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WDR12 Gene

protein-coding GIFtS: 51

GC02M203453

WD repeat domain 12
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
FLJ10881 ^¹, ²
FLJ12719 ^²
FLJ12720 ^²
YTM1 ^¹, ²

Descriptions
WD repeat domain 12 ^²
WD repeat domain 12 protein ^²
WD repeat-containing protein 12 ^³

External Ids
HGNC: 14098¹
Entrez Gene: 55759²
UniProtKB: Q9GZL7³
Ensembl: ENSG00000138442⁷

Search outside databases for aliases for WDR12 gene

Previous GC identifers: GC02M201962 GC02M202469 GC02M203709 GC02M203947 GC02M203570

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for WDR12:

This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved

regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which

may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are

involved in a variety of cellular processes, including cell cycle progression, signal

transduction, apoptosis, and gene regulation. This protein is highly similar to the mouse WD

repeat domain 12 protein at the amino acid level. The protein encoded by this gene is a component

of a nucleolar protein complex that affects maturation of the large ribosomal subunit.

UniProtKB/Swiss-Prot: WDR12_HUMAN, Q9GZL7

Function: Component of the PeBoW complex, which is required for maturation of 28S and 5.8S

ribosomal RNAs and formation of the 60S ribosome

Gene Wiki entry for WDR12

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the WDR12 gene

Entrez Gene cytogenetic band: 2q33.1 Ensembl cytogenetic band: 2q33.1 HGNC cytogenetic band: 2q33.1

WDR12 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure

GeneLoc location for GC02M203453: (about GC identifiers)

Start:	203,453,575 bp from pter
End:	203,485,194 bp from pter
Size:	31,620 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000002.10 NT_005403.16

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: WDR12_HUMAN, Q9GZL7 (See protein sequence)

Recommended Name: Ribosome biogenesis protein WDR12

Size: 423 amino acids; 47708 Da

Subunit: Component of the PeBoW complex, composed of BOP1, PES1 and WDR12. Within the PeBoW complex

BOP1 interacts directly with PES1 and WDR12. The PeBoW complex also associates with the 66S

pre-ribosome

Subcellular location: Nucleus, nucleolus. Nucleus, nucleoplasm

Secondary accessions: Q96HU0 Q9NV80 Q9NYI8

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_060726.3

ENSEMBL proteins:

ENSP00000261015

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
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	Browse Abnova for Human Recombinant Proteins

OriGene Purified Recombinant Human Protein: WDR12

1 Gene Ontology (GO) cellular component term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IEA	--

About this table

Antibodies for WDR12:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for WDR12
	Browse R&D Systems for Antibodies
	Search for antibodies at Abcam and the World's Antibody Gateway (free search engine of over 150 antibody companies)
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Search Novus for antibodies for WDR12

Assays for WDR12:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry Q9GZL7

ProtoNet protein and cluster: Q9GZL7

1 Blocks protein family: IPB012972 NLE

UniProtKB/Swiss-Prot: WDR12_HUMAN, Q9GZL7

Similarity: Belongs to the WD repeat WDR12/YTM1 family

Similarity: Contains 7 WD repeats

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (WDR12)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_018256

Applied Biosystems Silencer® siRNAs for WDR12

Sigma-Aldrich siRNA for WDR12

Sigma-Aldrich shRNA for WDR12

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for WDR12
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_018256
Myc/DDK tagged cDNA clone in CMV expression vector: NM_018256
untagged cDNA clones in CMV expression vector (see all 2): NM_018256

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_018256

UniProtKB/Swiss-Prot: WDR12_HUMAN, Q9GZL7

Function: Component of the PeBoW complex, which is required for maturation of 28S and 5.8S

ribosomal RNAs and formation of the 60S ribosome

Induction: By MYC

1 Gene Ontology (GO) molecular function term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005515	protein binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Gene Network Central^TM Interacting Genes and Proteins Network for WDR12

3 Interacting proteins for WDR12 (ENSP00000261015³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
PES1	ENSP00000334612³	STRING (score=.816)
NOTCH1	ENSP00000360765³	STRING (score=.775)
BOP1	ENSP00000304151³	STRING (score=.772)

About this table

1 Gene Ontology (GO) biological process term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007219	Notch signaling pathway	IEA	--

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for WDR12

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (WDR12)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_018256

Sigma-Aldrich siRNA for WDR12

Sigma-Aldrich shRNA for WDR12

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_018256

REFSEQ mRNAs for WDR12 gene:

NM_018256.3

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_018256

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_018256
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_018256
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_018256

Additional cDNA sequence:

AF242546.1 AK001743.1 AK022781.1 AK022782.1 AK056092.1 AK299489.1 BC008082.2 CR589963.1

CR613990.1 CR622430.1 EF011617.1

8 DOTS entries:

DT.311726 DT.100785265 DT.100646866 DT.121032090 DT.92434391 DT.95154121 DT.121032085 DT.97780315

24/164 AceView cDNA sequences (see all 164 ):

BU166535 AI246255 CB134663 AI382380 BM800612 AI278377 AA587202 AI696102

BU631214 BI858072 CK430326 CB132835 AI680131 BF170904 CR589963 AA807928

BX281691 AI952510 BU190274 AK056092 BG031765 BU633688 BP366830 BM827535

highest scoring ESTs for WDR12:

AA278788 AF242546 AI417099 AK001743 AK022781 AK022782 AK056092 AL555559 AU126619 AU133366

Unigene Cluster for WDR12:

WD repeat domain 12

Hs.73291 [show with all ESTs]

Unigene Representative Sequence: NM_018256

GeneLoc Exon Structure

4 Alternative Splicing Database (ASD) splice patterns (SP) for WDR12

ExUns:	1a	·	1b	^	2	^	3	^	4	^	5	^	6a	·	6b	^	7	^	8	^	9a	·	9b	^	10	^	11	^	12	^	13
SP1:															-
SP2:											-
SP3:
SP4:

About this scheme

ECgene alternative splicing isoforms for WDR12

1 Ensembl transcript including schematic representation:

ENST00000261015

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

WDR12 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for WDR12

¹ / ² / ³

3 probe-sets matching WDR12 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
62554_at²^{, 3}	U95-C	1	1.00	1.00	1.00	1.00	AI417099	0.80	1.00	0.91	1
218512_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_018256	0.60	1.00	0.82	1
218512_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks WDR12 for binary patterns associated with the probe-sets selected above

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: AAATTACATA

SOURCE GeneReport for Unigene cluster: Hs.73291

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for WDR12 gene from 5/18 species (see all 18 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	WDR12¹	--	WD repeat domain 12	93.66(n) 96.45(a)	478876 XM_536036.2 XP_536036.2
chimpanzee (Pan troglodytes)	WDR12¹	--	WD repeat domain 12	99.89(n) 99.68(a)	459888 XM_516040.2 XP_516040.2
cow (Bos taurus)	WDR12¹	--	WD repeat domain 12	92.28(n) 95.51(a)	528209 NM_001075907.1 NP_001069375.1
rat (Rattus norvegicus)	Wdr12¹	--	WD repeat domain 12	88.42(n) 92.91(a)	363237 NM_199410.1 NP_955442.1
mouse (Mus musculus)	Wdr12^{1, 5}	1⁵	WD repeat domain 12^{1, 5}	89.52(n)¹ 93.38(a)¹	57750¹ NM_021312.4¹ NP_067287.1¹ AA222946⁵ AA467053⁵ (see all 20)

About this table Species with no ortholog for WDR12

ENSEMBL Gene Tree for WDR12

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for WDR12 gene

NLE1² CIAO1²

Pseudogenes

3 related pseudogenes

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/111 NCBI SNPs in WDR12 are shown (see all 111 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 23)

AB	SNP ID	Valid	Chr 2 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs6722332^1,2	F,H	203453572(+)	`ATACCT/CTTAAA`	1	--	ut3¹		4		EU EA WA	392
	rs35212307^1,2	C,F	203474001(+)	`TGAGAT/CGTTCT`	1	V/I	mis¹		5		NA EU EA WA	498
	rs3933629^1,2	A,C,F,H	203474612(+)	`tttgaT/Ctaatg`	1	--	int¹		4		EU EA WA	418
	rs7582720^1,2	A,C,F,H	203461317(+)	`aatgaT/Cggact`	1	--	int¹		11		EU EA WA NA	980
	rs6725887^1,2	A,C,F,H	203454130(+)	`AGACAT/CAATAT`	1	--	int¹		11		EU EA WA NA	978
	rs6435169^1,2	A,C,F,H	203461261(+)	`tcagaG/Agatag`	1	--	int¹		7		EU EA WA NA	558
	rs17637266^1,2	C,F,H	203481149(+)	`CATTAG/AGTGAC`	1	--	int¹		7		NA EU EA WA	524
	rs10189499^1,2	C,F,H	203458294(+)	`gctctT/Ccctca`	1	--	int¹		4		EU EA WA	418
	rs7560547^1,2	A,F,H	203466161(+)	`GGTTAA/GGCAGC`	1	--	int¹		4		EU EA WA	418
--	rs7573466^1,2	A,C	203478274(+)	`atgccC/Tggcta`	1	--	int¹		0	--	--	--	--

About this table

HapMap Linkage Disequilibrium images for WDR12 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/14 PubMed articles for WDR12 gene (see all 14 ):

Interdependence of Pes1, Bop1, and WDR12 controls nucleolar localization and assembly of the PeBoW complex required for maturation of the 60S ribosomal subunit. (PubMed id 17353269)^{2, 3, 4} Rohrmoser M....Eick D. (2007)
Mammalian WDR12 is a novel member of the Pes1-Bop1 complex and is required for ribosome biogenesis and cell proliferation. (PubMed id 16043514)^{2, 3, 4} Holzel M....Eick D. (2005)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{3, 4} Ota T....Sugano S. (2004)
Functional proteomic analysis of human nucleolus. (PubMed id 12429849)^{3, 4} Scherl A.... Diaz J.-J. (2002)
Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants. (PubMed id 19198609)³ ....Altshuler D. (2009)
The BRCT domain of mammalian Pes1 is crucial for nucleolar localization and rRNA processing. (PubMed id 17189298)⁴ Hoelzel M.... Eick D. (2007)
CUL4-DDB1 ubiquitin ligase interacts with multiple WD40-repeat proteins and regulates histone methylation. (PubMed id 17041588)³ Higa L.A.... Zhang H. (2006)
Dominant-negative Pes1 mutants inhibit ribosomal RNA processing and cell proliferation via incorporation into the PeBoW-complex. (PubMed id 16738141)⁴ Grimm T....Eick D. (2006)
Nucleolar proteome dynamics. (PubMed id 15635413)³ Andersen J.S....Mann M. (2005)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 55759	HGNC: 14098	AceView: WDR12	Ensembl:ENSG00000138442	euGenes: HUgn55759
ECgene: WDR12	H-InvDB: WDR12

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for WDR12
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for WDR12:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for WDR12-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for WDR12		Antibodies for WDR12
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for WDR12		Browse small molecules at Sigma-Aldrich
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WDR12 Gene

protein-coding GIFtS: 51

Aliases &
Descriptions
for WDR12

Summaries
for WDR12

Genomic Location
for WDR12

Proteins
for WDR12

Protein Domains/
Families
for WDR12

Gene Function
for WDR12

Pathways & Interactions
for WDR12

Drugs & Compounds
for WDR12

Transcripts
for WDR12

Expression
for WDR12

Orthologs
for WDR12

Paralogs
for WDR12

SNPs/Variants
for WDR12

Disorders & Mutations
for WDR12

Medical News
for WDR12

Publications
for WDR12

Search for WDR12

Genome Databases showing WDR12

Other Databases showing WDR12

Specialized Databases showing WDR12

Licensable Technologies
for WDR12

Services
for WDR12

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

WDR12 Gene

protein-coding GIFtS: 51

Aliases & Descriptionsfor WDR12

Summariesfor WDR12

Genomic Locationfor WDR12

Proteinsfor WDR12

Protein Domains/Familiesfor WDR12

Gene Functionfor WDR12

Pathways & Interactionsfor WDR12

Drugs & Compoundsfor WDR12

Transcriptsfor WDR12

Expression for WDR12

Orthologsfor WDR12

Paralogsfor WDR12

SNPs/Variantsfor WDR12

Disorders & Mutationsfor WDR12

Medical Newsfor WDR12

Publicationsfor WDR12

Search for WDR12

Genome Databases showing WDR12

Other Databases showing WDR12

Specialized Databases showing WDR12

Licensable Technologiesfor WDR12

Servicesfor WDR12

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for WDR12

Summaries
for WDR12

Genomic Location
for WDR12

Proteins
for WDR12

Protein Domains/
Families
for WDR12

Gene Function
for WDR12

Pathways & Interactions
for WDR12

Drugs & Compounds
for WDR12

Transcripts
for WDR12

Expression
for WDR12

Orthologs
for WDR12

Paralogs
for WDR12

SNPs/Variants
for WDR12

Disorders & Mutations
for WDR12

Medical News
for WDR12

Publications
for WDR12

Licensable Technologies
for WDR12

Services
for WDR12