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WDR3 Gene

protein-coding GIFtS: 56

GC01P118184

WD repeat domain 3
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
FLJ12796 ^¹, ²
OTTHUMP00000014051 ^²

Descriptions
WD repeat domain 3 ^²
WD repeat-containing protein 3 ^²
dJ776P7.2 (WD repeat domain 3) ^²

External Ids
HGNC: 12755¹
Entrez Gene: 10885²
UniProtKB: Q9UNX4³
Ensembl: ENSG00000065183⁷

Search outside databases for aliases for WDR3 gene

Previous GC identifers: GC01P118934 GC01P117313 GC01P117622 GC01P117822 GC01P117818

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for WDR3:

This gene encodes a nuclear protein containing 10 WD repeats. WD repeats are approximately 30- to

40-amino acid domains containing several conserved residues, which usually include a trp-asp at

the C-terminal end. Proteins belonging to the WD repeat family are involved in a variety of

cellular processes, including cell cycle progression, signal transduction, apoptosis, and gene

regulation. [provided by RefSeq]

Gene Wiki entry for WDR3

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the WDR3 gene

Entrez Gene cytogenetic band: 1p13-p12 Ensembl cytogenetic band: 1p12 HGNC cytogenetic band: 1p12

WDR3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure

GeneLoc location for GC01P118184: (about GC identifiers)

Start:	118,273,914 bp from pter
End:	118,304,572 bp from pter
Size:	30,659 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000001.9 NT_019273.18

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: WDR3_HUMAN, Q9UNX4 (See protein sequence)

Recommended Name: WD repeat-containing protein 3

Size: 943 amino acids; 106099 Da

Subcellular location: Nucleus, nucleolus

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_006775.1

ENSEMBL proteins:

ENSP00000308179 ENSP00000358449

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (WDR3)
	Browse Abnova for Human Recombinant Proteins

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	TAS	10395803
GO:0032040	small-subunit processome	IEA	--

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Antibodies for WDR3:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (WDR3), each with their Abpromise^SM
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Novus Biologicals Antibody for WDR3

Assays for WDR3:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry Q9UNX4

ProtoNet protein and cluster: Q9UNX4

1 Blocks protein family: IPB007148 Dip2/Utp12

UniProtKB/Swiss-Prot: WDR3_HUMAN, Q9UNX4

Similarity: Belongs to the WD repeat WDR3/UTP12 family

Similarity: Contains 13 WD repeats

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (WDR3)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): BC058836

Applied Biosystems Silencer® siRNAs for WDR3

Sigma-Aldrich siRNA for WDR3

Sigma-Aldrich shRNA for WDR3

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_006784
Myc/DDK tagged cDNA clone in CMV expression vector: NM_006784
untagged cDNA clones in CMV expression vector (see all 2): BC058836

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_006784

Genatlas biochemistry entry for WDR3:

WD repeat domain 3,expressed in hematopoietic cell lines and in non hematopoietic tissues,involved

in cell cycle progression,apoptosis gene regulation

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

1 Interacting protein for WDR3 (Q9UNX4²) via UniProtKB, MINT, and/or STRING
Interactant Interaction Details
GeneCard External ID(s)
PDE10A Q9Y233² MINT-65786
About this table
1 Gene Ontology (GO) biological process term (links to tree view):
GO ID Qualified GO term Evidence PubMed IDs
GO:0006364 rRNA processing IEA --
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for WDR3

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (WDR3)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): BC058836

Sigma-Aldrich siRNA for WDR3

Sigma-Aldrich shRNA for WDR3

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_006784

REFSEQ mRNAs for WDR3 gene:

NM_006784.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_006784

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006784
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_006784
                                 untagged cDNA clones in CMV expression vector (see all 2): BC058836

Additional cDNA sequence:

AB209201.1 AF083217.1 AK022858.1 AK292438.1 BC058836.1 BC128385.1 BC128454.1 BC148244.1

CR620639.1

11 DOTS entries:

DT.95370125 DT.412006 DT.121463746 DT.100022302 DT.100748877 DT.319947 DT.423063 DT.302646

DT.40290469 DT.95271952 DT.206431

24/111 AceView cDNA sequences (see all 111 ):

AI697107 AA423985 BE745523 BU608104 BM469992 CB244006 AA743286 H42014

AA481598 AI922229 BU167311 AU124711 AA481532 AI624692 H42013 BG105708

BU685685 BE505015 AA417908 AI492156 BF062207 AA916500 BM471651 BU160827

highest scoring ESTs for WDR3:

AI880771 AA258068 AA278565 AA423984 AA423985 AA481598 AA522577 AA523223 AA743286 AA775806

Unigene Cluster for WDR3:

WD repeat domain 3

Hs.310809 [show with all ESTs]

Unigene Representative Sequence: NM_006784

GeneLoc Exon Structure

5/9 Alternative Splicing Database (ASD) splice patterns (SP) for WDR3 (see all 9 )

ExUns:	1a	·	1b	^	2	^	3	^	4	^	5a	·	5b	^	6	^	7a	·	7b	^	8a	·	8b	^	9	^	10	^	11	^	12	^	13a	·	13b	·	13c	^	14a	·	14b	^	15	^	16	^	17a	·	17b	^	18	^
SP1:
SP2:					-		-		-				-
SP3:
SP4:
SP5:

ExUns:	19	^	20	^	21	^	22	^	23	^	24	^	25	^	26	^	27	^	28	^	29	^	30	^	31	^	32
SP1:
SP2:
SP3:																									-
SP4:
SP5:

About this scheme

ECgene alternative splicing isoforms for WDR3

2 Ensembl transcripts including schematic representations:

ENST00000349139 ENST00000369441

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

WDR3 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for WDR3

¹ / ² / ³

3 probe-sets matching WDR3 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
64096_at²^{, 3}	U95-C	1	1.00	1.00	1.00	1.00	AI880771	1.00	1.00	1.00	1
218882_s_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_006784	0.60	1.00	0.82	1
218882_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: GATCTTAGAG

SOURCE GeneReport for Unigene cluster: Hs.310809
UniProtKB/Swiss-Prot: WDR3_HUMAN, Q9UNX4
Tissue specificity: Ubiquitous

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for WDR3 gene from 5/21 species (see all 21 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	WDR3¹	--	WD repeat domain 3	90.1(n) 93.43(a)	483143 XM_540261.2 XP_540261.2
cow (Bos taurus)	WDR3¹	--	WD repeat domain 3	91.09(n) 94.49(a)	514870 XM_592784.3 XP_592784.3
rat (Rattus norvegicus)	Wdr3¹	--	WD repeat domain 3	84.87(n) 90.65(a)	310720 XM_227527.3 XP_227527.2
mouse (Mus musculus)	Wdr3^{1, 5}	3⁵	WD repeat domain 3^{1, 5}	85.76(n)¹ 91.18(a)¹	269470¹ NM_175552.3¹ NP_780761.1¹ AK043557⁵ AK050738⁵ (see all 11)
chicken (Gallus gallus)	WDR3¹	--	WD repeat domain 3	75.16(n) 80.28(a)	427952 NM_001031485.1 NP_001026656.1

About this table Species with no ortholog for WDR3

ENSEMBL Gene Tree for WDR3

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for WDR3 gene

TBL3² PLRG1² RRP9²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/79 NCBI SNPs in WDR3 are shown (see all 79 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 49)

AB	SNP ID	Valid	Chr 1 pos	Sequence	Recs	AA Chg	Type	More	Recs	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--			--
	rs3738420^1,2	C,F,H	118284997(+)	`CAGACC/GCCAAG`	1	P/A	mis¹ ese³		9	EU EA WA NA	890
	rs34973445^1,2	C	118283672(+)	`TGGGGC/TCTCAG`	1	A/V	mis¹		1	NA	42
	rs2295630^1,2	C,F,H	118296676(+)	`CAGGGT/GCATCA`	1	G/G	syn¹ ese³		5	EA EU WA	1912
	rs34411361^1,2	F	118292625(+)	`GCTTTG/ATGGTC`	1	L/L	syn¹		1	NA	44
	rs2295629^1,2	A,C,F,H,O	118294050(+)	`TTGACG/ATCTTA`	1	--	int¹		5	EA EU WA	1710
	rs1321665^1,2	A,C,F,H,O	118275748(+)	`gtggaA/Caggac`	1	--	int¹		8	EA NA EU WA	570
	rs1321666^1,2	A,C,F,H,O	118293575(+)	`ACAAAT/CCTAGA`	1	--	int¹		9	MN EU EA NA	2292
	rs10923448^1,2	A,C,F,H	118282114(+)	`AGCAAT/CGGACA`	1	--	int¹		8	EU EA WA	836
	rs12075590^1,2	A,C,F,H	118276255(+)	`AACAGA/GTGGGA`	1	--	int¹		7	EU EA WA NA	542
--	rs6680844^1,2	A,C,F	118279606(+)	`AAGTAC/TCAATG`	1	--	int¹		4	EA NA	212

About this table

HapMap Linkage Disequilibrium images for WDR3 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 604737

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/12 PubMed articles for WDR3 gene (see all 12 ):

Cloning and expression analysis of a novel WD repeat gene, WDR3, mapping to 1p12-p13. (PubMed id 10395803)^{2, 3, 4} Claudio J.O....Hawley R.G. (1999)
Phosphoproteome analysis of the human mitotic spindle. (PubMed id 16565220)^{3, 4} Nousiainen M.... Koerner R. (2006)
Functional proteomic analysis of human nucleolus. (PubMed id 12429849)^{3, 4} Scherl A.... Diaz J.-J. (2002)
A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)⁴ Dephoure N.... Gygi S.P. (2008)
Tyrosine phosphorylated Par3 regulates epithelial tight junction assembly promoted by EGFR signaling. (PubMed id 17053785)⁴ Wang Y.... Chen Z. (2006)
Nucleolar proteome dynamics. (PubMed id 15635413)³ Andersen J.S....Mann M. (2005)
Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556)³ Suzuki Y.... Sugano S. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)³ Ota T....Sugano S. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Directed proteomic analysis of the human nucleolus. (PubMed id 11790298)³ Andersen J.S.... Lamond A.I. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 10885	HGNC: 12755	AceView: WDR3	Ensembl:ENSG00000065183	euGenes: HUgn10885
ECgene: WDR3	H-InvDB: WDR3

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for WDR3
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for WDR3:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for WDR3-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for WDR3		Browse antibodies at Sigma-Aldrich
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	Lentivirus-delivered shRNAs for WDR3		Browse small molecules at Sigma-Aldrich
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WDR3 Gene

protein-coding GIFtS: 56

Aliases &
Descriptions
for WDR3

Summaries
for WDR3

Genomic Location
for WDR3

Proteins
for WDR3

Protein Domains/
Families
for WDR3

Gene Function
for WDR3

Pathways & Interactions
for WDR3

Drugs & Compounds
for WDR3

Transcripts
for WDR3

Expression
for WDR3

Orthologs
for WDR3

Paralogs
for WDR3

SNPs/Variants
for WDR3

Disorders & Mutations
for WDR3

Medical News
for WDR3

Publications
for WDR3

Search for WDR3

Genome Databases showing WDR3

Other Databases showing WDR3

Specialized Databases showing WDR3

Licensable Technologies
for WDR3

Services
for WDR3

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

WDR3 Gene

protein-coding GIFtS: 56

Aliases & Descriptionsfor WDR3

Summariesfor WDR3

Genomic Locationfor WDR3

Proteinsfor WDR3

Protein Domains/Familiesfor WDR3

Gene Functionfor WDR3

Pathways & Interactionsfor WDR3

Drugs & Compoundsfor WDR3

Transcriptsfor WDR3

Expression for WDR3

Orthologsfor WDR3

Paralogsfor WDR3

SNPs/Variantsfor WDR3

Disorders & Mutationsfor WDR3

Medical Newsfor WDR3

Publicationsfor WDR3

Search for WDR3

Genome Databases showing WDR3

Other Databases showing WDR3

Specialized Databases showing WDR3

Licensable Technologiesfor WDR3

Servicesfor WDR3

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for WDR3

Summaries
for WDR3

Genomic Location
for WDR3

Proteins
for WDR3

Protein Domains/
Families
for WDR3

Gene Function
for WDR3

Pathways & Interactions
for WDR3

Drugs & Compounds
for WDR3

Transcripts
for WDR3

Expression
for WDR3

Orthologs
for WDR3

Paralogs
for WDR3

SNPs/Variants
for WDR3

Disorders & Mutations
for WDR3

Medical News
for WDR3

Publications
for WDR3

Licensable Technologies
for WDR3

Services
for WDR3