene:

Hs.132161

mRNA Expression by UniProt/SwissProt for WDR45B Gene:

Q5MNZ6-WIPI3_HUMAN
Tissue specificity: Ubiquitously expressed. Highly expressed in heart, skeletal muscle and pancreas. Up-regulated in a variety of tumor tissues including ovarian and uterine cancers.
genes like me logo Genes that share expression patterns with WDR45B: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WDR45B Gene

Orthologs for WDR45B Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for WDR45B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia WDR45L 33 34
  • 99.61 (n)
oppossum
(Monodelphis domestica)
Mammalia WDR45B 34
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia WDR45L 33 34
  • 92.15 (n)
dog
(Canis familiaris)
Mammalia WDR45B 33 34
  • 91.72 (n)
mouse
(Mus musculus)
Mammalia Wdr45b 33 16 34
  • 90.99 (n)
rat
(Rattus norvegicus)
Mammalia Wdr45b 33
  • 90.21 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia WDR45B 34
  • 88 (a)
OneToOne
chicken
(Gallus gallus)
Aves WDR45B 34
  • 97 (a)
OneToOne
WDR45L 33
  • 87.5 (n)
lizard
(Anolis carolinensis)
Reptilia WDR45B 34
  • 96 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia wdr45b 33
  • 82.27 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.5528 33
zebrafish
(Danio rerio)
Actinopterygii wdr45l 33 34
  • 80.23 (n)
zgc56002 33
fruit fly
(Drosophila melanogaster)
Insecta CG11975 33 34
  • 64.5 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP012792 33
  • 64.04 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes HSV2 34
  • 26 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons ATG18C 33
  • 51.15 (n)
rice
(Oryza sativa)
Liliopsida Os01g0168500 33
  • 54.45 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 63 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.576 33
Species where no ortholog for WDR45B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for WDR45B Gene

ENSEMBL:
Gene Tree for WDR45B (if available)
TreeFam:
Gene Tree for WDR45B (if available)

Paralogs for WDR45B Gene

Paralogs for WDR45B Gene

(3) SIMAP similar genes for WDR45B Gene using alignment to 5 proteins:

Pseudogenes.org Pseudogenes for WDR45B Gene

genes like me logo Genes that share paralogs with WDR45B: view

Variants for WDR45B Gene

Sequence variations from dbSNP and Humsavar for WDR45B Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs786205510 Likely pathogenic 82,619,074(-) AACTG(C/T)GAAGA nc-transcript-variant, reference, stop-gained
rs1000075676 -- 82,618,738(+) CAAAA(C/T)AAAAA intron-variant
rs1000235333 -- 82,623,761(+) AAAAA(C/T)GGGCA intron-variant
rs1000377304 -- 82,634,690(+) CCATA(C/T)GTGCA intron-variant
rs1000434233 -- 82,628,703(+) AAAAA(-/AC)ACACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for WDR45B Gene

Variant ID Type Subtype PubMed ID
esv1010132 CNV insertion 20482838
esv1510304 CNV insertion 17803354
esv21913 CNV gain+loss 19812545
esv2668610 CNV deletion 23128226
esv2675908 CNV deletion 23128226
esv2716511 CNV deletion 23290073
esv2716512 CNV deletion 23290073
esv2762577 CNV gain+loss 21179565
esv3448719 CNV insertion 20981092
esv3641433 CNV loss 21293372
esv3641435 CNV loss 21293372
nsv1062980 CNV gain 25217958
nsv1067194 CNV gain 25217958
nsv1067362 CNV gain 25217958
nsv1067553 CNV loss 25217958
nsv428351 CNV gain 18775914

Variation tolerance for WDR45B Gene

Residual Variation Intolerance Score: 18.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.45; 43.14% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for WDR45B Gene

Human Gene Mutation Database (HGMD)
WDR45B
SNPedia medical, phenotypic, and genealogical associations of SNPs for
WDR45B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for WDR45B Gene

Disorders for WDR45B Gene

MalaCards: The human disease database

(1) MalaCards diseases for WDR45B Gene - From: HGMD and DISEASES

Disorder Aliases PubMed IDs
spastic cerebral palsy
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for WDR45B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WDR45B
genes like me logo Genes that share disorders with WDR45B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for WDR45B Gene

Publications for WDR45B Gene

  1. WIPI-1alpha (WIPI49), a member of the novel 7-bladed WIPI protein family, is aberrantly expressed in human cancer and is linked to starvation-induced autophagy. (PMID: 15602573) Proikas-Cezanne T … Nordheim A (Oncogene 2004) 3 4 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  4. WIPI3 and WIPI4 β-propellers are scaffolds for LKB1-AMPK-TSC signalling circuits in the control of autophagy. (PMID: 28561066) Bakula D … Proikas-Cezanne T (Nature communications 2017) 3 60
  5. Defining the Protein-Protein Interaction Network of the Human Protein Tyrosine Phosphatase Family. (PMID: 27432908) Li X … Wang W (Molecular & cellular proteomics : MCP 2016) 3 60

Products for WDR45B Gene

Sources for WDR45B Gene

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