Aliases for WDFY1 Gene
Aliases for WDFY1 Gene
External Ids for WDFY1 Gene
- HGNC: 20451
- Entrez Gene: 57590
- Ensembl: ENSG00000085449
- UniProtKB: Q8IWB7
Previous GeneCards Identifiers for WDFY1 Gene
- GC02M223461
- GC02M224704
- GC02M224942
- GC02M224565
- GC02M224448
- GC02M216592
Summaries for WDFY1 Gene
-
The protein encoded by this gene is a phosphatidylinositol 3-phosphate binding protein, which contains a FYVE zinc finger domain and multiple WD-40 repeat domains. When exogenously expressed, it localizes to early endosomes. Mutagenesis analysis demonstrates that this endosomal localization is mediated by the FYVE domain. [provided by RefSeq, Jan 2015]
GeneCards Summary for WDFY1 Gene
WDFY1 (WD Repeat And FYVE Domain Containing 1) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include 1-phosphatidylinositol binding. An important paralog of this gene is WDFY2.
UniProtKB/Swiss-Prot for WDFY1 Gene
-
Positively regulates TLR3- and TLR4-mediated signaling pathways by bridging the interaction between TLR3 or TLR4 and TICAM1. Promotes TLR3/4 ligand-induced activation of transcription factors IRF3 and NF-kappa-B, as well as the production of IFN-beta and inflammatory cytokines (PubMed:25736436).
No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WDFY1 Gene
Genomics for WDFY1 Gene
GeneHancer (GH) Regulatory Elements for WDFY1 Gene
Promoters and enhancers for WDFY1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around WDFY1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for WDFY1 Gene
Genomic Locations for WDFY1 Gene
- chr2:223,855,716-223,945,387
- (GRCh38/hg38)
- Size:
- 89,672 bases
- Orientation:
- Minus strand
- chr2:224,720,433-224,810,104
- (GRCh37/hg19)
Genomic View for WDFY1 Gene
Genes around WDFY1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 2q36.1 by Ensembl
- 2q36.1 by Entrez Gene
- 2q36.1 by HGNC
WDFY1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for WDFY1 Gene
Proteins for WDFY1 Gene
-
Protein details for WDFY1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q8IWB7-WDFY1_HUMAN
- Recommended name:
- WD repeat and FYVE domain-containing protein 1
- Protein Accession:
- Q8IWB7
- Q53S17
- Q9H9D5
- Q9P2B3
Protein attributes for WDFY1 Gene
- Size:
- 410 amino acids
- Molecular mass:
- 46324 Da
- Quaternary structure:
-
- Binds PtdIns3P in vitro with high specificity over other phosphoinositides. Interacts (via WD repeat 2) with tyrosine-phosphorylated TLR3 (via TIR domain) in response to poly(I:C) (PubMed:25736436). Interacts with TICAM1 in response to poly(I:C) (By similarity). Interacts with TLR4 in response to LPS (By similarity).
- SequenceCaution:
-
- Sequence=BAA92673.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};
Protein Expression for WDFY1 Gene
Post-translational modifications for WDFY1 Gene
No Post-translational modifications
Other Protein References for WDFY1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
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-
Abcam antibodies for WDFY1
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Protein Products
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-
Quality Products:
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-
Abcam proteins for WDFY1
Assay Products
No data available for DME Specific Peptides for WDFY1 Gene
Domains & Families for WDFY1 Gene
Gene Families for WDFY1 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Protein Domains for WDFY1 Gene
Suggested Antigen Peptide Sequences for WDFY1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q8IWB7UniProtKB/Swiss-Prot:
WDFY1_HUMAN :- The FYVE-type zinc finger domain mediates interactions with phosphatidylinositol 3-phosphate in membranes of early endosomes and penetrates bilayers. The FYVE domain insertion into PtdIns(3)P-enriched membranes is substantially increased in acidic conditions. The FYVE domain is required for its function in regulating TLR3 signaling (PubMed:25736436).
- Domain:
-
- The FYVE-type zinc finger domain mediates interactions with phosphatidylinositol 3-phosphate in membranes of early endosomes and penetrates bilayers. The FYVE domain insertion into PtdIns(3)P-enriched membranes is substantially increased in acidic conditions. The FYVE domain is required for its function in regulating TLR3 signaling (PubMed:25736436).
Function for WDFY1 Gene
Molecular function for WDFY1 Gene
- UniProtKB/Swiss-Prot Function:
- Positively regulates TLR3- and TLR4-mediated signaling pathways by bridging the interaction between TLR3 or TLR4 and TICAM1. Promotes TLR3/4 ligand-induced activation of transcription factors IRF3 and NF-kappa-B, as well as the production of IFN-beta and inflammatory cytokines (PubMed:25736436).
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005515 | protein binding | IPI | 25736436 |
| GO:0005545 | 1-phosphatidylinositol binding | IDA | 11739631 |
| GO:0008270 | zinc ion binding | NAS | 11739631 |
| GO:0046872 | metal ion binding | IEA | -- |
Phenotypes for WDFY1 Gene
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miRNA for WDFY1 Gene
- miRTarBase miRNAs that target WDFY1
-
- hsa-mir-1-3p (MIRT001322)
- hsa-mir-155-5p (MIRT001486)
- hsa-mir-1301-3p (MIRT036051)
- hsa-mir-3911 (MIRT711943)
- hsa-mir-4800-5p (MIRT711944)
- hsa-mir-3138 (MIRT711945)
- hsa-mir-27a-3p (MIRT726110)
- hsa-mir-27b-3p (MIRT726111)
- hsa-mir-2115-5p (MIRT763814)
- hsa-mir-2355-5p (MIRT764001)
- hsa-mir-3613-3p (MIRT766008)
- hsa-mir-3977 (MIRT767914)
- hsa-mir-516a-3p (MIRT773455)
- hsa-mir-516b-3p (MIRT773460)
- hsa-mir-5195-5p (MIRT773632)
- hsa-mir-7162-5p (MIRT781696)
miRNA Products
- Search ViGene Biosciences for WDFY1
Inhibitory RNA Products
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Clone Products
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-
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for WDFY1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
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No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for WDFY1 Gene
Localization for WDFY1 Gene
Subcellular locations from UniProtKB/Swiss-Prot for WDFY1 Gene
- Early endosome.
| Compartment | Confidence |
|---|---|
| nucleus | 5 |
| cytosol | 5 |
| endosome | 5 |
| extracellular | 1 |
| peroxisome | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005634 | nucleus | IDA | 11739631 |
| GO:0005768 | endosome | IEA | -- |
| GO:0005769 | early endosome | IEA,IDA | 11739631 |
| GO:0005829 | cytosol | IDA | 11739631 |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for WDFY1 Gene
Pathways & Interactions for WDFY1 Gene
No Data Available
Interacting Proteins for WDFY1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0034141 | positive regulation of toll-like receptor 3 signaling pathway | IEA,IMP | 25736436 |
| GO:0034145 | positive regulation of toll-like receptor 4 signaling pathway | IEA,IMP | 25736436 |
No data available for Pathways by source and SIGNOR curated interactions for WDFY1 Gene
Transcripts for WDFY1 Gene
mRNA/cDNA for WDFY1 Gene
- (1) REFSEQ mRNAs :
- (7) Additional mRNA sequences :
- (276) Selected AceView cDNA sequences:
- (6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for WDFY1 Gene
CRISPR Products
-
OriGene CRISPR knockouts for WDFY1
- genomics-online: gRNA clones - Search results for 116 available WDFY1 gene related products
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-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for WDFY1
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miRNA Products
- Search ViGene Biosciences for WDFY1
Inhibitory RNA Products
- Origene RNAi, sirna, and shrna products in human, mouse, rat for WDFY1
- Browse OriGene Inhibitory RNA Products For WDFY1
- genomics-online: shRNA clones - Search results for 116 available WDFY1 gene related products
- Overview of 116 available WDFY1 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for WDFY1 gene
Clone Products
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-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for WDFY1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6a | · | 6b | ^ | 7 | ^ | 8a | · | 8b | · | 8c | ^ | 9a | · | 9b | ^ | 10 | ^ | 11 | ^ | 12 |
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| SP1: | - | - | - | ||||||||||||||||||||||||||||||||||
| SP2: | - | - | - | - | - | ||||||||||||||||||||||||||||||||
| SP3: | |||||||||||||||||||||||||||||||||||||
| SP4: | - | ||||||||||||||||||||||||||||||||||||
| SP5: |
Expression for WDFY1 Gene
This gene is overexpressed in Urinary Bladder (8.6).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for WDFY1 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of WDFY1 Gene:
WDFY1SOURCE GeneReport for Unigene cluster for WDFY1 Gene:
Hs.368359Evidence on tissue expression from TISSUES for WDFY1 Gene
- Nervous system(4.6)
- Skin(4.5)
Primer Products
-
OriGene qPCR primer pairs for WDFY1
-
OriGene qPCR primer pairs and template standards for WDFY1
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for WDFY1 Gene
Orthologs for WDFY1 Gene
This gene was present in the common ancestor of animals and fungi.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | WDFY1 33 34 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | WDFY1 34 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | WDFY1 34 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | WDFY1 33 34 |
|
||
| dog (Canis familiaris) |
Mammalia | WDFY1 33 34 |
|
||
| mouse (Mus musculus) |
Mammalia | Wdfy1 33 16 34 |
|
||
| chicken (Gallus gallus) |
Aves | WDFY1 33 34 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | WDFY1 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | wdfy1 33 |
|
||
| Str.11442 33 |
|
||||
| zebrafish (Danio rerio) |
Actinopterygii | wdfy1 33 34 |
|
||
| Dr.3787 33 |
|
||||
| fruit fly (Drosophila melanogaster) |
Insecta | CG5168 34 |
|
OneToMany | |
| worm (Caenorhabditis elegans) |
Secernentea | wdfy-2 34 |
|
OneToMany | |
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | VPS27 34 |
|
OneToMany | |
| sea squirt (Ciona savignyi) |
Ascidiacea | CSA.4999 34 |
|
OneToMany |
- Species where no ortholog for WDFY1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for WDFY1 Gene
(1) SIMAP similar genes for WDFY1 Gene using alignment to 3 proteins:
Variants for WDFY1 Gene
| SNP ID | Clin | Chr 02 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000000459 | -- | 223,882,296(-) | G/T | intron_variant | |
| rs1000028110 | -- | 223,889,278(-) | G/C | intron_variant | |
| rs1000033398 | -- | 223,882,603(-) | T/C | intron_variant | |
| rs1000045704 | -- | 223,929,221(-) | C/T | intron_variant | |
| rs1000070986 | -- | 223,908,575(-) | G/A | intron_variant |
Residual Variation Intolerance Score:
32.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
1.03;
21.18% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for WDFY1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- WDFY1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for WDFY1 Gene
Disorders for WDFY1 Gene
Additional Disease Information for WDFY1
- Genetic Association Database
- (GAD)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No disorders were found for WDFY1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WDFY1 Gene
Publications for WDFY1 Gene
- FENS-1 and DFCP1 are FYVE domain-containing proteins with distinct functions in the endosomal and Golgi compartments. (PMID: 11739631) Ridley SH … Hawkins PT (Journal of cell science 2001) 2 3 4 58
- WDFY1 mediates TLR3/4 signaling by recruiting TRIF. (PMID: 25736436) Hu YH … Liu Y (EMBO reports 2015) 3 4 58
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
- Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10718198) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2000) 3 4 58
Products for WDFY1 Gene
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- VectorBuilder custom plasmid, inducible vectors for WDFY1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for WDFY1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for 40 available WDFY1 Antibodies ranked by validation data
- Compare Top WDFY1 Antibodies
- antibodies-online: Search results for available WDFY1 related products ranked by validation data
- antibodies-online: Search results for 4 available WDFY1 Proteins ranked by validation data
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- Overview of 116 available WDFY1 gene related products
Sources for WDFY1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
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