WDFY4 Gene
protein-coding GIFtS : 44
GCID: GC10 P049892
WDFY family member 4 (Previous name: chromosome 10 open reading frame 64 ) (Previous symbol: C10orf64 )
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Aliasesfor WDFY4 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases WDFY Family Member 4 1 2 Chromosome 10 Open Reading Frame 641 C10orf641 2 3 WD Repeat- And FYVE Domain-Containing Protein 42 KIAA16071 3 5 EC 3.5.1.188 Em:AC060234.31 EC 3.6.3.128 FLJ457481
Export aliases for WDFY4 gene to outside databases Previous GC identifers: GC10P049313 GC10U900444 GC10P049563 GC10P044158
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Summariesfor WDFY4 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor WDFY4 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000010.10 NC_018921.1 NT_030059.13 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the WDFY4 gene promoter: AML1a FOXD3 STAT3 Pax-4a FOXL1 C/EBPalpha Other transcription factors Search SABiosciences Chromatin IP Primers for WDFY4 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat WDFY4
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 10q11.23 Ensembl cytogenetic band: 10q11.22 HGNC cytogenetic band: 10q11.23 WDFY4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10P049892: view genomic region
(about GC identifiers )
Start:
49,892,921 bp from pter
End:
50,191,001 bp from pter
Size:
298,081 bases
Orientation:
plus strand
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Proteinsfor WDFY4 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: WDFY4_HUMAN, Q6ZS81 (See
protein sequence )Recommended Name: WD repeat- and FYVE domain-containing protein 4 Size : 3184 amino acids; 353610 Da
Subcellular location : Membrane; Multi-pass membrane protein (Potential)
Secondary accessions : B9ZVP2 Q86WZ4 Q8N4A3 Q8TEN7 Q96BE1 Q9H7H8 Q9HCG5Alternative splicing : 5 isoforms : Q6ZS81-1 Q6ZS81-2 Q6ZS81-3 Q6ZS81-4 Q6ZS81-5 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for WDFY4: NX_Q6ZS81 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q6ZS81 3 DME Specific Peptides for WDFY4 (Q6ZS81 ) WDFY4 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_065996.1 ENSEMBL proteins: ENSP00000354141 ENSP00000407881 ENSP00000309314 ENSP00000363276 ENSP00000265453 ENSP00000320563 ENSP00000403789 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0016021 integral to membrane
IEA --
WDFY4 for ontologies About GeneDecksing WDFY4 Antibody Products: Assay Products for WDFY4:
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Protein
Domains / Familiesfor WDFY4 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
WDFY4 for domains About GeneDecksing 5/8 InterPro domains/families (see all 8 ):
Graphical View of Domain Structure for InterPro Entry Q6ZS81 ProtoNet protein and cluster: Q6ZS81
UniProtKB/Swiss-Prot: WDFY4_HUMAN, Q6ZS81 Similarity : Contains 1 BEACH domainSimilarity : Contains 5 WD repeats
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Functionfor WDFY4 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Enzyme Numbers (IUBMB): EC 3.6.3.12 2 EC 3.5.1.18 2 Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for WDFY4 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for WDFY4 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: WDFY4 (NM_020945 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for WDFY4 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat WDFY4
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for WDFY4
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Pathways & Interactionsfor WDFY4 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for WDFY4
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Drugs & Compoundsfor WDFY4 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for WDFY4 Search CenterWatch for drugs/clinical trials and news about WDFY4
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Transcriptsfor WDFY4 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for WDFY4 gene: NM_020945.1 Unigene Cluster for WDFY4:
WDFY family member 4 Hs.287379 [show with all ESTs ] Unigene Representative Sequence: NM_020945 10 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000360890 (uc001jgy.3 ) ENST00000454161 ENST00000312002 ENST00000374161 (uc001jhb.1 )ENST00000265453 (uc009xob.3 uc010qgn.1 ) ENST00000465910 ENST00000497480 ENST00000490507 ENST00000325239 (uc001jha.4 ) ENST00000413659 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for WDFY4 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for WDFY4 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: WDFY4 (NM_020945 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for WDFY4 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat WDFY4
Additional cDNA sequence: AB046827.1 AK074085.1 AK074443.1 AK093607.1 AK127650.1 AK301736.1 AL833669.1 BC015694.2 BC032420.1 BC034937.1 BC047574.1
11 DOTS entries : DT.207837 DT.86853800
DT.100746825 DT.99928057 DT.91862719 DT.101958248 DT.97803385 DT.100865949 DT.121230791 DT.97814933 DT.40311322 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for WDFY4 (see all 12 ) About this scheme ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17a · 17b ^ 18 ^ 19 ^ 20 ^ 21a · 21b · 21c ^ SP1 :                                                     SP2 :                                                     SP3 :                         -                             SP4 :                                                     SP5 :   -                                                  
ExUns: 22a · 22b ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28 ^ 29 ^ 30 ^ 31 ^ 32 ^ 33 ^ 34 ^ 35 ^ 36a · 36b ^ 37 ^ 38 ^ 39 ^ 40 ^ 41 ^ 42 ^ 43 ^ 44 ^ 45 ^ SP1 :           -                           -           -       SP2 :                                     -           -       SP3 :                                                     SP4 :                                                     SP5 :                                                    
ExUns: 46a · 46b ^ 47 ^ 48 ^ 49a · 49b ^ 50 ^ 51 ^ 52 ^ 53 ^ 54a · 54b ^ 55 ^ 56 ^ 57 ^ 58 ^ 59 ^ 60a · 60b ^ 61 ^ 62 ^ 63 ^ 64a · 64b ^ 65 ^ 66a · SP1 :         -                           -                   SP2 :         -                           -                   SP3 :                                                     SP4 :                                                     SP5 :                                                    
ECgene alternative splicing isoforms for WDFY4
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Expression for WDFY4 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section WDFY4 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image WDFY4 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See WDFY4 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for WDFY4 SOURCE GeneReport for Unigene cluster: Hs.287379 SABiosciences Custom PCR Arrays for WDFY4 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for WDFY4Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat WDFY4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat WDFY4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat WDFY4 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for WDFY4
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Orthologsfor WDFY4 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for WDFY4 gene from 6/14 species (see all 14 ) About this table
ENSEMBL Gene Tree for WDFY4 (if available)TreeFam Gene Tree for WDFY4 (if available)
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Paralogsfor WDFY4 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for WDFY4 gene NSMAF 2 LYST 2 LRBA 2 NBEAL1 2 NBEA 2 WDFY3 2 NBEAL2 2 3 SIMAP similar genes for WDFY4 using alignment to 7 protein entries: WDFY4_HUMAN (see all proteins ):WDFY3 NBEA DKFZp686K03100
WDFY4 for paralogs About GeneDecksing
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Genomic Variantsfor WDFY4 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 10 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for WDFY4 (49892921 - 50142921 bp, first 250kb of WDFY4)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 11 variations for WDFY4 4 CNVs : 48562 6869 100941 48561 7 Indels : 42369 61019 60012 48560 44755 39748 24505 Human Gene Mutation Database (HGMD) : WDFY4 SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing WDFY4
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Disorders
/ Diseasesfor WDFY4 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
WDFY4 for disorders About GeneDecksing
OMIM gene information: 613316
OMIM disorders : --6 diseases for WDFY4 : About MalaCards chediak-higashi syndrome systemic lupus erythematosus lupus erythematosus alzheimer's disease atherosclerosis malaria Human Genome Epidemiology (HuGE) Navigator: WDFY4 (5 documents) Export disorders for WDFY4 gene to outside databases
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Publicationsfor WDFY4 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for WDFY4 gene, integrated from 9 sources (see all 18 ): (articles sorted by number of sources associating them with WDFY4) Utopia : connect your pdf to the dynamic world of online information
Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10997877) 1 , 2 , 3 Nagase T.... Ohara O. (2000) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Pharmacogenomic study of side-effects for antidepressa nt treatment options in STAR*D. (PubMed id 22041458) 1 Clark S.L....van den Oord E.J. (2012) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473) 1 Wagner S.A....Choudhary C. (2011) Genome-wide association study in Asian populations id entifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosu s. (PubMed id 20169177) 1 Yang W....Lau Y.L. (2010) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Genome-wide association study in a Chinese Han popula tion identifies nine new susceptibility loci for systemic lupus erythematosus. (PubMed id 19838193) 1 Han J.W....Zhang X.J. (2009) Molecular genetics of successful smoking cessation: convergent genome-wide association study results. (PubMed id 18519826) 1 Uhl G.R....Lerman C. (2008)
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External Searches for WDFY4 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing WDFY4 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing WDFY4 gene
(According to HUGE )
About This Section
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Specialized Databases showing WDFY4 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for WDFY4 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for WDFY4 gene: Search GeneIP for patents involving WDFY4 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor WDFY4 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for WDFY4 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for WDFY4 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for WDFY4 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for WDFY4 OriGene 3'-UTR Clone for WDFY4 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for WDFY4 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for WDFY4 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for WDFY4 OriGene Custom Protein Services for WDFY4 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat WDFY4 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing WDFY4 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat WDFY4 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat WDFY4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat WDFY4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat WDFY4
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WDFY4 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for WDFY4
Search ThermoFisher Antibodies for WDFY4
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat WDFY4
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Aliases for WDFY4
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Expression for WDFY4
Function for WDFY4
Genomic Views for WDFY4
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Products for WDFY4
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