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Aliases for WDR19 Gene

Aliases for WDR19 Gene

  • WD Repeat Domain 19 2 3
  • Intraflagellar Transport 144 Homolog (Chlamydomonas) 2
  • Intraflagellar Transport 144 Homolog 3
  • WD Repeat Membrane Protein PWDMP 3
  • KIAA1638 4
  • IFT144 3
  • NPHP13 3
  • DYF-2 3
  • ORF26 3
  • Oseg6 3
  • PWDMP 3
  • SRTD5 3
  • ATD5 3
  • CED4 3

External Ids for WDR19 Gene

Previous GeneCards Identifiers for WDR19 Gene

  • GC00U991193
  • GC04P039006
  • GC04P038860
  • GC04P038508

Summaries for WDR19 Gene

Entrez Gene Summary for WDR19 Gene

  • This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are involved in a variety of cellular processes, including cell cycle progression, signal transduction, apoptosis, and gene regulation. This protein contains six WD repeats, a clathrin heavy-chain repeat, and three transmembrane domains. This gene is conserved from C. elegans to human. It may participate in androgen-regulated signaling mechanisms or in the vesicular trafficking of androgen-regulated secretory processes. Alternatively spliced transcript variants encoding distinct isoforms have been reported but the full-length nature of one of these variants has not been defined. [provided by RefSeq, Jul 2008]

GeneCards Summary for WDR19 Gene

WDR19 (WD Repeat Domain 19) is a Protein Coding gene. Diseases associated with WDR19 include nephronophthisis 13 and cranioectodermal dysplasia 4. Among its related pathways are Signaling by GPCR and Organelle biogenesis and maintenance.

UniProtKB/Swiss-Prot for WDR19 Gene

  • Component of the IFT complex A (IFT-A), a complex required for retrograde ciliary transport. Involved in cilia function and/or assembly (By similarity).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDR19 Gene

Genomics for WDR19 Gene

Regulatory Elements for WDR19 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for WDR19 Gene

Chromosome:
4
Start:
39,182,189 bp from pter
End:
39,285,810 bp from pter
Size:
103,622 bases
Orientation:
Plus strand

Genomic View for WDR19 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for WDR19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDR19 Gene

Proteins for WDR19 Gene

  • Protein details for WDR19 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NEZ3-WDR19_HUMAN
    Recommended name:
    WD repeat-containing protein 19
    Protein Accession:
    Q8NEZ3
    Secondary Accessions:
    • B5MEF2
    • Q8N5B4
    • Q9H5S0
    • Q9HCD4

    Protein attributes for WDR19 Gene

    Size:
    1342 amino acids
    Molecular mass:
    151581 Da
    Quaternary structure:
    • Component of the IFT complex A (IFT-A).
    SequenceCaution:
    • Sequence=AAH32578.1; Type=Frameshift; Positions=421; Evidence={ECO:0000305};

    Alternative splice isoforms for WDR19 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for WDR19 Gene

Proteomics data for WDR19 Gene at MOPED

Post-translational modifications for WDR19 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for WDR19 Gene

Domains & Families for WDR19 Gene

Protein Domains for WDR19 Gene

Graphical View of Domain Structure for InterPro Entry

Q8NEZ3

UniProtKB/Swiss-Prot:

WDR19_HUMAN :
  • Contains 6 TPR repeats.
Similarity:
  • Contains 6 TPR repeats.
  • Contains 6 WD repeats.
genes like me logo Genes that share domains with WDR19: view

Function for WDR19 Gene

Molecular function for WDR19 Gene

UniProtKB/Swiss-Prot Function:
Component of the IFT complex A (IFT-A), a complex required for retrograde ciliary transport. Involved in cilia function and/or assembly (By similarity).
UniProtKB/Swiss-Prot Induction:
By androgenic hormones. Expression increased 3-fold in an androgen-stimulated androgen-sensitive prostate adenocarcinoma cell line compared with androgen-deprived cells.

Gene Ontology (GO) - Molecular Function for WDR19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with WDR19: view
genes like me logo Genes that share phenotypes with WDR19: view

Animal Model Products

miRNA for WDR19 Gene

miRTarBase miRNAs that target WDR19

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for WDR19

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for WDR19 Gene

Localization for WDR19 Gene

Subcellular locations from UniProtKB/Swiss-Prot for WDR19 Gene

Cell projection, cilium. Cytoplasm, cytoskeleton, cilium basal body. Note=Localizes to photoreceptor connecting cilia, to the base of motile cilia in brain ependymal cells and to the base of and along primary cilia in kidney cells. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for WDR19 Gene COMPARTMENTS Subcellular localization image for WDR19 gene
Compartment Confidence
nucleus 4
cytoskeleton 3

Gene Ontology (GO) - Cellular Components for WDR19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
GO:0005929 cilium IBA --
GO:0030991 intraciliary transport particle A IDA 20889716
genes like me logo Genes that share ontologies with WDR19: view

Pathways & Interactions for WDR19 Gene

genes like me logo Genes that share pathways with WDR19: view

Interacting Proteins for WDR19 Gene

Gene Ontology (GO) - Biological Process for WDR19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006996 organelle organization TAS --
GO:0035721 intraciliary retrograde transport IMP 20889716
GO:0042384 cilium assembly IBA --
genes like me logo Genes that share ontologies with WDR19: view

No data available for SIGNOR curated interactions for WDR19 Gene

Drugs & Compounds for WDR19 Gene

No Compound Related Data Available

Transcripts for WDR19 Gene

Unigene Clusters for WDR19 Gene

WD repeat domain 19:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for WDR19

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for WDR19 Gene

No ASD Table

Relevant External Links for WDR19 Gene

GeneLoc Exon Structure for
WDR19
ECgene alternative splicing isoforms for
WDR19

Expression for WDR19 Gene

mRNA expression in normal human tissues for WDR19 Gene

Protein differential expression in normal tissues from HIPED for WDR19 Gene

This gene is overexpressed in Plasma (22.6), Bone marrow stromal cell (21.7), Heart (8.2), and Ovary (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for WDR19 Gene



SOURCE GeneReport for Unigene cluster for WDR19 Gene Hs.438482

mRNA Expression by UniProt/SwissProt for WDR19 Gene

Q8NEZ3-WDR19_HUMAN
Tissue specificity: Some isoforms are tissue-specific. Highly expressed in the prostate. Lower expression in the cerebellum, pituitary gland, fetal lung, and pancreas. In normal prostate, expressed in both basal and luminal epithelial cells. No expression detected in fibromuscular stromal cells, endothelial cells, or infiltrating lymphocytes. Uniformed expression in prostate adenocarcinoma cells.
genes like me logo Genes that share expression patterns with WDR19: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Protein tissue co-expression partners for WDR19 Gene

Orthologs for WDR19 Gene

This gene was present in the common ancestor of animals.

Orthologs for WDR19 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia WDR19 35
  • 90.31 (n)
  • 91.57 (a)
WDR19 36
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia WDR19 35
  • 91.23 (n)
  • 92.53 (a)
WDR19 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Wdr19 35
  • 86.18 (n)
  • 89.63 (a)
Wdr19 16
Wdr19 36
  • 90 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia WDR19 35
  • 99.65 (n)
  • 99.85 (a)
WDR19 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Wdr19 35
  • 85.58 (n)
  • 89.93 (a)
oppossum
(Monodelphis domestica)
Mammalia WDR19 36
  • 86 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia WDR19 36
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves WDR19 35
  • 78.06 (n)
  • 82.5 (a)
WDR19 36
  • 82 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia WDR19 36
  • 79 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii Dr.20003 35
wdr19 35
  • 70.77 (n)
  • 76.62 (a)
wdr19 36
  • 76 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010418 35
  • 35.92 (n)
  • 22.58 (a)
fruit fly
(Drosophila melanogaster)
Insecta Oseg6 35
  • 50.65 (n)
  • 42.39 (a)
Oseg6 36
  • 41 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea dyf-2 35
  • 49.97 (n)
  • 40.91 (a)
dyf-2 36
  • 38 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.14432 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 57 (a)
OneToOne
Species with no ortholog for WDR19:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for WDR19 Gene

ENSEMBL:
Gene Tree for WDR19 (if available)
TreeFam:
Gene Tree for WDR19 (if available)

Paralogs for WDR19 Gene

(1) SIMAP similar genes for WDR19 Gene using alignment to 9 proteins:

genes like me logo Genes that share paralogs with WDR19: view

No data available for Paralogs for WDR19 Gene

Variants for WDR19 Gene

Sequence variations from dbSNP and Humsavar for WDR19 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
VAR_053424 -
VAR_067312 Short-rib thoracic dysplasia 5 with or without polydactyly (SRTD5)
VAR_067313 Nephronophthisis 13 (NPHP13)
VAR_067314 Cranioectodermal dysplasia 4 (CED4)
VAR_067314 Senior-Loken syndrome 8 (SLSN8)

Structural Variations from Database of Genomic Variants (DGV) for WDR19 Gene

Variant ID Type Subtype PubMed ID
nsv878940 CNV Gain 21882294
esv2424590 CNV Deletion 19546169
esv2615856 CNV Deletion 19546169

Variation tolerance for WDR19 Gene

Residual Variation Intolerance Score: 37.94% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.72; 73.19% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for WDR19 Gene

HapMap Linkage Disequilibrium report
WDR19
Human Gene Mutation Database (HGMD)
WDR19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for WDR19 Gene

Disorders for WDR19 Gene

MalaCards: The human disease database

(16) MalaCards diseases for WDR19 Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
nephronophthisis 13
  • nphp13
cranioectodermal dysplasia 4
  • sensenbrenner syndrome 4
short-rib thoracic dysplasia 5 with or without polydactyly
  • asphyxiating thoracic dystrophy 5
senior-loken syndrome 8
  • slsn8
asphyxiating thoracic dystrophy
  • jeune syndrome
- elite association
Search WDR19 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

WDR19_HUMAN
  • Cranioectodermal dysplasia 4 (CED4) [MIM:614378]: A disorder primarily characterized by craniofacial, skeletal and ectodermal abnormalities. Clinical features include craniosynostosis, narrow rib cage, short limbs, brachydactyly, hypoplastic and widely spaced teeth, sparse hair, skin laxity and abnormal nails. Nephronophthisis leading to progressive renal failure, hepatic fibrosis, heart defects, and retinitis pigmentosa have also been described. {ECO:0000269 PubMed:22019273}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Nephronophthisis 13 (NPHP13) [MIM:614377]: An autosomal recessive disorder resulting in end-stage renal disease. It is a progressive tubulo-interstitial kidney disorder histologically characterized by modifications of the tubules with thickening of the basement membrane, interstitial fibrosis and, in the advanced stages, medullary cysts. {ECO:0000269 PubMed:22019273}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Senior-Loken syndrome 8 (SLSN8) [MIM:616307]: A renal-retinal disorder characterized by progressive wasting of the filtering unit of the kidney (nephronophthisis), with or without medullary cystic renal disease, and progressive eye disease. Typically this disorder becomes apparent during the first year of life. {ECO:0000269 PubMed:23559409, ECO:0000269 PubMed:23683095}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Short-rib thoracic dysplasia 5 with or without polydactyly (SRTD5) [MIM:614376]: A form of short-rib thoracic dysplasia, a group of autosomal recessive ciliopathies that are characterized by a constricted thoracic cage, short ribs, shortened tubular bones, and a trident appearance of the acetabular roof. Polydactyly is variably present. Non-skeletal involvement can include cleft lip/palate as well as anomalies of major organs such as the brain, eye, heart, kidneys, liver, pancreas, intestines, and genitalia. Some forms of the disease are lethal in the neonatal period due to respiratory insufficiency secondary to a severely restricted thoracic cage, whereas others are compatible with life. Disease spectrum encompasses Ellis-van Creveld syndrome, asphyxiating thoracic dystrophy (Jeune syndrome), Mainzer-Saldino syndrome, and short rib-polydactyly syndrome. {ECO:0000269 PubMed:22019273}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for WDR19

Genetic Association Database (GAD)
WDR19
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WDR19
genes like me logo Genes that share disorders with WDR19: view

No data available for Genatlas for WDR19 Gene

Publications for WDR19 Gene

  1. Isolation and characterization of human and mouse WDR19,a novel WD- repeat protein exhibiting androgen-regulated expression in prostate epithelium. (PMID: 12906858) Lin B. … Nelson P.S. (Genomics 2003) 2 23 67
  2. Ciliopathies with skeletal anomalies and renal insufficiency due to mutations in the IFT-A gene WDR19. (PMID: 22019273) Bredrup C. … Arts H.H. (Am. J. Hum. Genet. 2011) 2 67
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  4. Heritability and genetic association analysis of cognition in theA Diabetes Heart Study. (PMID: 24684796) Cox A.J. … Bowden D.W. (Neurobiol. Aging 2014) 67
  5. Mutations in WDR19 encoding the intraflagellar transport component IFT144 cause a broad spectrum of ciliopathies. (PMID: 24504730) Fehrenbach H. … Bergmann C. (Pediatr. Nephrol. 2014) 67

Products for WDR19 Gene

Sources for WDR19 Gene

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