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Aliases for WASH5P Gene

Aliases for WASH5P Gene

  • WAS Protein Family Homolog 5 Pseudogene 2 3 5

External Ids for WASH5P Gene

Previous GeneCards Identifiers for WASH5P Gene

  • GC01U901690
  • GC01M000001

Summaries for WASH5P Gene

GeneCards Summary for WASH5P Gene

WASH5P (WAS Protein Family Homolog 5 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WASH5P Gene

Genomics for WASH5P Gene

Regulatory Elements for WASH5P Gene

Enhancers for WASH5P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G000288 1.5 FANTOM5 ENCODE dbSUPER 5.4 -218.5 -218477 2.9 TBP SREBF2 SIN3A PRPF4 RCOR1 FOS ZNF263 SMARCC1 CEBPB USF2 PLPP2 TMEM259 MIER2 POLRMT WASH5P GZMM MISP RNF126 C2CD4C LILRA3
GH19G000280 0.5 dbSUPER 9.7 -209.0 -209001 0.8 OSR2 NR2C1 ZIC2 EZH2 THEG C2CD4C WASH5P PLPP2 LILRA3 VN2R11P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WASH5P on UCSC Golden Path with GeneCards custom track

Promoters for WASH5P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000105429 926 1401

Genomic Location for WASH5P Gene

Chromosome:
19
Start:
60,951 bp from pter
End:
71,626 bp from pter
Size:
10,676 bases
Orientation:
Minus strand

Genomic View for WASH5P Gene

Genes around WASH5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WASH5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WASH5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WASH5P Gene

Proteins for WASH5P Gene

Post-translational modifications for WASH5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for WASH5P Gene

Domains & Families for WASH5P Gene

Gene Families for WASH5P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with WASH5P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WASH5P Gene

Function for WASH5P Gene

Phenotypes for WASH5P Gene

GenomeRNAi human phenotypes for WASH5P:
genes like me logo Genes that share phenotypes with WASH5P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WASH5P Gene

Localization for WASH5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for WASH5P Gene

Pathways & Interactions for WASH5P Gene

SuperPathways for WASH5P Gene

No Data Available

Interacting Proteins for WASH5P Gene

Gene Ontology (GO) - Biological Process for WASH5P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WASH5P Gene

Drugs & Compounds for WASH5P Gene

No Compound Related Data Available

Transcripts for WASH5P Gene

mRNA/cDNA for WASH5P Gene

(1) Additional mRNA sequences :
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for WASH5P Gene

WAS protein family homolog 5 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for WASH5P Gene

No ASD Table

Relevant External Links for WASH5P Gene

GeneLoc Exon Structure for
WASH5P
ECgene alternative splicing isoforms for
WASH5P

Expression for WASH5P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WASH5P Gene

NURSA nuclear receptor signaling pathways regulating expression of WASH5P Gene:

WASH5P

SOURCE GeneReport for Unigene cluster for WASH5P Gene:

Hs.572592
genes like me logo Genes that share expression patterns with WASH5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WASH5P Gene

Orthologs for WASH5P Gene

Evolution for WASH5P Gene

ENSEMBL:
Gene Tree for WASH5P (if available)
TreeFam:
Gene Tree for WASH5P (if available)

No data available for Orthologs for WASH5P Gene

Paralogs for WASH5P Gene

No data available for Paralogs for WASH5P Gene

Variants for WASH5P Gene

Sequence variations from dbSNP and Humsavar for WASH5P Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1001640151 -- 72,793(+) ATATC(C/T)GAGTG downstream-variant-500B, upstream-variant-2KB
rs1006508662 -- 63,651(+) CCAGA(A/G)CTTCA intron-variant
rs1011744864 -- 71,312(+) CGGCT(C/T)CTCCG nc-transcript-variant, upstream-variant-2KB
rs1019273732 -- 64,787(+) GCATG(C/T)TTTGA intron-variant
rs1021717627 -- 68,680(+) GTCCA(G/T)GAAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for WASH5P Gene

Variant ID Type Subtype PubMed ID
dgv1664n106 CNV duplication 24896259
dgv1956e59 CNV duplication 20981092
dgv1957e59 CNV duplication 20981092
esv22059 CNV gain+loss 19812545
esv994482 CNV gain 20482838
nsv1076458 CNV duplication 25765185
nsv1077852 CNV duplication 25765185
nsv1148144 CNV duplication 26484159
nsv471520 CNV gain 19718026
nsv820962 CNV duplication 20802225
nsv960766 CNV duplication 23825009
nsv960767 CNV duplication 23825009
nsv961258 CNV duplication 23825009
nsv963087 CNV duplication 23825009
nsv963088 CNV duplication 23825009
nsv9651 CNV gain+loss 18304495

Relevant External Links for WASH5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WASH5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WASH5P Gene

Disorders for WASH5P Gene

Relevant External Links for WASH5P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WASH5P

No disorders were found for WASH5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WASH5P Gene

Publications for WASH5P Gene

  1. Human subtelomeric WASH genes encode a new subclass of the WASP family. (PMID: 18159949) Linardopoulou E.V. … Trask B.J. (PLoS Genet. 2007) 2 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for WASH5P Gene

Sources for WASH5P Gene

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