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Aliases for WDFY3-AS2 Gene

Subcategory (RNA class) for WDFY3-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for WDFY3-AS2 Gene

  • WDFY3 Antisense RNA 2 2 3 5
  • WDFY3 Antisense RNA 2 (Non-Protein Coding) 2 3
  • Chromosome 4 Open Reading Frame 12 2
  • Non-Protein Coding RNA 247 2
  • NCRNA00247 3
  • C4orf12 3
  • FBI4 3

External Ids for WDFY3-AS2 Gene

Previous HGNC Symbols for WDFY3-AS2 Gene

  • C4orf12
  • NCRNA00247

Previous GeneCards Identifiers for WDFY3-AS2 Gene

  • GC04P085889
  • GC04P085894

Summaries for WDFY3-AS2 Gene

GeneCards Summary for WDFY3-AS2 Gene

WDFY3-AS2 (WDFY3 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for WDFY3-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDFY3-AS2 Gene

Genomics for WDFY3-AS2 Gene

Regulatory Elements for WDFY3-AS2 Gene

Enhancers for WDFY3-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H084937 0.8 Ensembl ENCODE 24.6 -27.1 -27092 3.1 JUND POLR2A JUN HNF4A WDFY3-AS2 WDFY3 WDFY3-AS1 RNU6-469P
GH04H085827 1.2 ENCODE dbSUPER 11.6 +862.9 862949 2.8 PKNOX1 ZNF493 FEZF1 GLI4 YY1 REST ZNF662 ZNF623 GLIS1 WT1 MAPK10 WDFY3-AS2 ARHGAP24 GC04P085763 GC04M086014
GH04H084965 1.1 ENCODE 10.7 +0.8 829 2.9 PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 GLIS2 SP3 SP5 YY2 WDFY3-AS2 WDFY3 GC04P085101
GH04H084680 1 Ensembl ENCODE 10 -283.0 -283022 3.7 ELF3 SOX5 SOX13 STAT1 FOXA2 HLF RARA MEF2D CTBP1 ZGPAT WDFY3-AS1 CDS1 WDFY3-AS2 RN7SL552P PIR31866
GH04H084951 0.8 ENCODE 10.3 -13.3 -13309 2.4 FOXA2 SAP130 SIN3A MAX CEBPG ZNF644 YY1 GATA3 FOSL2 FOS WDFY3-AS2 RNU6-469P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WDFY3-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for WDFY3-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000170201 718 2801 PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 SP3 SP5 MXD4 REST

Genomic Locations for WDFY3-AS2 Gene

Genomic Locations for WDFY3-AS2 Gene
chr4:84,965,682-85,011,277
(GRCh38/hg38)
Size:
45,596 bases
Orientation:
Plus strand
chr4:85,887,538-85,932,430
(GRCh37/hg19)

Genomic View for WDFY3-AS2 Gene

Genes around WDFY3-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WDFY3-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WDFY3-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WDFY3-AS2 Gene

Proteins for WDFY3-AS2 Gene

Post-translational modifications for WDFY3-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WDFY3-AS2 Gene

Domains & Families for WDFY3-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WDFY3-AS2 Gene

Function for WDFY3-AS2 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WDFY3-AS2 Gene

Localization for WDFY3-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WDFY3-AS2 Gene

Pathways & Interactions for WDFY3-AS2 Gene

SuperPathways for WDFY3-AS2 Gene

No Data Available

Interacting Proteins for WDFY3-AS2 Gene

Gene Ontology (GO) - Biological Process for WDFY3-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WDFY3-AS2 Gene

Drugs & Compounds for WDFY3-AS2 Gene

No Compound Related Data Available

Transcripts for WDFY3-AS2 Gene

mRNA/cDNA for WDFY3-AS2 Gene

Unigene Clusters for WDFY3-AS2 Gene

WDFY3 antisense RNA 2:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for WDFY3-AS2 Gene

No ASD Table

Relevant External Links for WDFY3-AS2 Gene

GeneLoc Exon Structure for
WDFY3-AS2
ECgene alternative splicing isoforms for
WDFY3-AS2

Expression for WDFY3-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WDFY3-AS2 Gene

SOURCE GeneReport for Unigene cluster for WDFY3-AS2 Gene:

Hs.720920
genes like me logo Genes that share expression patterns with WDFY3-AS2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WDFY3-AS2 Gene

Orthologs for WDFY3-AS2 Gene

Evolution for WDFY3-AS2 Gene

ENSEMBL:
Gene Tree for WDFY3-AS2 (if available)
TreeFam:
Gene Tree for WDFY3-AS2 (if available)

No data available for Orthologs for WDFY3-AS2 Gene

Paralogs for WDFY3-AS2 Gene

No data available for Paralogs for WDFY3-AS2 Gene

Variants for WDFY3-AS2 Gene

Sequence variations from dbSNP and Humsavar for WDFY3-AS2 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000029415 -- 84,987,479(+) CCACC(A/C)TAATA intron-variant
rs1000081385 -- 85,001,917(+) CAAAA(A/G)GTAGC intron-variant
rs1000142830 -- 84,988,190(+) AGGAC(A/C)TCCAC intron-variant
rs1000255219 -- 84,980,567(+) GGAGA(C/T)GGAGG intron-variant
rs1000264921 -- 84,982,278(+) TGGCC(A/G)TTTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for WDFY3-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv519588 CNV gain 19592680

Relevant External Links for WDFY3-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WDFY3-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WDFY3-AS2 Gene

Disorders for WDFY3-AS2 Gene

Relevant External Links for WDFY3-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WDFY3-AS2

No disorders were found for WDFY3-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WDFY3-AS2 Gene

Publications for WDFY3-AS2 Gene

  1. Breakpoint analysis of the pericentric inversion distinguishing human chromosome 4 from the homologous chromosome in the chimpanzee (Pan troglodytes). (PMID: 15580561) Kehrer-Sawatzki H … Hameister H (Human mutation 2005) 2 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  4. NotI flanking sequences: a tool for gene discovery and verification of the human genome. (PMID: 12136098) Kutsenko AS … Zabarovsky ER (Nucleic acids research 2002) 3 60
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for WDFY3-AS2 Gene

Sources for WDFY3-AS2 Gene

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