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Aliases for WDR20 Gene

Aliases for WDR20 Gene

  • WD Repeat Domain 20 2 3 5
  • WD Repeat-Containing Protein 20 3
  • Protein DMR 4
  • DMR 3

External Ids for WDR20 Gene

Previous GeneCards Identifiers for WDR20 Gene

  • GC14P096421
  • GC14P100596
  • GC14P101675
  • GC14P102606
  • GC14P082785
  • GC14P102146
  • GC14P102147
  • GC14P102252
  • GC14P102286

Summaries for WDR20 Gene

Entrez Gene Summary for WDR20 Gene

  • This gene encodes a WD repeat-containing protein that functions to preserve and regulate the activity of the USP12-UAF1 deubiquitinating enzyme complex. Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jun 2011]

GeneCards Summary for WDR20 Gene

WDR20 (WD Repeat Domain 20) is a Protein Coding gene. Among its related pathways are Metabolism of proteins and Deubiquitination. An important paralog of this gene is DMWD.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDR20 Gene

Genomics for WDR20 Gene

Regulatory Elements for WDR20 Gene

Enhancers for WDR20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F102084 1.8 FANTOM5 Ensembl ENCODE 11.1 -52.8 -52772 5.1 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 HSP90AA1 RPL26P4 WDR20 ZNF839 CDC42BPB RCOR1 MOK PIR41764 GC14P102751
GH14F101970 1.7 FANTOM5 Ensembl ENCODE 10.1 -166.9 -166922 3.6 PKNOX1 ARID4B SIN3A FEZF1 ZNF2 YY1 FOS DEK ZNF263 SP5 HSP90AA1 WDR20 ENSG00000271780 ZNF839 DYNC1H1 PPP2R5C ENSG00000259013 ENSG00000258959
GH14F102190 1.2 Ensembl ENCODE 11.3 +51.4 51416 1.8 ELF3 TBP ARID4B RAD21 RARA ZNF121 GATA4 GATA2 CREM MIXL1 WDR20 HSP90AA1 ZNF839 LOC105370677
GH14F102184 1.2 Ensembl ENCODE 11.3 +47.0 46998 4.2 PKNOX1 ARID4B SIN3A ZNF121 FOS SP5 ZHX2 PPARG ATF4 SMARCA4 MOK HSP90AA1 WDR20 LOC105370677
GH14F102179 1.2 Ensembl ENCODE 11.2 +42.1 42085 3.6 HDAC1 ATF1 PKNOX1 TBL1XR1 ARNT ZEB1 GATA2 ZNF366 SCRT2 CREM MOK HSP90AA1 WDR20 ZNF839 LOC105370677
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WDR20 on UCSC Golden Path with GeneCards custom track

Promoters for WDR20 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000424015 498 3200 HDGF WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS ZNF263

Genomic Location for WDR20 Gene

Chromosome:
14
Start:
102,139,503 bp from pter
End:
102,224,847 bp from pter
Size:
85,345 bases
Orientation:
Plus strand

Genomic View for WDR20 Gene

Genes around WDR20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WDR20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WDR20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDR20 Gene

Proteins for WDR20 Gene

  • Protein details for WDR20 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TBZ3-WDR20_HUMAN
    Recommended name:
    WD repeat-containing protein 20
    Protein Accession:
    Q8TBZ3
    Secondary Accessions:
    • B4DN18
    • E7EUY8
    • F8W9S4
    • G3V2F8
    • G3V5R0
    • H0YJJ1
    • Q86TU2
    • Q8NCN7
    • Q8WXX2
    • Q9UF86

    Protein attributes for WDR20 Gene

    Size:
    569 amino acids
    Molecular mass:
    62893 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAL56014.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for WDR20 Gene

    Alternative splice isoforms for WDR20 Gene

neXtProt entry for WDR20 Gene

Post-translational modifications for WDR20 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

  • Abcam antibodies for WDR20
  • Santa Cruz Biotechnology (SCBT) Antibodies for WDR20

No data available for DME Specific Peptides for WDR20 Gene

Domains & Families for WDR20 Gene

Gene Families for WDR20 Gene

Protein Domains for WDR20 Gene

Graphical View of Domain Structure for InterPro Entry

Q8TBZ3

UniProtKB/Swiss-Prot:

WDR20_HUMAN :
  • Contains 7 WD repeats.
Similarity:
  • Contains 7 WD repeats.
genes like me logo Genes that share domains with WDR20: view

Function for WDR20 Gene

Gene Ontology (GO) - Molecular Function for WDR20 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25814554
genes like me logo Genes that share ontologies with WDR20: view
genes like me logo Genes that share phenotypes with WDR20: view

Animal Model Products

miRNA for WDR20 Gene

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for WDR20 Gene

Localization for WDR20 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for WDR20 gene
Compartment Confidence
nucleus 5
cytosol 3
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for WDR20 Gene

Pathways & Interactions for WDR20 Gene

genes like me logo Genes that share pathways with WDR20: view

Pathways by source for WDR20 Gene

Gene Ontology (GO) - Biological Process for WDR20 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016579 protein deubiquitination IBA --
genes like me logo Genes that share ontologies with WDR20: view

No data available for SIGNOR curated interactions for WDR20 Gene

Transcripts for WDR20 Gene

Unigene Clusters for WDR20 Gene

WD repeat domain 20:
Representative Sequences:

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for WDR20 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g · 1h · 1i ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b · 12c ^ 13a · 13b · 13c ·
SP1: - - - - - - - - - - - - - - - -
SP2: - - - - - - - - - - - - -
SP3: - - - - - - - - - -
SP4: - - - - - - - - - -
SP5: - - - - - - - - - - -
SP6: - - - -
SP7: - - - - - - - - -
SP8: - - - - - - - - - - - -
SP9: - - - - - - - - - - -
SP10: - - - - - - - - - -
SP11: - - - - - - - - - - - - - -
SP12: - - - - - - - - - -
SP13: - - - - - - - - - - - - - - - - -
SP14: - - - - - - - -
SP15: - - - - - - -
SP16: - - - - -
SP17: - - - -
SP18: - - - - - - - - - - - -
SP19: - -
SP20: - - - - - - - - - - - - - - - - - -
SP21: - - - - - - - - - - - - -

ExUns: 13d · 13e · 13f · 13g · 13h ^ 14 ^ 15 ^ 16
SP1: - - - - -
SP2:
SP3:
SP4:
SP5: - - -
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13: - - - - - - -
SP14:
SP15:
SP16:
SP17:
SP18:
SP19:
SP20: - - - - - -
SP21:

Relevant External Links for WDR20 Gene

GeneLoc Exon Structure for
WDR20
ECgene alternative splicing isoforms for
WDR20

Expression for WDR20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for WDR20 Gene

Protein differential expression in normal tissues from HIPED for WDR20 Gene

This gene is overexpressed in Platelet (26.0), Frontal cortex (8.6), Fetal Brain (8.1), and NK cells (6.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for WDR20 Gene



Protein tissue co-expression partners for WDR20 Gene

NURSA nuclear receptor signaling pathways regulating expression of WDR20 Gene:

WDR20

SOURCE GeneReport for Unigene cluster for WDR20 Gene:

Hs.36859
genes like me logo Genes that share expression patterns with WDR20: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for WDR20 Gene

Orthologs for WDR20 Gene

This gene was present in the common ancestor of animals.

Orthologs for WDR20 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia WDR20 34 35
  • 99.66 (n)
mouse
(Mus musculus)
Mammalia Wdr20a 35
  • 98 (a)
OneToMany
Wdr20 34 16
  • 93.5 (n)
Wdr20b 35
  • 93 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia WDR20 35
  • 97 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia WDR20 35
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Wdr20 34
  • 93.98 (n)
cow
(Bos Taurus)
Mammalia WDR20 34 35
  • 89.5 (n)
dog
(Canis familiaris)
Mammalia WDR20 34 35
  • 87.89 (n)
chicken
(Gallus gallus)
Aves WDR20 34 35
  • 88.56 (n)
lizard
(Anolis carolinensis)
Reptilia WDR20 35
  • 97 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia wdr20 34
  • 82.86 (n)
Str.15335 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.12032 34
zebrafish
(Danio rerio)
Actinopterygii wdr20a 35
  • 84 (a)
OneToMany
si:dkey-241l7.1 34
  • 75.59 (n)
wdr20b 35
  • 71 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG6420 34 35
  • 55.97 (n)
worm
(Caenorhabditis elegans)
Secernentea hpo-22 34
  • 49.64 (n)
wdr-20 35
  • 32 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 41 (a)
OneToMany
Species where no ortholog for WDR20 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for WDR20 Gene

ENSEMBL:
Gene Tree for WDR20 (if available)
TreeFam:
Gene Tree for WDR20 (if available)

Paralogs for WDR20 Gene

Paralogs for WDR20 Gene

(2) SIMAP similar genes for WDR20 Gene using alignment to 8 proteins:

genes like me logo Genes that share paralogs with WDR20: view

Variants for WDR20 Gene

Sequence variations from dbSNP and Humsavar for WDR20 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1002957 -- 102,177,734(-) AACTG(A/C)GGAAG intron-variant, upstream-variant-2KB
rs1004012 -- 102,205,181(-) caggc(C/T)gaagc intron-variant, upstream-variant-2KB
rs1004783 -- 102,203,675(+) CTCCT(A/G)CCTCC intron-variant, downstream-variant-500B
rs10083330 -- 102,208,211(+) GTCCT(C/T)GTAGA intron-variant
rs10130436 -- 102,173,900(+) ttagc(C/T)gggcg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for WDR20 Gene

Variant ID Type Subtype PubMed ID
dgv25n68 CNV loss 17160897
esv22037 CNV gain 19812545
esv2665920 CNV deletion 23128226
esv2668977 CNV deletion 23128226
esv2669943 CNV deletion 23128226
esv2678767 CNV deletion 23128226
esv3552075 CNV deletion 23714750
esv3552076 CNV deletion 23714750
esv3635544 CNV loss 21293372
esv3635545 CNV loss 21293372
esv3635546 CNV loss 21293372
esv3635547 CNV gain 21293372
nsv1071172 CNV deletion 25765185
nsv1429 CNV deletion 18451855
nsv473296 CNV novel sequence insertion 20440878
nsv512376 CNV loss 21212237
nsv819548 CNV loss 19587683
nsv565947 CNV gain 21841781

Variation tolerance for WDR20 Gene

Residual Variation Intolerance Score: 12% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.74; 32.99% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for WDR20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WDR20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for WDR20 Gene

Disorders for WDR20 Gene

Relevant External Links for WDR20

Genetic Association Database (GAD)
WDR20
Human Genome Epidemiology (HuGE) Navigator
WDR20
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WDR20

No disorders were found for WDR20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WDR20 Gene

Publications for WDR20 Gene

  1. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 46 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. Downregulation of WDR20 due to loss of 14q is involved in the malignant transformation of clear cell renal cell carcinoma. (PMID: 26790128) Takahashi M. … Moriyama M. (Cancer Sci. 2016) 3 64
  5. Usp12 stabilizes the T-cell receptor complex at the cell surface during signaling. (PMID: 26811477) Jahan A.S. … Sanyal S. (Proc. Natl. Acad. Sci. U.S.A. 2016) 3 64

Products for WDR20 Gene

Sources for WDR20 Gene

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