Aliases for WDFY1 Gene
Aliases for WDFY1 Gene
External Ids for WDFY1 Gene
- HGNC: 20451
- Entrez Gene: 57590
- Ensembl: ENSG00000085449
- UniProtKB: Q8IWB7
Previous GeneCards Identifiers for WDFY1 Gene
- GC02M223461
- GC02M224704
- GC02M224942
- GC02M224565
- GC02M224448
- GC02M216592
Summaries for WDFY1 Gene
-
The protein encoded by this gene is a phosphatidylinositol 3-phosphate binding protein, which contains a FYVE zinc finger domain and multiple WD-40 repeat domains. When exogenously expressed, it localizes to early endosomes. Mutagenesis analysis demonstrates that this endosomal localization is mediated by the FYVE domain. [provided by RefSeq, Jan 2015]
GeneCards Summary for WDFY1 Gene
WDFY1 (WD Repeat And FYVE Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include 1-phosphatidylinositol binding. An important paralog of this gene is WDFY2.
UniProtKB/Swiss-Prot for WDFY1 Gene
-
Positively regulates TLR3- and TLR4-mediated signaling pathways by bridging the interaction between TLR3 or TLR4 and TICAM1. Promotes TLR3/4 ligand-induced activation of transcription factors IRF3 and NF-kappa-B, as well as the production of IFN-beta and inflammatory cytokines (PubMed:25736436).
No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDFY1 Gene
Genomics for WDFY1 Gene
Regulatory Elements for WDFY1 Gene
Enhancers for WDFY1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH02G223893 | 1.8 | FANTOM5 Ensembl ENCODE dbSUPER | 22 | +49.4 | 49420 | 4.8 | TBL1XR1 BMI1 EGR1 ZNF366 CBX5 SCRT2 FOS RELB ETV6 IKZF2 | WDFY1 MRPL44 GC02P223865 |
| GH02G223886 | 1.5 | FANTOM5 Ensembl ENCODE dbSUPER | 24.3 | +58.2 | 58187 | 0.8 | HDGF TFE3 MTA2 EED IKZF1 RELB IKZF2 | WDFY1 AP1S3 MRPL44 GC02P223865 |
| GH02G223908 | 1.6 | FANTOM5 ENCODE dbSUPER | 15.8 | +36.7 | 36667 | 1.1 | FOXA2 ATF1 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 TCF12 SLC30A9 | WDFY1 GC02P223865 |
| GH02G223796 | 1.8 | FANTOM5 Ensembl ENCODE dbSUPER | 10.4 | +145.8 | 145756 | 6.9 | PKNOX1 ZSCAN4 BMI1 RAD21 YY1 SLC30A9 CBX5 ZNF207 ZNF143 FOS | AP1S3 WDFY1 MRPL44 PIR50030 |
| GH02G223939 | 1.6 | FANTOM5 Ensembl ENCODE dbSUPER | 8.1 | +5.8 | 5783 | 0.4 | BHLHE40 EBF1 ZNF644 EP300 RELA CHAMP1 IKZF1 TARDBP NBN ZNF143 | WDFY1 GC02P223865 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around WDFY1 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the WDFY1 gene promoter:
Regulatory Element Products
Genomic Location for WDFY1 Gene
- Chromosome:
- 2
- Start:
- 223,855,716 bp from pter
- End:
- 223,945,387 bp from pter
- Size:
- 89,672 bases
- Orientation:
- Minus strand
Genomic View for WDFY1 Gene
Genes around WDFY1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 2q36.1 by Ensembl
- 2q36.1 by Entrez Gene
- 2q36.1 by HGNC
WDFY1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for WDFY1 Gene
Proteins for WDFY1 Gene
-
Protein details for WDFY1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q8IWB7-WDFY1_HUMAN
- Recommended name:
- WD repeat and FYVE domain-containing protein 1
- Protein Accession:
- Q8IWB7
- Q53S17
- Q9H9D5
- Q9P2B3
Protein attributes for WDFY1 Gene
- Size:
- 410 amino acids
- Molecular mass:
- 46324 Da
- Quaternary structure:
-
- Binds PtdIns3P in vitro with high specificity over other phosphoinositides. Interacts (via WD repeat 2) with tyrosine-phosphorylated TLR3 (via TIR domain) in response to poly(I:C) (PubMed:25736436). Interacts with TICAM1 in response to poly(I:C) (By similarity). Interacts with TLR4 in response to LPS (By similarity).
- SequenceCaution:
-
- Sequence=BAA92673.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};
Protein Expression for WDFY1 Gene
Post-translational modifications for WDFY1 Gene
Other Protein References for WDFY1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
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Abcam antibodies for WDFY1
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- antibodies-online Antibodies for WDFY1: See all 36
- GeneTex WDFY1 antibody for WDFY1
Protein Products
-
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- antibodies-online Proteins for WDFY1: See all 5
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- Search GeneTex for Proteins for WDFY1
-
Abcam proteins for WDFY1
No data available for DME Specific Peptides for WDFY1 Gene
Domains & Families for WDFY1 Gene
Gene Families for WDFY1 Gene
Protein Domains for WDFY1 Gene
Suggested Antigen Peptide Sequences for WDFY1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q8IWB7UniProtKB/Swiss-Prot:
WDFY1_HUMAN :- The FYVE-type zinc finger domain mediates interactions with phosphatidylinositol 3-phosphate in membranes of early endosomes and penetrates bilayers. The FYVE domain insertion into PtdIns(3)P-enriched membranes is substantially increased in acidic conditions. The FYVE domain is required for its function in regulating TLR3 signaling (PubMed:25736436).
- Domain:
-
- The FYVE-type zinc finger domain mediates interactions with phosphatidylinositol 3-phosphate in membranes of early endosomes and penetrates bilayers. The FYVE domain insertion into PtdIns(3)P-enriched membranes is substantially increased in acidic conditions. The FYVE domain is required for its function in regulating TLR3 signaling (PubMed:25736436).
Function for WDFY1 Gene
Molecular function for WDFY1 Gene
- UniProtKB/Swiss-Prot Function:
- Positively regulates TLR3- and TLR4-mediated signaling pathways by bridging the interaction between TLR3 or TLR4 and TICAM1. Promotes TLR3/4 ligand-induced activation of transcription factors IRF3 and NF-kappa-B, as well as the production of IFN-beta and inflammatory cytokines (PubMed:25736436).
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005515 | protein binding | IPI | 25736436 |
| GO:0005545 | 1-phosphatidylinositol binding | IDA | 11739631 |
| GO:0008270 | zinc ion binding | NAS | 11739631 |
| GO:0046872 | metal ion binding | IEA | -- |
Phenotypes for WDFY1 Gene
Animal Model Products
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-
-
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CRISPR Products
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miRNA for WDFY1 Gene
- miRTarBase miRNAs that target WDFY1
miRNA Products
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Inhibitory RNA Products
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-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for WDFY1
-
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-
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-
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No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for WDFY1 Gene
Localization for WDFY1 Gene
Subcellular locations from UniProtKB/Swiss-Prot for WDFY1 Gene
- Early endosome.
| Compartment | Confidence |
|---|---|
| nucleus | 5 |
| cytosol | 5 |
| endosome | 5 |
| extracellular | 1 |
| peroxisome | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005634 | nucleus | IDA | 11739631 |
| GO:0005768 | endosome | IEA | -- |
| GO:0005769 | early endosome | IDA | 11739631 |
| GO:0005829 | cytosol | IDA | 11739631 |
Pathways & Interactions for WDFY1 Gene
No Data Available
Interacting Proteins for WDFY1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0008150 | biological_process | ND | -- |
| GO:0034141 | positive regulation of toll-like receptor 3 signaling pathway | IMP | 25736436 |
| GO:0034145 | positive regulation of toll-like receptor 4 signaling pathway | IMP | 25736436 |
No data available for Pathways by source and SIGNOR curated interactions for WDFY1 Gene
Transcripts for WDFY1 Gene
mRNA/cDNA for WDFY1 Gene
- (1) REFSEQ mRNAs :
- (7) Additional mRNA sequences :
- (276) Selected AceView cDNA sequences:
- (6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for WDFY1 Gene
CRISPR Products
-
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-
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-
Santa Cruz Biotechnology (SCBT) CRISPR for WDFY1
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miRNA Products
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Inhibitory RNA Products
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Clone Products
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- VectorBuilder custom plasmid, inducible vectors for WDFY1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for WDFY1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6a | · | 6b | ^ | 7 | ^ | 8a | · | 8b | · | 8c | ^ | 9a | · | 9b | ^ | 10 | ^ | 11 | ^ | 12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | ||||||||||||||||||||||||||||||||||
| SP2: | - | - | - | - | - | ||||||||||||||||||||||||||||||||
| SP3: | |||||||||||||||||||||||||||||||||||||
| SP4: | - | ||||||||||||||||||||||||||||||||||||
| SP5: |
Expression for WDFY1 Gene
This gene is overexpressed in Urinary Bladder (8.6).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for WDFY1 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of WDFY1 Gene:
WDFY1SOURCE GeneReport for Unigene cluster for WDFY1 Gene:
Hs.368359Evidence on tissue expression from TISSUES for WDFY1 Gene
- Nervous system(4.6)
- Skin(4.5)
Primer Products
-
OriGene qPCR primer pairs for WDFY1
-
OriGene qPCR primer pairs and template standards for WDFY1
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for WDFY1 Gene
Orthologs for WDFY1 Gene
This gene was present in the common ancestor of animals and fungi.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | WDFY1 34 35 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | WDFY1 35 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | WDFY1 35 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | WDFY1 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | WDFY1 34 35 |
|
||
| mouse (Mus musculus) |
Mammalia | Wdfy1 34 16 35 |
|
||
| chicken (Gallus gallus) |
Aves | WDFY1 34 35 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | WDFY1 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | wdfy1 34 |
|
||
| Str.11442 34 |
|
||||
| zebrafish (Danio rerio) |
Actinopterygii | wdfy1 34 35 |
|
||
| Dr.3787 34 |
|
||||
| fruit fly (Drosophila melanogaster) |
Insecta | CG5168 35 |
|
OneToMany | |
| worm (Caenorhabditis elegans) |
Secernentea | wdfy-2 35 |
|
OneToMany | |
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | VPS27 35 |
|
OneToMany | |
| sea squirt (Ciona savignyi) |
Ascidiacea | CSA.4999 35 |
|
OneToMany |
- Species where no ortholog for WDFY1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for WDFY1 Gene
(1) SIMAP similar genes for WDFY1 Gene using alignment to 3 proteins:
Variants for WDFY1 Gene
| SNP ID | Clin | Chr 02 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000000459 | -- | 223,882,296(+) | TTTTA(G/T)TAGAG | intron-variant | |
| rs1000028110 | -- | 223,889,278(+) | TCTAG(C/G)AGTCA | intron-variant | |
| rs1000033398 | -- | 223,882,603(+) | ATTCA(C/T)ATTAT | intron-variant | |
| rs1000045704 | -- | 223,929,221(+) | TTGCT(C/T)TTTAT | intron-variant | |
| rs1000070986 | -- | 223,908,575(+) | CCTCT(A/G)GCTTT | intron-variant |
Residual Variation Intolerance Score:
32.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
1.03;
21.18% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for WDFY1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- WDFY1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for WDFY1 Gene
Disorders for WDFY1 Gene
Relevant External Links for WDFY1
No disorders were found for WDFY1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WDFY1 Gene
Publications for WDFY1 Gene
- FENS-1 and DFCP1 are FYVE domain-containing proteins with distinct functions in the endosomal and Golgi compartments. (PMID: 11739631) Ridley S.H. … Hawkins P.T. (J. Cell Sci. 2001) 2 3 4 64
- WDFY1 mediates TLR3/4 signaling by recruiting TRIF. (PMID: 25736436) Hu Y.H. … Liu Y. (EMBO Rep. 2015) 3 4 64
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
- Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10718198) Nagase T. … Ohara O. (DNA Res. 2000) 3 4 64
Products for WDFY1 Gene
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- Invitrogen Antibodies for WDFY1
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- antibodies-online Antibodies for WDFY1: See all 36
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- antibodies-online Proteins for WDFY1: See all 5
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- GeneTex WDFY1 antibody for WDFY1
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- ViGene Biosciences adenoviral particle packaged cDNA for WDFY1 gene
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- Horizon Cell Lines for WDFY1
- Cyagen custom Knockout/knockin (KOKI) mouse models for WDFY1
- VectorBuilder custom plasmid, inducible vectors for WDFY1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for WDFY1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for WDFY1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus Biologicals
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
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