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WDR19 Gene

protein-coding   GIFtS: 51

GC04P038860
WD repeat domain 19
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
FLJ23127 1, 2
KIAA1638 1, 2, 3
ORF26 1, 2
PWDMP 2
Pwdmp 1
Descriptions
WD repeat domain 19 2
WD repeat membrane protein PWDMP 2
External Ids
HGNC: 183401
Entrez Gene: 577282
UniProtKB: Q8NEZ33
Ensembl: ENSG000001577967
Search outside databases for aliases for WDR19 gene

Previous GC identifers: GC00U991193 GC04P039006

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for WDR19:
This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved
regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which
may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are
involved in a variety of cellular processes, including cell cycle progression, signal
transduction, apoptosis, and gene regulation. This protein contains six WD repeats, a clathrin
heavy-chain repeat, and three transmembrane domains. This gene is conserved from C. elegans to
human. It may participate in androgen-regulated signaling mechanisms or in the vesicular
trafficking of androgen-regulated secretory processes. Alternatively spliced transcript variants
encoding distinct isoforms have been reported but the full-length nature of one of these variants
has not been defined. [provided by RefSeq]

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the WDR19 gene  

Entrez Gene cytogenetic band: 4p14   Ensembl cytogenetic band:  4p14   HGNC cytogenetic band: 4p14

WDR19 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P038860:     (about GC identifiers)

Start:
38,858,173 bp from pter
End:
38,963,825 bp from pter
Size:
105,653 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000004.10  NT_016297.15  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: WDR19_HUMAN, Q8NEZ3 (See protein sequence)
Recommended Name: WD repeat-containing protein 19  
Size: 1342 amino acids; 151581 Da
Developmental stage: Expressed in fetal lung
Secondary accessions: Q8N5B4 Q9H5S0 Q9HCD4
Alternative splicing: 2 isoforms:  Q8NEZ3-1   Q8NEZ3-2   

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_079408.3  

    ENSEMBL proteins: 
    ENSP00000382730 ENSP00000288634 ENSP00000382717 


    Human Recombinant Proteins 
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    Recombinant Proteins from Abcam (WDR19)
    Human Recombinant Proteins from Abnova (WDR19)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 


    Antibodies for WDR19: 
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    Antibodies from Abcam (WDR19), each with their AbpromiseSM
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    Novus Biologicals Antibodies for WDR19

    Assays for WDR19: 
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    Browse Kits and Assays available from Millipore
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    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    5/6 InterPro domains/families (see all 6 ):
     IPR011990 TPR-like_helical
     IPR019775 WD40_repeat_CS
     IPR000547 Clathrin_H-chain/VPS_repeat
     IPR001680 WD40_repeat
     IPR017986 WD40_repeat_region


       GeneDecks  WDR19 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q8NEZ3

    ProtoNet protein and cluster: Q8NEZ3

    UniProtKB/Swiss-Prot: WDR19_HUMAN, Q8NEZ3
    Similarity: Contains 6 TPR repeats
    Similarity: Contains 6 WD repeats

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (WDR19)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (WDR19)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_025132

                  Applied Biosystems Silencer® siRNAs for WDR19

                  Sigma-Aldrich siRNA for WDR19  
                         Sigma-Aldrich shRNA for WDR19  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for WDR19
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_025132
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_025132
                                     untagged cDNA clone in CMV expression vector: NM_025132 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_025132

    UniProtKB/Swiss-Prot: WDR19_HUMAN, Q8NEZ3
    Induction: By androgenic hormones. Expression increased 3-fold in an androgen-stimulated
    androgen-sensitive prostate adenocarcinoma cell line compared with androgen-deprived cells

    1 Gene Ontology (GO) molecular function term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515 protein binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section



    1 Interacting protein for WDR19 (ENSP000002886343) via UniProtKB, MINT, and/or STRING
    InteractantInteraction Details
    GeneCardExternal ID(s)
    VIL1ENSP000002484443STRING (score=.7)
    About this table

    2 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006886 intracellular protein transport IEA--
    GO:0016192 vesicle-mediated transport IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for WDR19

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (WDR19)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (WDR19)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_025132

                  Sigma-Aldrich siRNA for WDR19  
                         Sigma-Aldrich shRNA for WDR19  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_025132  

    REFSEQ mRNAs for WDR19 gene: 

    NM_025132.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_025132  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_025132
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_025132
                                     untagged cDNA clone in CMV expression vector: NM_025132 

    Additional cDNA sequence: 

    AB046858.1 AK026780.1 AK225588.1 AK294730.1 AK296112.1 AK304161.1 AK308803.1 AY029257.1 
    BC032578.1 BC131501.1 

    12 DOTS entries:

    DT.114006  DT.92040399  DT.100026571  DT.100755175  DT.92416906  DT.92057945  DT.99971287  DT.92418702 
    DT.100736238  DT.121259470  DT.95343830  DT.97839733 

    24/97 AceView cDNA sequences (see all 97 ):

    BU948584 AW450839 BU621014 BP376333 AA281901 AA281724 AA445953 BQ923434 
    AB046858 BM719838 BU686662 BU679219 AL702961 AI969388 AA934791 AA363808 
    BQ181511 AL711455 AY029257 BQ950404 BU948827 BE046347 NM_025132 AA363807 

    highest scoring ESTs for WDR19:

    AA581393 AA007605 AA281724 AA464597 AA653325 AA858065 AA934791 AI355348 AI769134 AI969388 

    Unigene Cluster for WDR19:

    WD repeat domain 19
    Hs.438482  [show with all ESTs]
    Unigene Representative Sequence: NM_025132


    GeneLoc Exon Structure

    3 Ensembl transcripts including schematic representations:
    ENST00000399836  ENST00000288634  ENST00000399820  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    WDR19 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for WDR19

    1 / 2 / 3

    6 probe-sets matching WDR19 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    56146_at2, 3 U95-B 1 0.94 1.00 1.00 1.00 AA581393 1.00 1.00 1.00 1

    232163_at2, 3 U133-B 1 1.00 1.00 -- -- AI982884 0.60 1.00 0.82 1

    220917_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_025132 0.60 1.00 0.82 1

    232163_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    1555314_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    220917_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  WDR19 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TAACCTTGCT

    SOURCE GeneReport for Unigene cluster: Hs.438482

    UniProtKB/Swiss-Prot: WDR19_HUMAN, Q8NEZ3
    Tissue specificity: Some isoforms are tissue-specific. Highly expressed in the prostate. Lower
    expression in the cerebellum, pituitary gland, fetal lung, and pancreas. In normal prostate,
    expressed in both basal and luminal epithelial cells. No expression detected in fibromuscular
    stromal cells, endothelial cells, or infiltrating lymphocytes. Uniformed expression in prostate
    adenocarcinoma cells

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for WDR19 gene from 5/11 species (see all 11 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    WDR191   -- WD repeat domain 19 91.02(n)
    92.95(a)
    479113  XM_536260.2  XP_536260.2 
    chimpanzee
    (Pan troglodytes)
    WDR191   -- WD repeat domain 19 99.65(n)
    99.85(a)
    461172  XM_517152.2  XP_517152.2 
    cow
    (Bos taurus)
    WDR191   -- WD repeat domain 19 90.31(n)
    91.57(a)
    533633  XM_613099.3  XP_613099.3 
    rat
    (Rattus norvegicus)
    Wdr191   -- WD repeat domain 19 85.58(n)
    89.93(a)
    305349  XM_223412.3  XP_223412.3 
    mouse
    (Mus musculus)
    Wdr191, 5 55
    WD repeat domain 191, 5 85.83(n)1
    89.39(a)1
    2130811  NM_153391.11  NP_700440.11 
     AA3880625  AA8795505  (see all 22)
    About this table        Species with no ortholog for WDR19

    ENSEMBL Gene Tree for WDR19
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

      --
    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/588 NCBI SNPs in WDR19 are shown (see all 588 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 157)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 4 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs14518191,2
    A,C,F,H,O38860127(-) TGGGCC/TAAATA 1 -- ng518Minor allele frequency- T:0.17MN NA EU EA WA 744
    rs100300291,2
    A,C,F,H38963950(+) GTTTAC/TACAAA 1 -- ng315Minor allele frequency- T:0.01NS EU EA WA 576
    rs100302131,2
    A,C,F,H38964052(+) TTATAC/TCTATC 1 -- ng317Minor allele frequency- T:0.03NA EU EA WA 560
    rs14518201,2
    C,F,H,O38859842(-) TTGTAT/CAGTAT 1 -- ng5113Minor allele frequency- C:0.23MN EA NA EU WA 2464
    rs43671821,2
    A,C,F,H38860166(+) GTCTTT/CTTTCC 1 -- ng51 trp39Minor allele frequency- C:0.19NA EU EA WA 736
    rs169952091,2
    C,F,H38944144(+) ACGATG/AGCATG 1 S/G mis1 ese311Minor allele frequency- A:0.05NA EU EA WA 974
    --
    rs172888831,2
    C,F38964134(-) AACAA-/ACAA  
            
    TGTAT
    1 -- ng311Minor allele frequency- ACAA:0.01NS 170
    rs75641,2
    C,F38963717(+) TTACAC/TACTCT 1 -- ut317Minor allele frequency- T:0.40MN EA NA NS 1586
    --
    rs173356611,2
    F38963964(-) CTTAAT/CAGCTG 1 -- ng311Minor allele frequency- C:0.01NS 180
    --
    rs100279771,2
    C38964250(+) GGAGTA/CCATAC 1 -- ng310--------
    About this table

    HapMap Linkage Disequilibrium images for WDR19 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 608151

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    9 PubMed articles for WDR19 gene:
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 57728 HGNC: 18340 AceView: WDR19 Ensembl:ENSG00000157796 euGenes: HUgn57728
    ECgene: WDR19 H-InvDB: WDR19
    (According to HUGE)
    About This Section

    HUGE: KIAA1638
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for WDR19:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for WDR19 Browse small molecules at Sigma-Aldrich
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