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Aliases for WDR36 Gene

Aliases for WDR36 Gene

  • WD Repeat Domain 36 2 3 5
  • T-Cell Activation WD Repeat-Containing Protein 3 4
  • TA-WDRP 3 4
  • T-Cell Activation WD Repeat Protein 3
  • WD Repeat-Containing Protein 36 3
  • Glaucoma 1, Open Angle, G 2
  • TAWDRP 3
  • UTP21 3
  • GLC1G 3

External Ids for WDR36 Gene

Previous HGNC Symbols for WDR36 Gene

  • GLC1G

Previous GeneCards Identifiers for WDR36 Gene

  • GC05P110505
  • GC05P110455
  • GC05P110427
  • GC05P105606

Summaries for WDR36 Gene

Entrez Gene Summary for WDR36 Gene

  • This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are involved in a variety of cellular processes, including cell cycle progression, signal transduction, apoptosis, and gene regulation. Mutations in this gene have been associated with adult-onset primary open-angle glaucoma (POAG). [provided by RefSeq, Jul 2008]

GeneCards Summary for WDR36 Gene

WDR36 (WD Repeat Domain 36) is a Protein Coding gene. Diseases associated with WDR36 include Glaucoma 1, Open Angle, G and Open-Angle Glaucoma. Among its related pathways are Gene Expression and rRNA processing in the nucleus and cytosol.

UniProtKB/Swiss-Prot for WDR36 Gene

  • Involved in the nucleolar processing of SSU 18S rRNA. Involved in T-cell activation and highly coregulated with IL2.

Gene Wiki entry for WDR36 Gene

Additional gene information for WDR36 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDR36 Gene

Genomics for WDR36 Gene

GeneHancer (GH) Regulatory Elements for WDR36 Gene

Promoters and enhancers for WDR36 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I111091 Promoter/Enhancer 1.6 Ensembl ENCODE 650.3 +1.1 1138 2.6 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 WDR36 ENSG00000253613 RPS3AP21 TSLP SLC25A46 TMEM232 BCLAF1P1 STARD4-AS1 GC05P111128
GH05I111223 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 16.5 +139.9 139938 16.7 HDGF PKNOX1 IRF4 ZNF121 GLIS2 ZNF207 ATF7 KLF7 FOS RUNX3 CAMK4 WDR36 RPS3AP21 ENSG00000249318 TSLP GC05M111236
GH05I111753 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 11.6 +664.7 664710 5.6 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ZFP64 ARID4B SIN3A FEZF1 NREP RPS3AP21 SNORA13 WDR36 BCLAF1P1 RN7SKP57 LOC105379122
GH05I111529 Enhancer 1.5 FANTOM5 Ensembl ENCODE 11.6 +439.1 439123 2.2 HDGF PKNOX1 ATF1 ARNT POLR2B CBX5 GATA2 ZNF143 ATF7 NCOA1 STARD4 SNORA13 RPS3AP21 WDR36 GC05M111479 STARD4-AS1 ENSG00000251099
GH05I111133 Enhancer 0.4 ENCODE 11.8 +42.9 42915 2 ZSCAN5C MNT HNF4A TSLP WDR36 GC05P111128 GC05M111139
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around WDR36 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the WDR36 gene promoter:

Genomic Locations for WDR36 Gene

Genomic Locations for WDR36 Gene
chr5:111,091,716-111,130,502
(GRCh38/hg38)
Size:
38,787 bases
Orientation:
Plus strand
chr5:110,427,414-110,466,200
(GRCh37/hg19)

Genomic View for WDR36 Gene

Genes around WDR36 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WDR36 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WDR36 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDR36 Gene

Proteins for WDR36 Gene

  • Protein details for WDR36 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NI36-WDR36_HUMAN
    Recommended name:
    WD repeat-containing protein 36
    Protein Accession:
    Q8NI36
    Secondary Accessions:
    • A2RUS4
    • Q68E02
    • Q8N1Q2

    Protein attributes for WDR36 Gene

    Size:
    951 amino acids
    Molecular mass:
    105322 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • Depletion of WDR36 mRNA in cultured cells causes apoptotic cell death and consistently associates with a reduced 21S rRNA and delay of 18S rRNA maturation.
    SequenceCaution:
    • Sequence=BAC04527.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for WDR36 Gene

Post-translational modifications for WDR36 Gene

  • Ubiquitination at isoforms=284, isoforms=413, isoforms=446, posLast=814814, isoforms=824, and posLast=839839

Other Protein References for WDR36 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for WDR36 Gene

Domains & Families for WDR36 Gene

Gene Families for WDR36 Gene

HGNC:
Human Protein Atlas (HPA):
  • Disease related genes
  • Predicted intracellular proteins

Suggested Antigen Peptide Sequences for WDR36 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NI36

UniProtKB/Swiss-Prot:

WDR36_HUMAN :
  • The WD repeats are grouped into two tandem seven-bladed beta-propeller regions.
Domain:
  • The WD repeats are grouped into two tandem seven-bladed beta-propeller regions.
genes like me logo Genes that share domains with WDR36: view

Function for WDR36 Gene

Molecular function for WDR36 Gene

UniProtKB/Swiss-Prot Function:
Involved in the nucleolar processing of SSU 18S rRNA. Involved in T-cell activation and highly coregulated with IL2.

Phenotypes From GWAS Catalog for WDR36 Gene

Gene Ontology (GO) - Molecular Function for WDR36 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding HDA,IDA 22658674
genes like me logo Genes that share ontologies with WDR36: view
genes like me logo Genes that share phenotypes with WDR36: view

Human Phenotype Ontology for WDR36 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for WDR36 Gene

MGI Knock Outs for WDR36:

Animal Model Products

CRISPR Products

miRNA for WDR36 Gene

miRTarBase miRNAs that target WDR36

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for WDR36 Gene

Localization for WDR36 Gene

Subcellular locations from UniProtKB/Swiss-Prot for WDR36 Gene

Nucleus, nucleolus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for WDR36 gene
Compartment Confidence
nucleus 5
cytosol 2
extracellular 1
mitochondrion 1
peroxisome 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for WDR36 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005634 nucleus IEA --
GO:0005654 nucleoplasm TAS --
GO:0005730 nucleolus IEA,IDA --
GO:0032040 small-subunit processome IBA --
genes like me logo Genes that share ontologies with WDR36: view

Pathways & Interactions for WDR36 Gene

genes like me logo Genes that share pathways with WDR36: view

Gene Ontology (GO) - Biological Process for WDR36 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001895 retina homeostasis IEA --
GO:0006364 rRNA processing IBA,TAS --
GO:0007601 visual perception IEA --
GO:0008150 biological_process ND --
GO:0030516 regulation of axon extension IEA --
genes like me logo Genes that share ontologies with WDR36: view

No data available for SIGNOR curated interactions for WDR36 Gene

Drugs & Compounds for WDR36 Gene

No Compound Related Data Available

Transcripts for WDR36 Gene

Unigene Clusters for WDR36 Gene

WD repeat domain 36:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for WDR36 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23a · 23b
SP1: -
SP2: - - -
SP3:

Relevant External Links for WDR36 Gene

GeneLoc Exon Structure for
WDR36
ECgene alternative splicing isoforms for
WDR36

Expression for WDR36 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WDR36 Gene

Protein differential expression in normal tissues from HIPED for WDR36 Gene

This gene is overexpressed in CD8 Tcells (7.2), Testis (7.2), and Fetal ovary (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for WDR36 Gene



Protein tissue co-expression partners for WDR36 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of WDR36 Gene:

WDR36

SOURCE GeneReport for Unigene cluster for WDR36 Gene:

Hs.533237

mRNA Expression by UniProt/SwissProt for WDR36 Gene:

Q8NI36-WDR36_HUMAN
Tissue specificity: Expressed in heart, placenta, liver, skeletal muscle, kidney and pancreas. In ocular tissues, strong expression in iris, sclera, ciliary muscle, ciliary body, retina and optic nerve.

Evidence on tissue expression from TISSUES for WDR36 Gene

  • Nervous system(4.6)
  • Eye(2.5)

Phenotype-based relationships between genes and organs from Gene ORGANizer for WDR36 Gene

Germ Layers:
  • ectoderm
Systems:
  • nervous
Organs:
Head and neck:
  • eye
  • head
genes like me logo Genes that share expression patterns with WDR36: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for WDR36 Gene

Orthologs for WDR36 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for WDR36 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia WDR36 33 34
  • 99.51 (n)
dog
(Canis familiaris)
Mammalia WDR36 33 34
  • 91.54 (n)
cow
(Bos Taurus)
Mammalia WDR36 33 34
  • 90.65 (n)
mouse
(Mus musculus)
Mammalia Wdr36 33 16 34
  • 86.85 (n)
rat
(Rattus norvegicus)
Mammalia LOC688637 33
  • 86.41 (n)
oppossum
(Monodelphis domestica)
Mammalia WDR36 34
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia WDR36 34
  • 75 (a)
OneToOne
chicken
(Gallus gallus)
Aves WDR36 33 34
  • 73.25 (n)
lizard
(Anolis carolinensis)
Reptilia WDR36 34
  • 72 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia wdr36 33
  • 67.72 (n)
Str.768 33
African clawed frog
(Xenopus laevis)
Amphibia MGC53182 33
zebrafish
(Danio rerio)
Actinopterygii wdr36 33 34
  • 65.43 (n)
wufb33e10 33
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.2846 33
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004557 33
  • 49.66 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG9799 34 33
  • 48.3 (n)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y45F10D.7 34
  • 28 (a)
OneToOne
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0B02827g 33
  • 46.42 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes UTP21 34 33
  • 46.33 (n)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AER081C 33
  • 45.46 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G04940 33
  • 48.31 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPCC1672.07 33
  • 47.71 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU07011 33
  • 43.82 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.11006 33
Species where no ortholog for WDR36 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for WDR36 Gene

ENSEMBL:
Gene Tree for WDR36 (if available)
TreeFam:
Gene Tree for WDR36 (if available)

Paralogs for WDR36 Gene

(1) SIMAP similar genes for WDR36 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with WDR36: view

No data available for Paralogs for WDR36 Gene

Variants for WDR36 Gene

Sequence variations from dbSNP and Humsavar for WDR36 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs10041326 benign, Primary open angle glaucoma 111,125,600(+) T/G intron_variant
rs1026762523 uncertain-significance, Primary open angle glaucoma 111,125,616(+) G/A coding_sequence_variant, missense_variant
rs1029726069 uncertain-significance, Primary open angle glaucoma 111,129,527(+) A/G 3_prime_UTR_variant
rs1043828 benign, Primary open angle glaucoma 111,128,310(+) T/C 3_prime_UTR_variant
rs1050732745 uncertain-significance, Primary open angle glaucoma 111,127,333(+) A/C 3_prime_UTR_variant

Structural Variations from Database of Genomic Variants (DGV) for WDR36 Gene

Variant ID Type Subtype PubMed ID
dgv10004n54 CNV gain 21841781
dgv10005n54 CNV gain 21841781
dgv1637e212 CNV gain 25503493
dgv1638e212 CNV gain 25503493
dgv5779n100 CNV gain 25217958
dgv5780n100 CNV gain 25217958
dgv5781n100 CNV gain 25217958
esv2763483 CNV gain 21179565
esv3606259 CNV loss 21293372
esv3606262 CNV loss 21293372
esv3606263 CNV gain 21293372
nsv1028053 CNV gain 25217958
nsv1031124 CNV loss 25217958
nsv519338 CNV gain 19592680
nsv599362 CNV gain 21841781
nsv599364 CNV gain 21841781
nsv599365 CNV loss 21841781

Variation tolerance for WDR36 Gene

Residual Variation Intolerance Score: 18.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.81; 66.98% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for WDR36 Gene

Human Gene Mutation Database (HGMD)
WDR36
SNPedia medical, phenotypic, and genealogical associations of SNPs for
WDR36

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for WDR36 Gene

Disorders for WDR36 Gene

MalaCards: The human disease database

(8) MalaCards diseases for WDR36 Gene - From: HGMD, OMIM, ClinVar, GTR, Swiss-Prot, DISEASES, Novoseek, and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search WDR36 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

WDR36_HUMAN
  • Glaucoma 1, open angle, G (GLC1G) [MIM:609887]: A form of primary open angle glaucoma (POAG). POAG is characterized by a specific pattern of optic nerve and visual field defects. The angle of the anterior chamber of the eye is open, and usually the intraocular pressure is increased. However, glaucoma can occur at any intraocular pressure. The disease is generally asymptomatic until the late stages, by which time significant and irreversible optic nerve damage has already taken place. {ECO:0000269 PubMed:15677485, ECO:0000269 PubMed:18172102}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Additional Disease Information for WDR36

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with WDR36: view

No data available for Genatlas for WDR36 Gene

Publications for WDR36 Gene

  1. Identification of a novel adult-onset primary open-angle glaucoma (POAG) gene on 5q22.1. (PMID: 15677485) Monemi S … Sarfarazi M (Human molecular genetics 2005) 2 3 4 22 58
  2. Multiple gene polymorphisms analysis revealed a different profile of genetic polymorphisms of primary open-angle glaucoma in northern Chinese. (PMID: 19145250) Jia LY … Wang NL (Molecular vision 2009) 3 22 44 58
  3. Different WDR36 mutation pattern in Chinese patients with primary open-angle glaucoma. (PMID: 19347049) Fan BJ … Pang CP (Molecular vision 2009) 3 22 44 58
  4. [Genetic variants of CYP1B1 and WDR36 in the patients with primary congenital glaucoma and primary open angle glaucoma from Saint-Petersburg]. (PMID: 20198978) Motushchuk AE … Vasil'ev VB (Genetika 2009) 3 22 44 58
  5. Profiling of WDR36 missense variants in German patients with glaucoma. (PMID: 18172102) Pasutto F … Reis A (Investigative ophthalmology & visual science 2008) 3 4 44 58

Products for WDR36 Gene

Sources for WDR36 Gene

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