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Aliases & Descriptions for WDR19
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| FLJ23127 1, 2 | | KIAA1638 1, 2, 3 | | ORF26 1, 2 | | PWDMP 2 | | Pwdmp 1 |
| | | Descriptions |
|---|
| WD repeat domain 19 2 | | WD repeat membrane protein PWDMP 2 |
|
| | Search outside databases for aliases for WDR19 genePrevious GC identifers: GC00U991193 GC04P039006 |
Summaries for WDR19(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for WDR19: This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are involved in a variety of cellular processes, including cell cycle progression, signal transduction, apoptosis, and gene regulation. This protein contains six WD repeats, a clathrin heavy-chain repeat, and three transmembrane domains. This gene is conserved from C. elegans to human. It may participate in androgen-regulated signaling mechanisms or in the vesicular trafficking of androgen-regulated secretory processes. Alternatively spliced transcript variants encoding distinct isoforms have been reported but the full-length nature of one of these variants has not been defined. [provided by RefSeq]
|
Genomic Location for WDR19
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the WDR19 gene 
Entrez Gene cytogenetic band: 4p14 Ensembl cytogenetic band: 4p14 HGNC cytogenetic band: 4p14WDR19 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04P038860:
(about GC identifiers)
Start:
|
38,858,173 bp from pter |
End:
|
38,963,825 bp from pter |
Size:
|
105,653 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000004.10 NT_016297.15
| Proteins for WDR19
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: WDR19_HUMAN, Q8NEZ3 (See
protein sequence)Recommended Name: WD repeat-containing protein 19 Size: 1342 amino acids; 151581 Da
Developmental stage: Expressed in fetal lung
Secondary accessions: Q8N5B4 Q9H5S0 Q9HCD4Alternative splicing: 2 isoforms: Q8NEZ3-1 Q8NEZ3-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_079408.3
ENSEMBL proteins: ENSP00000382730 ENSP00000288634 ENSP00000382717
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
Antibodies for WDR19: Assays for WDR19: | Protein
Domains/ Families for WDR19(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q8NEZ3
ProtoNet protein and cluster: Q8NEZ3 UniProtKB/Swiss-Prot: WDR19_HUMAN, Q8NEZ3Similarity: Contains 6 TPR repeatsSimilarity: Contains 6 WD repeats | Gene Function for WDR19
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_025132
Applied Biosystems Silencer® siRNAs for WDR19
Sigma-Aldrich siRNA for WDR19  Sigma-Aldrich shRNA for WDR19  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_025132                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_025132                                  untagged cDNA clone in CMV expression vector: NM_025132 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_025132
UniProtKB/Swiss-Prot: WDR19_HUMAN, Q8NEZ3Induction: By androgenic hormones. Expression increased 3-fold in an androgen-stimulated androgen-sensitive prostate adenocarcinoma cell line compared with androgen-deprived cells1 Gene Ontology (GO) molecular function term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005515 | protein binding |
IEA | -- | About this table | Pathways & Interactions for WDR19
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Interacting protein for WDR19 (ENSP000002886343) via UniProtKB, MINT, and/or STRINGAbout this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006886 | intracellular protein transport |
IEA | -- | | GO:0016192 | vesicle-mediated transport |
IEA | -- | About this table
|
Drugs & Compounds for WDR19(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for WDR19
|
Transcripts for WDR19(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_025132
Sigma-Aldrich siRNA for WDR19  Sigma-Aldrich shRNA for WDR19  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_025132 REFSEQ mRNAs for WDR19 gene: NM_025132.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_025132               OriGene GFP tagged cDNA clone in CMV expression vector: NM_025132                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_025132                                  untagged cDNA clone in CMV expression vector: NM_025132  Additional cDNA sequence: AB046858.1 AK026780.1 AK225588.1 AK294730.1 AK296112.1 AK304161.1 AK308803.1 AY029257.1 BC032578.1 BC131501.1 12 DOTS entries: DT.114006 DT.92040399 DT.100026571 DT.100755175 DT.92416906 DT.92057945 DT.99971287 DT.92418702 DT.100736238 DT.121259470 DT.95343830 DT.97839733 24/97 AceView cDNA sequences (see all 97
):BU948584 AW450839 BU621014 BP376333 AA281901 AA281724 AA445953 BQ923434 AB046858 BM719838 BU686662 BU679219 AL702961 AI969388 AA934791 AA363808 BQ181511 AL711455 AY029257 BQ950404 BU948827 BE046347 NM_025132 AA363807
highest scoring ESTs for WDR19:AA581393 AA007605 AA281724 AA464597 AA653325 AA858065 AA934791 AI355348 AI769134 AI969388 Unigene Cluster for WDR19: WD repeat domain 19 Hs.438482 [show with all ESTs]Unigene Representative Sequence: NM_025132
GeneLoc Exon Structure
3 Ensembl transcripts including schematic representations: ENST00000399836
ENST00000288634
ENST00000399820
|
Expression for WDR19
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| WDR19 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for WDR19
1 / 2 / 3 6 probe-sets matching WDR19 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TAACCTTGCT
SOURCE GeneReport for Unigene cluster: Hs.438482 UniProtKB/Swiss-Prot: WDR19_HUMAN, Q8NEZ3Tissue specificity: Some isoforms are tissue-specific. Highly expressed in the prostate. Lower expression in the cerebellum, pituitary gland, fetal lung, and pancreas. In normal prostate, expressed in both basal and luminal epithelial cells. No expression detected in fibromuscular stromal cells, endothelial cells, or infiltrating lymphocytes. Uniformed expression in prostate adenocarcinoma cells |
Orthologs for WDR19
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for WDR19 gene from 5/11 species (see all 11
)
About this table Species with no ortholog for WDR19
ENSEMBL Gene Tree for WDR19 | Paralogs for WDR19(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for WDR19(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for WDR19 (up to first 250kb)
|
Disorders & Mutations for WDR19
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 608151
|
Medical News for WDR19(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for WDR19 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 9 PubMed articles for WDR19 gene:- Isolation and characterization of human and mouse WDR19,a novel WD- repeat protein exhibiting androgen-regulated expression in prostate epithelium. (PubMed id 12906858)1, 2, 3, 4 Lin B.... Nelson P.S. (2003)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10997877)3, 4 Nagase T....Ohara O. (2000)
- WDR19 expression is increased in prostate cancer compared with normal cells, but low-intensity expression in cancers is associated with shorter time to biochemical failures and local recurrence. (PubMed id 18316561)3 Lin B....Akslen L.A. (2008)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)3 Strausberg R.L....Marra M.A. (2002)
- Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PubMed id 12168954)4 Nakajima D.... Nagase T. (2002)
- Construction and characterization of a full length-enriched and a 5'- end-enriched cDNA library. (PubMed id 9373149)3 Suzuki Y.... Sugano S. (1997)
- Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PubMed id 8125298)3 Maruyama K. and Sugano S. (1994)
|
Search for WDR19
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing WDR19
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing WDR19
(According to HUGE)
About This Section
| |
Specialized Databases showing WDR19(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for WDR19(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for WDR19:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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