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Aliases for WDR11-AS1 Gene

Subcategory (RNA class) for WDR11-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for WDR11-AS1 Gene

  • WDR11 Antisense RNA 1 2 3 5
  • WDR11 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for WDR11-AS1 Gene

Previous GeneCards Identifiers for WDR11-AS1 Gene

  • GC10M122524

Summaries for WDR11-AS1 Gene

GeneCards Summary for WDR11-AS1 Gene

WDR11-AS1 (WDR11 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDR11-AS1 Gene

Genomics for WDR11-AS1 Gene

Regulatory Elements for WDR11-AS1 Gene

Enhancers for WDR11-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F120942 1 Ensembl ENCODE 5.9 -91.7 -91706 0.7 ELF3 CTCF PKNOX1 TEAD4 MAX ZNF48 ZNF2 RAD21 TEAD3 SCRT2 ENSG00000224250 WDR11-AS1 WDR11 GC10P120938 LOC105378518
GH10F120977 1.2 Ensembl ENCODE 4.6 -127.9 -127919 3.2 PKNOX1 FEZF1 ZNF2 GLIS2 KLF7 FOS ZNF263 SP3 TSHZ1 ZNF488 WDR11 WDR11-AS1 LOC105378519 LOC105378518
GH10F120981 0.7 ENCODE 4.6 -130.5 -130468 0.2 KLF17 ZIC2 ZNF843 HIC1 OSR2 ZBTB48 GLIS1 ZNF580 SP7 ZNF423 WDR11-AS1 LOC105378519 LOC105378520
GH10F120812 0.2 ENCODE 5.1 +38.0 37956 0.9 WDR11 WDR11-AS1 LOC105378516 LINC01561
GH10F120850 1.2 ENCODE 0.8 -0.4 -422 2.5 HDGF PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 WDR11 RPL21P16 SEC23IP WDR11-AS1 ENSG00000271670
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WDR11-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for WDR11-AS1 Gene

Chromosome:
10
Start:
120,761,812 bp from pter
End:
120,851,345 bp from pter
Size:
89,534 bases
Orientation:
Minus strand

Genomic View for WDR11-AS1 Gene

Genes around WDR11-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WDR11-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WDR11-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDR11-AS1 Gene

Proteins for WDR11-AS1 Gene

Post-translational modifications for WDR11-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WDR11-AS1 Gene

Domains & Families for WDR11-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WDR11-AS1 Gene

Function for WDR11-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WDR11-AS1 Gene

Localization for WDR11-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for WDR11-AS1 Gene

Pathways & Interactions for WDR11-AS1 Gene

SuperPathways for WDR11-AS1 Gene

No Data Available

Interacting Proteins for WDR11-AS1 Gene

Gene Ontology (GO) - Biological Process for WDR11-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WDR11-AS1 Gene

Transcripts for WDR11-AS1 Gene

mRNA/cDNA for WDR11-AS1 Gene

(3) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for WDR11-AS1 Gene

WDR11 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for WDR11-AS1 Gene

No ASD Table

Relevant External Links for WDR11-AS1 Gene

GeneLoc Exon Structure for
WDR11-AS1
ECgene alternative splicing isoforms for
WDR11-AS1

Expression for WDR11-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for WDR11-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for WDR11-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.9), Brain - Putamen (basal ganglia) (x4.1), and Brain - Nucleus accumbens (basal ganglia) (x4.1).

SOURCE GeneReport for Unigene cluster for WDR11-AS1 Gene:

Hs.568750
genes like me logo Genes that share expression patterns with WDR11-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for WDR11-AS1 Gene

Orthologs for WDR11-AS1 Gene

Evolution for WDR11-AS1 Gene

ENSEMBL:
Gene Tree for WDR11-AS1 (if available)
TreeFam:
Gene Tree for WDR11-AS1 (if available)

No data available for Orthologs for WDR11-AS1 Gene

Paralogs for WDR11-AS1 Gene

No data available for Paralogs for WDR11-AS1 Gene

Variants for WDR11-AS1 Gene

Sequence variations from dbSNP and Humsavar for WDR11-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1016508 -- 120,843,472(-) TGCAA(A/G)TTGAA intron-variant
rs1016509 -- 120,843,317(-) GGGGA(A/G)TCTGA intron-variant
rs10430636 -- 120,798,087(+) caagc(A/G)cgcac intron-variant
rs10430637 -- 120,798,522(+) ccatc(A/G)tctgg intron-variant
rs10430701 -- 120,795,714(+) tatta(C/G)gtttt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for WDR11-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv525609 CNV loss 19592680
nsv522409 CNV loss 19592680
nsv1137964 CNV deletion 24896259
esv3624740 CNV loss 21293372
esv3624738 CNV gain 21293372
esv3624737 CNV gain 21293372
esv2675762 CNV deletion 23128226
esv25404 CNV loss 19812545
esv1556377 CNV deletion 17803354

Relevant External Links for WDR11-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WDR11-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WDR11-AS1 Gene

Disorders for WDR11-AS1 Gene

Relevant External Links for WDR11-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WDR11-AS1

No disorders were found for WDR11-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WDR11-AS1 Gene

Publications for WDR11-AS1 Gene

  1. Genetic variation modifies risk for neurodegeneration based on biomarker status. (PMID: 25140149) Hohman T.J. … Thornton-Wells T.A. (Front Aging Neurosci 2014) 3 64
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for WDR11-AS1 Gene

Sources for WDR11-AS1 Gene

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