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Aliases for WBP11 Gene

Aliases for WBP11 Gene

  • WW Domain Binding Protein 11 2 3
  • Splicing Factor That Interacts With PQBP-1 And PP1 3 4
  • SH3 Domain-Binding Protein SNP70 3 4
  • WBP-11 3 4
  • NPWBP 3 4
  • SIPP1 3 4
  • Protein Phosphatase 1, Regulatory Subunit 165 3
  • Splicing Factor, PQBP1 And PP1 Interacting 3
  • WW Domain-Binding Protein 11 3
  • Npw38-Binding Protein NpwBP 3
  • PQBP1 And PP1 Interacting 2
  • Regulatory Subunit 165 2
  • Protein Phosphatase 1 2
  • Npw38-Binding Protein 4
  • Splicing Factor 2
  • PPP1R165 3
  • SNP70 4

External Ids for WBP11 Gene

Previous GeneCards Identifiers for WBP11 Gene

  • GC12M014679
  • GC12M015084
  • GC12M014839
  • GC12M014830
  • GC12M014939
  • GC12M014708

Summaries for WBP11 Gene

Entrez Gene Summary for WBP11 Gene

  • This gene encodes a nuclear protein, which colocalizes with mRNA splicing factors and intermediate filament-containing perinuclear networks. This protein has 95% amino acid sequence identity to the mouse Wbp11 protein. It contains two proline-rich regions that bind to the WW domain of Npw38, a nuclear protein, and thus this protein is also called Npw38-binding protein NpwBP. The Npw38-NpwBP complex may function as a component of an mRNA factory in the nucleus. [provided by RefSeq, Jul 2008]

GeneCards Summary for WBP11 Gene

WBP11 (WW Domain Binding Protein 11) is a Protein Coding gene. Among its related pathways are Spliceosome. GO annotations related to this gene include single-stranded DNA binding and protein phosphatase type 1 regulator activity.

UniProtKB/Swiss-Prot for WBP11 Gene

  • Activates pre-mRNA splicing. May inhibit PP1 phosphatase activity.

Gene Wiki entry for WBP11 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WBP11 Gene

Genomics for WBP11 Gene

Regulatory Elements for WBP11 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for WBP11 Gene

Start:
14,784,579 bp from pter
End:
14,803,540 bp from pter
Size:
18,962 bases
Orientation:
Minus strand

Genomic View for WBP11 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for WBP11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WBP11 Gene

Proteins for WBP11 Gene

  • Protein details for WBP11 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y2W2-WBP11_HUMAN
    Recommended name:
    WW domain-binding protein 11
    Protein Accession:
    Q9Y2W2
    Secondary Accessions:
    • Q96AY8

    Protein attributes for WBP11 Gene

    Size:
    641 amino acids
    Molecular mass:
    69998 Da
    Quaternary structure:
    • Interacts with PPP1CA, PPP1CB and PPP1CC (By similarity). Interacts via the PGR motif with PQBP1 in the nucleus. Interacts with the WW domains of WBP4.

neXtProt entry for WBP11 Gene

Proteomics data for WBP11 Gene at MOPED

Post-translational modifications for WBP11 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for WBP11 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for WBP11 Gene

Domains for WBP11 Gene

Protein Domains for WBP11 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for WBP11 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with WBP11: view

No data available for Gene Families and UniProtKB/Swiss-Prot for WBP11 Gene

Function for WBP11 Gene

Molecular function for WBP11 Gene

UniProtKB/Swiss-Prot Function: Activates pre-mRNA splicing. May inhibit PP1 phosphatase activity.

Gene Ontology (GO) - Molecular Function for WBP11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003697 single-stranded DNA binding TAS 10593949
GO:0005515 protein binding IPI 16713569
GO:0008599 protein phosphatase type 1 regulator activity IEA --
GO:0044822 poly(A) RNA binding IDA 22681889
GO:0050699 WW domain binding IPI 19592703
genes like me logo Genes that share ontologies with WBP11: view
genes like me logo Genes that share phenotypes with WBP11: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for WBP11 Gene

Localization for WBP11 Gene

Subcellular locations from UniProtKB/Swiss-Prot for WBP11 Gene

Nucleus. Cytoplasm. Note=Predominantly located in the nucleus with granular heterogeneous distribution. Excluded from nucleoli in interphase cells, distributed throughout cytoplasm in dividing cells. Colocalized with SC35 and U2B in the nucleus. In the cytoplasm, associates with the intermediate filament protein vimentin.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for WBP11 Gene COMPARTMENTS Subcellular localization image for WBP11 gene
Compartment Confidence
nucleus 5
cytoskeleton 1
cytosol 1
endoplasmic reticulum 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for WBP11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus TAS 10593949
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
GO:0016607 nuclear speck IEA --
genes like me logo Genes that share ontologies with WBP11: view

Pathways for WBP11 Gene

SuperPathways for WBP11 Gene

Superpath Contained pathways
1 Spliceosome
genes like me logo Genes that share pathways with WBP11: view

Pathways by source for WBP11 Gene

1 KEGG pathway for WBP11 Gene

Gene Ontology (GO) - Biological Process for WBP11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006364 rRNA processing IEA --
GO:0006396 RNA processing --
GO:0006397 mRNA processing IEA --
GO:0008380 RNA splicing IEA --
GO:0050790 regulation of catalytic activity IEA --
genes like me logo Genes that share ontologies with WBP11: view

Transcripts for WBP11 Gene

Unigene Clusters for WBP11 Gene

WW domain binding protein 11:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for WBP11

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for WBP11 Gene

No ASD Table

Relevant External Links for WBP11 Gene

GeneLoc Exon Structure for
WBP11
ECgene alternative splicing isoforms for
WBP11

Expression for WBP11 Gene

mRNA expression in normal human tissues for WBP11 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for WBP11 Gene

SOURCE GeneReport for Unigene cluster for WBP11 Gene Hs.655138

mRNA Expression by UniProt/SwissProt for WBP11 Gene

Q9Y2W2-WBP11_HUMAN
Tissue specificity: Ubiquitous. Highly expressed in the heart, pancreas, kidney skeletal muscle, placenta and brain (at protein level). Weakly expressed in liver and lung.
genes like me logo Genes that share expressions with WBP11: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for WBP11 Gene

Orthologs for WBP11 Gene

This gene was present in the common ancestor of animals.

Orthologs for WBP11 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia WBP11 35
  • 99.9 (n)
  • 99.84 (a)
WBP11 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 94 (a)
OneToMany
-- 36
  • 96 (a)
OneToMany
dog
(Canis familiaris)
Mammalia WBP11 35
  • 94.38 (n)
  • 98.75 (a)
WBP11 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Wbp11 35
  • 88.14 (n)
  • 95.08 (a)
Wbp11 16
Wbp11 36
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 91 (a)
OneToMany
-- 36
  • 77 (a)
OneToMany
-- 36
  • 90 (a)
OneToMany
-- 36
  • 92 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Wbp11 35
  • 88.37 (n)
  • 95.75 (a)
chicken
(Gallus gallus)
Aves WBP11 36
  • 86 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia WBP11 36
  • 85 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia MGC68961 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.1463 35
zebrafish
(Danio rerio)
Actinopterygii Dr.28383 35
wbp11 36
  • 59 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG2685 36
  • 39 (a)
OneToOne
EG:100G10.1 37
  • 65 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.11662 35
Species with no ortholog for WBP11:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for WBP11 Gene

ENSEMBL:
Gene Tree for WBP11 (if available)
TreeFam:
Gene Tree for WBP11 (if available)

Paralogs for WBP11 Gene

Pseudogenes.org Pseudogenes for WBP11 Gene

genes like me logo Genes that share paralogs with WBP11: view

No data available for Paralogs for WBP11 Gene

Variants for WBP11 Gene

Sequence variations from dbSNP and Humsavar for WBP11 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs1012682 -- 14,798,407(-) TTGTC(C/T)TGCTA intron-variant
rs1012683 -- 14,798,116(-) ATAAA(C/T)TTGTT intron-variant
rs1051910 -- 14,786,175(-) CTTGA(A/G)CTGAT downstream-variant-500B
rs2052325 -- 14,795,500(+) gctga(C/G)gcagg intron-variant
rs3083899 -- 14,797,367(+) ATTCT(-/CT)GATTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for WBP11 Gene

Variant ID Type Subtype PubMed ID
nsv898817 CNV Gain 21882294
esv2678294 CNV Deletion 23128226
nsv53585 CNV Loss 16902084

Relevant External Links for WBP11 Gene

HapMap Linkage Disequilibrium report
WBP11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for WBP11 Gene

Disorders for WBP11 Gene

No disorders were found for WBP11 Gene.

No data available for UniProtKB/Swiss-Prot for WBP11 Gene

Publications for WBP11 Gene

  1. Association of two nuclear proteins, Npw38 and NpwBP, via the interaction between the WW domain and a novel proline-rich motif containing glycine and arginine. (PMID: 10593949) Komuro A. … Kato S. (J. Biol. Chem. 1999) 2 3 4 23
  2. A nuclear SH3 domain-binding protein that colocalizes with mRNA splicing factors and intermediate filament-containing perinuclear networks. (PMID: 11375989) Craggs G. … Kellie S. (J. Biol. Chem. 2001) 3 4 23
  3. SIPP1, a novel pre-mRNA splicing factor and interactor of protein phosphatase-1. (PMID: 14640981) Llorian M. … Bollen M. (Biochem. J. 2004) 3 4 23
  4. Structure and function of the two tandem WW domains of the pre-mRNA splicing factor FBP21 (formin-binding protein 21). (PMID: 19592703) Huang X. … Shi Y. (J. Biol. Chem. 2009) 3 4 23
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for WBP11 Gene

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