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WDR44 Gene

protein-coding GIFtS: 51

GC0XP117364

WD repeat domain 44
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
DKFZp686L20145 ^¹, ²
MGC26781 ^²
OTTHUMP00000023886 ^²
OTTHUMP00000062781 ^²
RAB11BP ^¹, ²
RPH11 ^¹, ²
Rabphilin-11 ^³

Descriptions
WD repeat domain 44 ^²
WD repeat domain 44 protein ^²

External Ids
HGNC: 30512¹
Entrez Gene: 54521²
UniProtKB: Q5JSH3³
Ensembl: ENSG00000131725⁷

Search outside databases for aliases for WDR44 gene

Previous GC identifer: GC0XP117261

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: WDR44_HUMAN, Q5JSH3

Function: Downstream effector for RAB11. May be involved in vesicle recycling (By similarity)

Gene Wiki entry for WDR44

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the WDR44 gene

Entrez Gene cytogenetic band: Xq24 Ensembl cytogenetic band: Xq24 HGNC cytogenetic band: Xq24

WDR44 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome X GeneLoc Exon Structure

GeneLoc location for GC0XP117364: (about GC identifiers)

Start:	117,364,070 bp from pter
End:	117,474,977 bp from pter
Size:	110,908 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000023.9 NT_011786.15

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: WDR44_HUMAN, Q5JSH3 (See protein sequence)

Recommended Name: WD repeat-containing protein 44

Size: 913 amino acids; 101366 Da

Subunit: Interacts with the GTP-bound form of RAB11 when membrane-associated. Does not bind to

other Rab and Rho small G proteins (By similarity)

Subcellular location: Cytoplasm, cytosol. Cytoplasm, perinuclear region. Endosome membrane. Golgi

apparatus, trans-Golgi network. Note=Colocalized with RAB11 along microtubules oriented toward

lamellipodia (By similarity)

Sequence caution: Sequence=BAA92015.1; Type=Frameshift; Positions=792;

Secondary accessions: Q0JS52 Q0JTF3 Q5JSH2 Q6ZSC1 Q7Z365 Q7Z3P6 Q8NAU8 Q8NHU5 Q9NUV4

Alternative splicing: 3 isoforms: Q5JSH3-1 Q5JSH3-2 Q5JSH3-3

Post-translational modifications:

Phosphorylated upon DNA damage, probably by ATM or ATR¹

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_061918.3

ENSEMBL proteins:

ENSP00000317678 ENSP00000360887 ENSP00000254029 ENSP00000360914 ENSP00000360890

Human Recombinant Proteins

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	Browse Abcam for Recombinant Proteins
	Browse Abnova for Human Recombinant Proteins

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

5 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005737	cytoplasm	IEA	--
GO:0005768	endosome	IEA	--
GO:0005794	Golgi apparatus	IEA	--
GO:0010008	endosome membrane	IEA	--
GO:0016020	membrane	IEA	--

About this table

Antibodies for WDR44:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
	Browse R&D Systems for Antibodies
	Search for antibodies at Abcam and the World's Antibody Gateway (free search engine of over 150 antibody companies)
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Novus Biologicals Antibodies for WDR44

Assays for WDR44:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry Q5JSH3

ProtoNet protein and cluster: Q5JSH3

UniProtKB/Swiss-Prot: WDR44_HUMAN, Q5JSH3

Similarity: Contains 7 WD repeats

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (WDR44)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (WDR44)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_019045

Applied Biosystems Silencer® siRNAs for WDR44

Sigma-Aldrich siRNA for WDR44

Sigma-Aldrich shRNA for WDR44

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_019045
Myc/DDK tagged cDNA clone in CMV expression vector: NM_019045
untagged cDNA clones in CMV expression vector (see all 3): NM_019045

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_019045

UniProtKB/Swiss-Prot: WDR44_HUMAN, Q5JSH3

Function: Downstream effector for RAB11. May be involved in vesicle recycling (By similarity)

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

2 Interacting proteins for WDR44 (ENSP00000360914³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
RAB11A	ENSP00000261890³	STRING (score=.851)
SEC13	ENSP00000336566³	STRING (score=.847)

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for WDR44

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (WDR44)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (WDR44)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_019045

Sigma-Aldrich siRNA for WDR44

Sigma-Aldrich shRNA for WDR44

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_019045

REFSEQ mRNAs for WDR44 gene:

NM_019045.3

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_019045

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_019045
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_019045
                                 untagged cDNA clones in CMV expression vector (see all 3): NM_019045

Additional cDNA sequence:

AK001978.1 AK023292.1 AK092077.1 AK127556.1 AK299711.1 AK304432.1 AL833605.1 AL834210.1

BC013924.1 BC028697.2 BX537578.1 BX538087.1 BX648150.1

8 DOTS entries:

DT.107510 DT.100727267 DT.91758262 DT.433975 DT.100021894 DT.92008178 DT.121324138 DT.99947417

24/81 AceView cDNA sequences (see all 81 ):

AW148385 BQ921584 AK092077 AI627346 BC028697 AA767059 BX538087 BX280516

BC013924 AL833605 BX648150 AA259020 NM_019045 AI074635 AW139472 AA426298

AW611931 BX470418 BU567735 AK127556 AL834210 BE871572 BX537578 BF115809

highest scoring ESTs for WDR44:

AI016239 AA259020 AA344633 AA426298 AA426299 AI074635 AK001978 AK092077 AK127556 AL833605

Unigene Cluster for WDR44:

WD repeat domain 44

Hs.98510 [show with all ESTs]

Unigene Representative Sequence: NM_019045

GeneLoc Exon Structure

5/6 Alternative Splicing Database (ASD) splice patterns (SP) for WDR44 (see all 6 )

ExUns:	1	^	2	^	3	^	4	^	5	^	6a	·	6b	^	7	^	8	^	9	^	10a	·	10b	^	11a	·	11b	^	12	^	13	^	14	^	15	^	16	^	17	^	18	^	19a	·	19b	^	20	^	21	^	22
SP1:																																																	-
SP2:																																											-						-
SP3:
SP4:																							-		-
SP5:			-

About this scheme

ECgene alternative splicing isoforms for WDR44

5 Ensembl transcripts including schematic representations:

ENST00000318919 ENST00000371822 ENST00000254029 ENST00000371848 ENST00000371825

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

WDR44 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for WDR44

¹ / ² / ³

4 probe-sets matching WDR44 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
56033_at²^{, 3}	U95-B	1	1.00	1.00	0.42	1.54	AI016239	1.00	1.00	1.00	1
67602_at²^{, 3}	U95-E	1	1.00	1.00	0.85	0.50	AI765537	0.60	1.00	0.82	1
219297_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_019045	0.60	1.00	0.82	1
219297_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: TTGTTGATGG

SOURCE GeneReport for Unigene cluster: Hs.98510

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for WDR44 gene from 5/13 species (see all 13 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	WDR44¹	--	WD repeat domain 44	92.91(n) 94.3(a)	481028 XM_538149.2 XP_538149.2
chimpanzee (Pan troglodytes)	WDR44¹	--	WD repeat domain 44	99.72(n) 99.72(a)	735788 XM_001135348.1 XP_001135348.1
cow (Bos taurus)	WDR44¹	--	WD repeat domain 44	93.2(n) 93.86(a)	286825 NM_174774.2 NP_777199.1
rat (Rattus norvegicus)	Wdr44¹	--	WD repeat domain 44	90.64(n) 92(a)	246152 XM_343761.3 XP_343762.2
mouse (Mus musculus)	Wdr44^{1, 5}	X⁵	WD repeat domain 44^{1, 5}	90.53(n)¹ 92.32(a)¹	72404¹ NM_175180.2¹ NP_780389.2¹ AK011669⁵ AK033628⁵ (see all 17)

About this table Species with no ortholog for WDR44

ENSEMBL Gene Tree for WDR44

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for WDR44 gene

AHI1²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/487 NCBI SNPs in WDR44 are shown (see all 487 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 110)

AB	SNP ID	Valid	Chr X pos	Sequence	Recs	AA Chg	Type	More	Recs	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--			--
	rs1781946^1,2	A,C,F,H	117363843(+)	`GTCGGG/CCGCGC`	1	--	ng5¹		5	EA WA MN	1548
	rs1716785^1,2	C,F,H	117364188(+)	`TTCCCT/CTACTG`	1	--	ut5¹ ese³ trp³		6	EU EA WA MN	1666
	rs17271416^1,2	C,F,H	117412084(+)	`TAACCG/ACAAGC`	1	T/A	mis¹ ese³		12	NA EU EA WA	810
	rs1716784^1,2	C,F	117364052(+)	`CGCCCA/GCGTAT`	1	--	ng5¹ tfbs³		3	MN EA	1436
--	rs17855531^1,2	H	117412105(+)	`AAAGTA/GCGGTT`	1	T/A	mis¹		4	EU EA WA	416
	rs5910348^1,2	H	117416378(+)	`TACAGT/GAATGA`	1	R/S	mis¹		4	EU EA WA	410
	rs5956050^1,2	A,C,F,H	117411048(+)	`TTTGCC/TGCTGT`	1	A/A	syn¹ ese³		8	EU EA WA NA	604
	rs6603401^1,2	C,F,H	117412170(+)	`GTTACT/CGCCCA`	1	T/T	syn¹ ese³		5	EU EA WA NA	452
	rs10521584^1,2	C,F,H	117450810(+)	`AAAAAC/TGCACC`	1	N/N	syn¹		14	NS EU EA WA NA	780
	rs17318100^1,2	C,F,H	117405366(+)	`AATGAG/ATCCCC`	1	E/E	syn¹ ese³		9	NA EA EU WA	712

About this table

HapMap Linkage Disequilibrium images for WDR44 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

Human Genome Epidemiology Navigator: WDR44 (1 document)

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/22 PubMed articles for WDR44 gene (see all 22 ):

A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243)^{3, 4} Beausoleil S.A.... Gygi S.P. (2006)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)^{3, 4} Olsen J.V....Mann M. (2006)
The DNA sequence of the human X chromosome. (PubMed id 15772651)^{3, 4} Ross M.T.... Bentley D.R. (2005)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{3, 4} Ota T....Sugano S. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)^{2, 3} Strausberg R.L....Marra M.A. (2002)
Coeliac disease associated risk variants in TNFAIP3 and REL implicate altered NF-{kappa}B signalling. (PubMed id 19240061)³ Trynka G....Wijmenga C. (2009)
Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis. (PubMed id 18220336)⁴ Cantin G.T....Yates J.R. III (2008)
Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976)⁴ Daub H.... Mann M. (2008)
A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)⁴ Dephoure N.... Gygi S.P. (2008)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 54521	HGNC: 30512	AceView: WDR44	Ensembl:ENSG00000131725	euGenes: HUgn54521
ECgene: WDR44	H-InvDB: WDR44

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for WDR44
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for WDR44:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for WDR44-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for WDR44		Browse antibodies at Sigma-Aldrich
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	Lentivirus-delivered shRNAs for WDR44		Browse small molecules at Sigma-Aldrich
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WDR44 Gene

protein-coding GIFtS: 51

Aliases &
Descriptions
for WDR44

Summaries
for WDR44

Genomic Location
for WDR44

Proteins
for WDR44

Protein Domains/
Families
for WDR44

Gene Function
for WDR44

Pathways & Interactions
for WDR44

Drugs & Compounds
for WDR44

Transcripts
for WDR44

Expression
for WDR44

Orthologs
for WDR44

Paralogs
for WDR44

SNPs/Variants
for WDR44

Disorders & Mutations
for WDR44

Medical News
for WDR44

Publications
for WDR44

Search for WDR44

Genome Databases showing WDR44

Other Databases showing WDR44

Specialized Databases showing WDR44

Licensable Technologies
for WDR44

Services
for WDR44

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

WDR44 Gene

protein-coding GIFtS: 51

Aliases & Descriptionsfor WDR44

Summariesfor WDR44

Genomic Locationfor WDR44

Proteinsfor WDR44

Protein Domains/Familiesfor WDR44

Gene Functionfor WDR44

Pathways & Interactionsfor WDR44

Drugs & Compoundsfor WDR44

Transcriptsfor WDR44

Expression for WDR44

Orthologsfor WDR44

Paralogsfor WDR44

SNPs/Variantsfor WDR44

Disorders & Mutationsfor WDR44

Medical Newsfor WDR44

Publicationsfor WDR44

Search for WDR44

Genome Databases showing WDR44

Other Databases showing WDR44

Specialized Databases showing WDR44

Licensable Technologiesfor WDR44

Servicesfor WDR44

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for WDR44

Summaries
for WDR44

Genomic Location
for WDR44

Proteins
for WDR44

Protein Domains/
Families
for WDR44

Gene Function
for WDR44

Pathways & Interactions
for WDR44

Drugs & Compounds
for WDR44

Transcripts
for WDR44

Expression
for WDR44

Orthologs
for WDR44

Paralogs
for WDR44

SNPs/Variants
for WDR44

Disorders & Mutations
for WDR44

Medical News
for WDR44

Publications
for WDR44

Licensable Technologies
for WDR44

Services
for WDR44