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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

WDR31 Gene

protein-coding   GIFtS: 46
GCID: GC09M116077

WD Repeat Domain 31

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
WD Repeat Domain 311 2
Similar To Spermatid WD-Repeat Protein1
WD Repeat-Containing Protein 312

External Ids:    HGNC: 214211   Entrez Gene: 1149872   Ensembl: ENSG000001482257   UniProtKB: Q8NA233   

Export aliases for WDR31 gene to outside databases

Previous GC identifers: GC09M111451 GC09M113155 GC09M115115 GC09M085685


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for WDR31 Gene:
This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of
approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation
of heterotrimeric or multiprotein complexes. Members of this family are involved in a variety of cellular
processes, including cell cycle progression, signal transduction, apoptosis, and gene regulation. Multiple
alternatively spliced transcript variants encoding distinct isoforms have been found for this gene but the
biological validity of some variants has not been determined. (provided by RefSeq, Jul 2008)

GeneCards Summary for WDR31 Gene: 
WDR31 (WD repeat domain 31) is a protein-coding gene. Diseases associated with WDR31 include myocardial infarction. An important paralog of this gene is GNB2L1.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000009.11  NT_008470.19  NC_018920.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the WDR31 gene promoter:
         c-Fos   AP-1   NF-kappaB   Max   NF-kappaB2   HFH-1   FOXO1a   c-Jun   NF-kappaB1   c-Myc   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidWDR31 promoter sequence
   Search SABiosciences Chromatin IP Primers for WDR31

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat WDR31


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q32   Ensembl cytogenetic band:  9q32   HGNC cytogenetic band: 9q33.1

WDR31 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
WDR31 gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09M116077:  view genomic region     (about GC identifiers)

Start:
116,075,502 bp from pter      End:
116,102,620 bp from pter
Size:
27,119 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: WDR31_HUMAN, Q8NA23 (See protein sequence)
Recommended Name: WD repeat-containing protein 31  
Size: 367 amino acids; 40840 Da
Secondary accessions: Q5W0T9 Q96EG8
Alternative splicing: 2 isoforms:  Q8NA23-1   Q8NA23-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for WDR31: NX_Q8NA23

Explore proteomics data for WDR31 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q8NA23

  • WDR31 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    WDR31 Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_001012361.1  NP_660284.1  

    ENSEMBL proteins: 
     ENSP00000345027   ENSP00000363308   ENSP00000420074   ENSP00000419246   ENSP00000363310  

    Human Recombinant Protein Products for WDR31: 
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    Novus Biologicals WDR31 Lysate
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    Cloud-Clone Corp. ELISAs for WDR31 
    Cloud-Clone Corp. CLIAs for WDR31


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    WDR: WD repeat domain containing

    5 InterPro protein domains:
     IPR019775 WD40_repeat_CS
     IPR001680 WD40_repeat
     IPR020472 G-protein_beta_WD-40_rep
     IPR017986 WD40_repeat_dom
     IPR015943 WD40/YVTN_repeat-like_dom

    Graphical View of Domain Structure for InterPro Entry Q8NA23

    ProtoNet protein and cluster: Q8NA23

    UniProtKB/Swiss-Prot: WDR31_HUMAN, Q8NA23
    Similarity: Contains 5 WD repeats


    WDR31 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    WDR31 for ontologies           About GeneDecksing


    Phenotypes:
         2 GenomeRNAi human phenotypes for WDR31:
     Decreased cell number  Increased gamma-H2AX phosphory 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for WDR31 
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    miRNA
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    hsa-miR-141 hsa-miR-205* hsa-miR-200a hsa-miR-578 hsa-miR-589 hsa-miR-410
    SwitchGear 3'UTR luciferase reporter plasmidWDR31 3' UTR sequence
    Inhib. RNA
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for WDR31

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for WDR31

    Search CenterWatch for drugs/clinical trials and news about WDR31

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for WDR31 gene (3 alternative transcripts): 
    NM_001012361.2  NM_145241.3  NM_001006615.1  

    Unigene Cluster for WDR31:

    WD repeat domain 31
    Hs.133331  [show with all ESTs]
    Unigene Representative Sequence: BC012352
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000341761 ENST00000374193(uc004bhc.3 uc004bhe.3 uc004bhd.3)
    ENST00000461942(uc004bhf.3) ENST00000465205 ENST00000465979 ENST00000374195

    miRNA
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    6 QIAGEN miScript miRNA Assays for microRNAs that regulate WDR31:
    hsa-miR-141 hsa-miR-205* hsa-miR-200a hsa-miR-578 hsa-miR-589 hsa-miR-410
    SwitchGear 3'UTR luciferase reporter plasmidWDR31 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
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    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat WDR31
    Clone
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    OriGene ORF clones in mouse, rat for WDR31
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    GenScript: all cDNA clones in your preferred vector (see all 2): WDR31 (NM_145241)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for WDR31
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat WDR31
    Sirion Biotech Customized lentivirus for stable overexpression of WDR31 
                         Customized lentivirus expression plasmids for stable overexpression of WDR31 
    Primer
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    OriGene qPCR primer pairs and template standards for WDR31
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat WDR31
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat WDR31

    Additional mRNA sequence: 

    AK074891.1 AK093240.1 AK129868.1 AK313843.1 AL833635.1 BC012352.1 BC022982.1 

    4 DOTS entries:

    DT.99975519  DT.219379  DT.307283  DT.121146844 

    24/50 AceView cDNA sequences (see all 50):

    AK093240 BF939134 BM554160 BC012352 BG152821 AA889286 AI831366 AI052127 
    BM554244 BE645646 AX748007 T84392 NM_145241 BF939191 AI091187 BF939192 
    BF589326 BF361157 AA776710 AK074891 AL833635 BX279630 AA448186 BG539988 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for WDR31    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11a · 11b
    SP1:                                                              -                           
    SP2:                                                              -                           
    SP3:                          -                                                               
    SP4:                                -                             -                           


    ECgene alternative splicing isoforms for WDR31

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    WDR31 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TGCTGGATTA
    WDR31 Expression
    About this image


    See WDR31 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for WDR31

    SOURCE GeneReport for Unigene cluster: Hs.133331
        SABiosciences Custom PCR Arrays for WDR31
    Primer
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    OriGene qPCR primer pairs and template standards for WDR31
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for WDR31

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals and fungi.

    Orthologs for WDR31 gene from 6/12 species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Wdr311 , 5 WD repeat domain 311, 5 85.1(n)1
    83.11(a)1
      4 (33.14 cM)5
    713541  NM_023597.11  NP_076086.11 
     624486535 
    chicken
    (Gallus gallus)
    Aves WDR311 WD repeat domain 31 67.73(n)
    66.13(a)
      417271  XM_415545.3  XP_415545.3 
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.172692 Xenopus laevis transcribed sequence with weak similarity more 74.24(n)    BM262502.1 
    zebrafish
    (Danio rerio)
    Actinopterygii si:ch73-266o15.41 si:ch73-266o15.4 59.65(n)
    53.8(a)
      568862  NM_001100037.1  NP_001093507.1 
    worm
    (Caenorhabditis elegans)
    Secernentea T05A8.56
    Protein T05A8.5
    24(a)
    1 ↔ 1
    II(2731319-2735250)
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes ASC16
    G-protein beta subunit and guanine nucleotide diss...
    21(a)
    1 → many
    XIII(499456-500688)


    ENSEMBL Gene Tree for WDR31 (if available)
    TreeFam Gene Tree for WDR31 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for WDR31 gene
    GNB2L12  
    4 SIMAP similar genes for WDR31 using alignment to 4 protein entries:     WDR31_HUMAN (see all proteins):
    WDR83    GNB2L1    POC1B    WSB1

    WDR31 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/547 SNPs in WDR31 are shown (see all 547)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 9 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1165321771,2
    F--116077447(+) TGGATC/TACTTG 2 -- ds50011Minor allele frequency- T:0.03WA 118
    rs2006482271,2
    C--116077506(+) TGGTG-/GTGCATG 2 -- ds50010--------
    rs123380291,2
    C,F--116077514(+) CATGCC/GTGCAG 2 -- ds50017Minor allele frequency- G:0.15NA CSA WA 247
    rs1821050051,2
    --116077589(+) AGCCAG/TGATCA 2 -- ds50010--------
    rs78647881,2
    C,F,A--116077629(+) GTCAGC/TCACTG 2 -- ds500110Minor allele frequency- T:0.45NA WA CSA EA 370
    rs1854190211,2
    --116077663(+) GAGAAG/TACAAA 2 -- ds50010--------
    rs1493339711,2
    --116077691(+) GCTGGG/TACTTG 2 -- ds50010--------
    rs126843851,2
    C,F,H--116077694(+) GGGACT/GTGTCA 2 -- ds500122Minor allele frequency- G:0.09NS EA NA 2262
    rs1128422321,2
    C,F--116077728(+) GATGGC/TGTCAC 2 -- ds50011Minor allele frequency- T:0.00CSA 1
    rs78495131,2
    C,F,A,H--116077811(+) GGACCT/AGTGAG 2 -- ds500115Minor allele frequency- A:0.47NS EA NA WA CSA 779

    HapMap Linkage Disequilibrium report for WDR31 (116075502 - 116102620 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for WDR31:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv521449CNV Loss19592680
    nsv893744CNV Gain21882294
    esv6353CNV Gain19470904


    Human Gene Mutation Database (HGMD): WDR31
    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing WDR31
    DNA2.0 Custom Variant and Variant Library Synthesis for WDR31

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    2 diseases for WDR31:    About MalaCards
    myocardial infarction    


    WDR31 for disorders           About GeneDecksing

    Genetic Association Database (GAD): WDR31
    Human Genome Epidemiology (HuGE) Navigator: WDR31 (2 documents)

    Export disorders for WDR31 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for WDR31 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with WDR31)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Gene variants associated with ischemic stroke: the cardiovascular health study. (PubMed id 19023099)1, 4 Luke M.M....Psaty B.M. (2009)
    2. Association of gene variants with incident myocardial infarction in the Cardiovascular Health Study. (PubMed id 17975119)1, 4 Shiffman D....Psaty B.M. (2008)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
    6. DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)2 Humphray S.J.... Dunham I. (2004)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    8. The nucleotide sequence of phenylalanine tRNA2 of Drosophila melanogaster: four isoacceptors with one basic sequence. (PubMed id 114987)1 Altwegg M. and Kubli E. (1979)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 114987 HGNC: 21421 AceView: WDR31 Ensembl:ENSG00000148225 euGenes: HUgn114987
    ECgene: WDR31 H-InvDB: WDR31

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for WDR31 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for WDR31 gene:
    Search GeneIP for patents involving WDR31

    GeneCards and IP:
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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