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WBP2NL Gene

protein-coding   GIFtS: 40
GCID: GC22P042394

WBP2 N-Terminal Like

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
WBP2 N-Terminal Like1 2
PAWP2 3 5
Postacrosomal Sheath WW Domain-Binding Protein1 2
WW Domain-Binding Protein 2-Like2 3

External Ids:    HGNC: 283891   Entrez Gene: 1646842   Ensembl: ENSG000001830667   OMIM: 6109815   UniProtKB: Q6ICG83   

Export aliases for WBP2NL gene to outside databases

Previous GC identifers: GC22P040724 GC22P025360


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for WBP2NL Gene:
WBP2NL is a sperm-specific WW domain-binding protein that promotes meiotic resumption and pronuclear development
during oocyte fertilization (Wu et al., 2007 (PubMed 17289678)).(supplied by OMIM, Mar 2008)

GeneCards Summary for WBP2NL Gene:
WBP2NL (WBP2 N-terminal like) is a protein-coding gene. Diseases associated with WBP2NL include mitral valve stenosis, and pulmonary edema. GO annotations related to this gene include WW domain binding. An important paralog of this gene is WBP2.

UniProtKB/Swiss-Prot: WBP2L_HUMAN, Q6ICG8
Function: May play a role in meotic resumption and pronuclear formation, mediated by a WW domain-signaling pathway
during fertilization (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000022.11  NT_011520.13  NC_018933.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the WBP2NL gene promoter:
         SRF   RFX1   FOXF2   POU3F1   SRF (504 AA)   Olf-1   Meis-1b   PPAR-alpha   Meis-1a   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidWBP2NL promoter sequence
   Search Chromatin IP Primers for WBP2NL

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat WBP2NL


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q13.2   Ensembl cytogenetic band:  22q13.2   HGNC cytogenetic band: 22q13.2

WBP2NL Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
WBP2NL gene location

GeneLoc information about chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22P042394:  view genomic region     (about GC identifiers)

Start:
42,394,729 bp from pter      End:
42,454,460 bp from pter
Size:
59,732 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: WBP2L_HUMAN, Q6ICG8 (See protein sequence)
Recommended Name: Postacrosomal sheath WW domain-binding protein  
Size: 309 amino acids; 31909 Da
Sequence caution: Sequence=AAH22549.1; Type=Frameshift; Positions=159;
Secondary accessions: A3KFF7 A8MSG5 B3KXX4 Q8TBF0 Q8TBF3

Explore the universe of human proteins at neXtProt for WBP2NL: NX_Q6ICG8

Explore proteomics data for WBP2NL at MOPED


See WBP2NL Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_689826.2  
ENSEMBL proteins: 
 ENSP00000389598   ENSP00000328800   ENSP00000401002   ENSP00000332983   ENSP00000400236  
 ENSP00000442447  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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2 InterPro protein domains:
 IPR018826 WW-domain-binding
 IPR004182 GRAM

Graphical View of Domain Structure for InterPro Entry Q6ICG8

ProtoNet protein and cluster: Q6ICG8

UniProtKB/Swiss-Prot: WBP2L_HUMAN, Q6ICG8
Similarity: Contains 1 GRAM domain


WBP2NL for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: WBP2L_HUMAN, Q6ICG8
Function: May play a role in meotic resumption and pronuclear formation, mediated by a WW domain-signaling pathway
during fertilization (By similarity)

     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0050699WW domain binding ISS17289678
     
WBP2NL for ontologies           About GeneDecksing


Animal Models:
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miRNA
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miRTarBase miRNAs that target WBP2NL:
hsa-mir-335-5p (MIRT018697)

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3 qRT-PCR Assays for microRNAs that regulate WBP2NL:
hsa-miR-299-5p hsa-miR-576-5p hsa-miR-622
SwitchGear 3'UTR luciferase reporter plasmidWBP2NL 3' UTR sequence
Inhib. RNA
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytoskeleton3
peroxisome1
plasma membrane1

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0033011perinuclear theca ISS17289678

WBP2NL for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for WBP2NL
Interactions:

    Search GeneGlobe Interaction Network for WBP2NL

Gene Ontology (GO): 3 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0007126meiotic nuclear division IEA--
GO:0007343egg activation ISS17289678
GO:0035039male pronucleus assembly ISS17289678

WBP2NL for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for WBP2NL (WBP2L)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for WBP2NL gene: 
NM_152613.2  

Unigene Cluster for WBP2NL:

WBP2 N-terminal like
Hs.655541  [show with all ESTs]
Unigene Representative Sequence: AK128138
10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000412113 ENST00000329620(uc003bbv.1) ENST00000436265(uc003bbu.2)
ENST00000475341 ENST00000328823(uc003bbt.3 uc011apk.2) ENST00000461730
ENST00000445185 ENST00000487176 ENST00000470812 ENST00000543212
miRNA
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3 qRT-PCR Assays for microRNAs that regulate WBP2NL:
hsa-miR-299-5p hsa-miR-576-5p hsa-miR-622
SwitchGear 3'UTR luciferase reporter plasmidWBP2NL 3' UTR sequence
Inhib. RNA
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Predesigned siRNA for gene silencing in human, mouse, rat WBP2NL
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  QuantiFast Probe-based Assays in human, mouse, rat WBP2NL

Additional mRNA sequence: 

AF393575.1 AK128138.1 AK129656.1 AK296138.1 AK310980.1 BC022546.1 BC022549.1 BC038789.1 
CR456400.1 

7 DOTS entries:

DT.92051558  DT.435469  DT.86843042  DT.100777208  DT.86858132  DT.100737998  DT.100823590 

Selected AceView cDNA sequences (see all 214):

BU191730 CA388736 NM_019106 BM771840 NM_145734 BG315253 BP348363 AI369698 
T59361 BF508668 AI220013 N50539 AF285108 AF285107 NM_145733 CR604795 
BM770744 BF528667 BQ937737 BP348877 BQ924462 CR456572 AF285109 CR616689 

GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for WBP2NL    About this scheme

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10
SP1:              -     -     -                                   -         
SP2:              -     -     -                                             
SP3:                                                                        


ECgene alternative splicing isoforms for WBP2NL

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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WBP2NL expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
WBP2NL Expression
About this image

WBP2NL Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

WBP2NL Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.655541

UniProtKB/Swiss-Prot: WBP2L_HUMAN, Q6ICG8
Tissue specificity: Expressed in testis

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In Situ
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for WBP2NL

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for WBP2NL gene from Selected species (see all 13)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Wbp2nl1 , 5 WBP2 N-terminal like1, 5 75.87(n)1
67.03(a)1
  15 (38.56 cM)5
747161  NM_029066.11  NP_083342.11 
 822989845 
chicken
(Gallus gallus)
Aves WBP2NL6
WBP2 N-terminal like
30(a)
1 ↔ 1
1(49293376-49297070)
lizard
(Anolis carolinensis)
Reptilia WBP2NL6
WBP2 N-terminal like
36(a)
1 ↔ 1
5(27045365-27058471)
zebrafish
(Danio rerio)
Actinopterygii wbp2nl6
WBP2 N-terminal like
45(a)
1 ↔ 1
3(1997096-1999587) ENSDARG00000044852
fruit fly
(Drosophila melanogaster)
Insecta Wbp26
Wbp2 ortholog
21(a)
1 → many
3L(12843260-12846269)
worm
(Caenorhabditis elegans)
Secernentea C18B2.46
D2013.66
Protein D2013.6 (D2013.6) mRNA, complete cds
25(a)
23(a)
many ↔ many
many ↔ many
X(3604348-3605741) WBGene00015955
II(9329757-9331543) WBGene00008404


ENSEMBL Gene Tree for WBP2NL (if available)
TreeFam Gene Tree for WBP2NL (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for WBP2NL gene
WBP22  
1 SIMAP similar gene for WBP2NL using alignment to 5 protein entries:     WBP2L_HUMAN (see all proteins):
WBP2

WBP2NL for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for WBP2NL (see all 635)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 22 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1120321441,2
C--42394785(+) CCGCCC/TCTTTC 1 -- ut511Minor allele frequency- T:0.50CSA 2
rs2019976171,2
C--42394794(+) TCCATC/GTACGG 1 -- ut510--------
rs170027901,2,,4
C,F--42394835(+) TGAATC/GAGAGC 2 Q E mis1 ese36Minor allele frequency- G:0.04NA WA 4606
rs2011427671,2
--42394852(+) GAGAAC/GCGCCG 2 N K mis10--------
rs1875068261,2
C--42394895(+) TGAGGA/GGAAGC 1 -- int10--------
rs170027911,2
C,F,H--42395073(+) GGAGGC/TCGGAA 1 -- int18Minor allele frequency- T:0.04NA NS EA WA 678
rs1404054201,2
C--42395221(+) CCGGC-/GGGGGTTG 1 -- cds10--------
rs1333031,2
C,F,O,A,H--42395242(+) GGGGCG/CTTCGG 1 -- int115Minor allele frequency- C:0.45MN NA NS EA WA 1108
rs1128619581,2
C,F--42395301(+) AGGTAT/CTGGGT 1 -- int11Minor allele frequency- C:0.00CSA 1
rs799954421,2
F--42395307(+) TGGGTG/ATGTAT 1 -- int11Minor allele frequency- A:0.13WA 118

HapMap Linkage Disequilibrium report for WBP2NL (42394729 - 42454460 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for WBP2NL: --
Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing WBP2NL
DNA2.0 Custom Variant and Variant Library Synthesis for WBP2NL

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 610981    OMIM disorders: --

2 diseases for WBP2NL:    
About MalaCards
mitral valve stenosis    pulmonary edema


WBP2NL for disorders           About GeneDecksing


Export disorders for WBP2NL gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for WBP2NL gene integrated from 10 sources:
(articles sorted by number of sources associating them with WBP2NL)
    Utopia: connect your pdf to the dynamic
world of online information

  1. PAWP, a sperm-specific WW domain-binding protein, promotes meiotic resumption and pronuclear development during fertilization. (PubMed id 17289678)1, 2, 3 Wu A.T.H.... Oko R. (J. Biol. Chem. 2007)
  2. A genome annotation-driven approach to cloning the human ORFeome. (PubMed id 15461802)1, 2 Collins J.E.... Dunham I. (Genome Biol. 2004)
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
  6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  7. The DNA sequence of human chromosome 22. (PubMed id 10591208)2 Dunham I.... Wright H. (Nature 1999)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 164684 HGNC: 28389 AceView: SEPT3andMGC26816 Ensembl:ENSG00000183066 euGenes: HUgn164684
ECgene: WBP2NL H-InvDB: WBP2NL

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for WBP2NL Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for WBP2NL gene:
Search GeneIP for patents involving WBP2NL

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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