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Aliases for WASH7P Gene

Aliases for WASH7P Gene

  • WAS Protein Family Homolog 7 Pseudogene 2 3 5
  • Family With Sequence Similarity 39, Member F 2 3
  • WAS Protein Family Homolog 5 Pseudogene 3
  • FAM39F 3
  • WASH5P 3

External Ids for WASH7P Gene

Summaries for WASH7P Gene

GeneCards Summary for WASH7P Gene

WASH7P (WAS Protein Family Homolog 7 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WASH7P Gene

Genomics for WASH7P Gene

Regulatory Elements for WASH7P Gene

Enhancers for WASH7P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F000998 0.7 ENCODE 31.3 -971.1 -971070 3.5 CREB3L1 MLX FEZF1 DMAP1 SLC30A9 ZNF143 ZNF263 SP3 NFYC MEF2D ENSG00000230092 WASH7P ENSG00000272512 LOC100288379 CCNL2 PLEKHN1 ENSG00000237094 MIR6727 LOC100288069 ENSG00000240731
GH01F000983 1 Ensembl 27 -954.7 -954654 0.8 ZFP64 RAD21 GLIS2 ZNF354C ZNF143 CREM ZNF654 ZNF680 CEBPB REST CCNL2 MIR6727 ENSG00000240731 LOC100288379 ENSG00000230092 FAM87B SLC35E2 LOC100129381 WASH7P LINC00115
GH01F000957 0.2 ENCODE 12.2 -930.2 -930175 4.1 HDGF PKNOX1 CREB3L1 ARID4B SIN3A ZNF2 YY1 ZNF143 SP3 SP5 NOC2L ENSG00000230092 LOC100288379 PLEKHN1 CCNL2 ATAD3A PUSL1 WASH7P MIR6727 ENSG00000237094
GH01F000923 0.2 ENCODE 9.7 -895.2 -895212 1.6 SIN3A GLIS2 KLF7 SP3 ZNF610 SMARCA4 GLIS1 WT1 SP7 CTCF LOC100287934 CICP3 MIR6727 LINC01786 LINC00115 ENSG00000240731 ENSG00000272455 SLC35E2 MIB2 CCNL2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around WASH7P on UCSC Golden Path with GeneCards custom track

Promoters for WASH7P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001740671 370 2001

Genomic Location for WASH7P Gene

Chromosome:
1
Start:
14,362 bp from pter
End:
29,570 bp from pter
Size:
15,209 bases
Orientation:
Minus strand

Genomic View for WASH7P Gene

Genes around WASH7P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WASH7P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WASH7P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WASH7P Gene

Proteins for WASH7P Gene

Post-translational modifications for WASH7P Gene

No Post-translational modifications

No data available for DME Specific Peptides for WASH7P Gene

Domains & Families for WASH7P Gene

Gene Families for WASH7P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with WASH7P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WASH7P Gene

Function for WASH7P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WASH7P Gene

Localization for WASH7P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for WASH7P Gene

Pathways & Interactions for WASH7P Gene

SuperPathways for WASH7P Gene

No Data Available

Interacting Proteins for WASH7P Gene

Gene Ontology (GO) - Biological Process for WASH7P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WASH7P Gene

Transcripts for WASH7P Gene

mRNA/cDNA for WASH7P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for WASH7P Gene

No ASD Table

Relevant External Links for WASH7P Gene

GeneLoc Exon Structure for
WASH7P
ECgene alternative splicing isoforms for
WASH7P

Expression for WASH7P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for WASH7P Gene

NURSA nuclear receptor signaling pathways regulating expression of WASH7P Gene:

WASH7P
genes like me logo Genes that share expression patterns with WASH7P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for WASH7P Gene

Orthologs for WASH7P Gene

Evolution for WASH7P Gene

ENSEMBL:
Gene Tree for WASH7P (if available)
TreeFam:
Gene Tree for WASH7P (if available)

No data available for Orthologs for WASH7P Gene

Paralogs for WASH7P Gene

No data available for Paralogs for WASH7P Gene

Variants for WASH7P Gene

Sequence variations from dbSNP and Humsavar for WASH7P Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1045472 -- 16,996(-) GTTCC(A/G/T)TCCTA nc-transcript-variant, downstream-variant-500B
rs1045587 -- 14,727(-) ACAGG(C/T)AGAGG nc-transcript-variant, downstream-variant-500B
rs1045833 -- 14,542(-) CTGGC(C/T)TGAGG nc-transcript-variant, downstream-variant-500B
rs111588939 -- 17,403(+) CTGAC(A/G)CCCGC intron-variant, nc-transcript-variant
rs111926577 -- 17,201(+) ACTGC(A/G)CCTGT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for WASH7P Gene

Variant ID Type Subtype PubMed ID
dgv1e59 CNV duplication 20981092
dgv1n106 CNV duplication 24896259
dgv1n82 CNV duplication 23825009
esv27265 CNV gain+loss 19812545
esv3433926 CNV duplication 20981092
nsv1076307 CNV duplication 25765185
nsv1147468 CNV duplication 26484159
nsv428112 CNV gain 18775914
nsv469759 CNV gain 16826518
nsv471591 CNV loss 15918152
nsv482937 CNV loss 15286789
nsv7879 CNV gain+loss 18304495
nsv945484 CNV duplication 23825009
nsv945699 CNV duplication 23825009
nsv945700 CNV duplication 23825009

Relevant External Links for WASH7P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WASH7P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WASH7P Gene

Disorders for WASH7P Gene

Relevant External Links for WASH7P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WASH7P

No disorders were found for WASH7P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WASH7P Gene

Publications for WASH7P Gene

  1. Human subtelomeric WASH genes encode a new subclass of the WASP family. (PMID: 18159949) Linardopoulou E.V. … Trask B.J. (PLoS Genet. 2007) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for WASH7P Gene

Sources for WASH7P Gene

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