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Aliases & Descriptions for WDR4
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase , and/or 9 Nature :405,311-319 and CroW21)About This Section
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Descriptions WD repeat domain 4 2 , 9 WD repeat domain 4 protein 2 WD repeat-containing protein 4 2 , 3
Search outside databases for aliases for WDR4 genePrevious GC identifers: GC21M040810 GC21M043157
Summaries for WDR4 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for WDR4 : This gene encodes a member of the WD repeat protein family. WD repeats are minimally conservedregions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), whichmay facilitate formation of heterotrimeric or multiprotein complexes. Members of this family areinvolved in a variety of cellular processes, including cell cycle progression, signaltransduction, apoptosis, and gene regulation. This gene is excluded as a candidate for a form ofnonsyndromic deafness (DFNB10), but is still a candidate for other disorders mapped to 21q22.3 aswell as for the development of Down syndrome phenotypes. Two transcript variants encoding the sameprotein have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: WDR4_HUMAN, P57081 Function : Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In thecomplex, it is required to stabilize and induce conformational change of the catalytic subunit
Gene Wiki entry for WDR4
Genomic Location for WDR4
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences , Whole Chromsome Sequence According to
Nature (Cited Here with Permission) :405,311-319 and CroW21)About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 21q22.3 Ensembl cytogenetic band: 21q22.3 HGNC cytogenetic band: 21q22.3 Nature(405: 311-319) cytogenetic band: 21q22.3 WDR4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
GC21M043136:
GeneLoc
Nature :405,311-319
Start:
43,136,273 bp from pter
29,816,661 bp from centromere
End:
43,172,747 bp from pter
29,846,963 bp from centromere
Size:
36,475 bases
30,303 bases
Orientation:
minus strand
minus strand
RefSeq DNA sequence: NC_000021.7 NT_030188.4 Proteins for WDR4
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: WDR4_HUMAN, P57081 (See
protein sequence )Recommended Name: tRNA (guanine-N(7)-)-methyltransferase subunit WDR4 Size : 412 amino acids; 45490 Da
Subunit : Forms a complex with METTL1
Subcellular location : Nucleus
Secondary accessions : A8KA58 B2RCA3 B4DNQ7 Q9BVM5 Q9HCR3Alternative splicing : 3 isoforms : P57081-1 P57081-2 P57081-3
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_061139.2 NP_387510.1 ENSEMBL proteins: ENSP00000328671 ENSP00000381266 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: WDR4 1 Gene Ontology (GO) cellular component term (links to tree view) :
About this table Antibodies for WDR4: Assays for WDR4:
Protein
Domains/ Families for WDR4(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P57081 ProtoNet protein and cluster: P57081
UniProtKB/Swiss-Prot: WDR4_HUMAN, P57081 Similarity : Belongs to the WD repeat TRM82 familySimilarity : Contains 4 WD repeats
Gene Function for WDR4
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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RNAi Products ,
Clones , and
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_033661 Applied Biosystems Silencer ® siRNAs for WDR4 Sigma-Aldrich siRNA for WDR4 Sigma-Aldrich shRNA for WDR4 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_018669                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_018669                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_018669  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_018669 UniProtKB/Swiss-Prot: WDR4_HUMAN, P57081 Function : Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In thecomplex, it is required to stabilize and induce conformational change of the catalytic subunit
1 Gene Ontology (GO) molecular function term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0003674 molecular_function
ND --
About this table
Pathways & Interactions for WDR4
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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UniProtKB/Swiss-Prot: WDR4_HUMAN, P57081 Pathway : tRNA modification; N(7)-methylguanine-tRNA biosynthesis
2 Interacting proteins for WDR4 (P57081 2 ENSP00000328671 3 ) via UniProtKB, MINT, and/or STRING About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0008033 tRNA processing
IEA -- GO:0008150 biological_process
ND --
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Drugs & Compounds for WDR4 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for WDR4
Transcripts for WDR4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_033661 Sigma-Aldrich siRNA for WDR4 Sigma-Aldrich shRNA for WDR4 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_018669 NM_033661
REFSEQ mRNAs for WDR4 gene (2 alternative transcripts): NM_018669.4 NM_033661.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_018669 NM_033661
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_018669                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_018669                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_018669  
Additional cDNA sequence: AJ243912.1 AJ243913.1 AK056343.1 AK092786.1 AK292923.1 AK298015.1 AK315008.1 BC001074.2 BC006341.2 BC018866.2
12 DOTS entries : DT.85101595 DT.100846297 DT.95360576 DT.436160 DT.40130265 DT.95360578 DT.112419 DT.97854856 DT.121131946 DT.100031099 DT.95340656 DT.99983138
24/212 AceView cDNA sequences (see all 212
):AI291172 BE465439 AA371023 BX354062 AA776726 CF140521 BI908255 CR593887 NM_021075 AI609645 BM683940 AI570479 BP336670 AA877479 BM471674 CR616335 CR613268 BF726930 BI829092 AA725824 AA894770 BM905262 BM475614 AW007204
highest scoring ESTs for WDR4 :AI478255 AI631444 AI631689 AI826063 AJ243912 AJ243913 AW249251 BC001074 BC006341 BE264633
Unigene Cluster for WDR4: WD repeat domain 4 Hs.248815 [show with all ESTs ] Unigene Representative Sequence: AK092786 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for WDR4 (see all 6
) ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 SP1 :       -   -           -                 -     SP2 :     -   -   -       -     -                     SP3 :       -   -           -                     SP4 :               -     -                     SP5 :                                      
About this scheme ECgene alternative splicing isoforms for WDR4 2 Ensembl transcripts including schematic representations : ENST00000330317
ENST00000398208
Expression for WDR4
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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WDR4 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for WDR4 1 / 2 / 3
13 probe-sets matching WDR4 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CCAAGAAGATSOURCE GeneReport for Unigene cluster: Hs.248815
Orthologs for WDR4
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for WDR4 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for WDR4 ENSEMBL Gene Tree for WDR4 Paralogs for WDR4 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Pseudogenes 1 related pseudogene
SNPs/Variants for WDR4 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for WDR4 (up to first 250kb)
Disorders & Mutations for WDR4
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 605924
Medical News for WDR4 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for WDR4 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/11 PubMed articles for WDR4 gene (see all 11
): Two proteins that form a complex are required for 7-methylguanosine modification of yeast tRNA. (PubMed id 12403464) 1, 3, 4 Alexandrov A.... Phizicky E.M. (2002) Isolation and characterization of a human chromosome 21q22.3 gene (WDR4) and its mouse homologue that code for a WD-repeat protein. (PubMed id 10950928) 1, 3, 4 Michaud J.... Scott H.S. (2000) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) The tRNA methylase METTL1 is phosphorylated and inactivated by PKB and RSK in vitro and in cells. (PubMed id 15861136) 3, 4 Cartlidge R.A....Cohen P. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 4 Dephoure N.... Gygi S.P. (2008) Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins. (PubMed id 16780588) 3 Hu Y.H....Janitz M. (2006) Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514) 3 Rual J.F....Vidal M. (2005) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 3 Strausberg R.L....Marra M.A. (2002)
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Genome Databases showing WDR4
(According to
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and/or
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Specialized Databases showing WDR4 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for WDR4 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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