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Aliases for WASH4P Gene

Aliases for WASH4P Gene

  • WAS Protein Family Homolog 4 Pseudogene 2 3 5
  • Family With Sequence Similarity 39, Member C Pseudogene 2 3
  • FAM39CP 3 4
  • Putative WAS Protein Family Homolog 4 3
  • Pseudogene Of CXYorf1 3
  • Protein FAM39CP 4
  • CXYorf1P 3

External Ids for WASH4P Gene

Previous HGNC Symbols for WASH4P Gene

  • FAM39CP

Previous GeneCards Identifiers for WASH4P Gene

  • GC16M000008
  • GC16M000064

Summaries for WASH4P Gene

GeneCards Summary for WASH4P Gene

WASH4P (WAS Protein Family Homolog 4 Pseudogene) is a Pseudogene. GO annotations related to this gene include actin binding and alpha-tubulin binding.

UniProtKB/Swiss-Prot for WASH4P Gene

  • May act as a nucleation-promoting factor at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization, playing a key role in the fission of tubules that serve as transport intermediates during endosome sorting.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WASH4P Gene

Genomics for WASH4P Gene

Regulatory Elements for WASH4P Gene

Enhancers for WASH4P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F000233 1.2 ENCODE 31.5 -216.9 -216859 2.9 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 JMJD8 RHOT2 LOC105371038 WASH4P ENSG00000268836 ENSG00000259840 HBZP1 ENSG00000262528 ENSG00000260022 ENSG00000269482
GH16F000550 1.6 FANTOM5 Ensembl ENCODE 23 -538.4 -538402 11.8 MLX ZFP64 ARID4B ZNF2 ZNF48 ZNF121 GLIS2 ZNF202 SP3 SP5 GNG13 LOC105371038 PRR35 WASH4P ENSG00000262528 ENSG00000268836 HBZP1 PRSS29P JMJD8 ENSG00000261505
GH16F000137 1.1 ENCODE 24.4 -120.1 -120111 2.2 HDGF PKNOX1 ARNT CREB3L1 ARID4B DMAP1 ZNF2 ZNF143 ZNF207 KLF13 NPRL3 JMJD8 WASH4P RHOT2 CAPN15 LOC105371038 ENSG00000228779 ENSG00000268836 ENSG00000262528 GC16P000150
GH16F000640 1.2 ENCODE 20.6 -627.5 -627465 10.1 MLX CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZFP41 IFT140 ENSG00000262528 LOC105371038 ENSG00000268836 WFIKKN1 JMJD8 ENSG00000269482 WASH4P RHBDL1 TMEM204
GH16F000066 1.8 FANTOM5 Ensembl ENCODE 12.2 -55.4 -55411 13.6 HDGF PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 NPRL3 RHOT2 CAPN15 WASH4P MPG JMJD8 ENSG00000228779 HBZ HBM SNRNP25
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WASH4P on UCSC Golden Path with GeneCards custom track

Genomic Location for WASH4P Gene

Chromosome:
16
Start:
14,079 bp from pter
End:
18,091 bp from pter
Size:
4,013 bases
Orientation:
Minus strand

Genomic View for WASH4P Gene

Genes around WASH4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WASH4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WASH4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WASH4P Gene

Proteins for WASH4P Gene

  • Protein details for WASH4P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MWX3-WASH4_HUMAN
    Recommended name:
    Putative WAS protein family homolog 4
    Protein Accession:
    A8MWX3

    Protein attributes for WASH4P Gene

    Size:
    477 amino acids
    Molecular mass:
    51595 Da
    Quaternary structure:
    • Interacts (via WHD1 region) with FAM21C; the interaction is direct (By similarity).
    Miscellaneous:
    • WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals (PubMed:18159949). It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.

neXtProt entry for WASH4P Gene

Post-translational modifications for WASH4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for WASH4P Gene

Domains & Families for WASH4P Gene

Gene Families for WASH4P Gene

Protein Domains for WASH4P Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for WASH4P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A8MWX3

UniProtKB/Swiss-Prot:

WASH4_HUMAN :
  • Contains 1 WH2 domain.
  • Belongs to the WASH1 family.
Domain:
  • Contains 1 WH2 domain.
Family:
  • Belongs to the WASH1 family.
genes like me logo Genes that share domains with WASH4P: view

Function for WASH4P Gene

Molecular function for WASH4P Gene

UniProtKB/Swiss-Prot Function:
May act as a nucleation-promoting factor at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization, playing a key role in the fission of tubules that serve as transport intermediates during endosome sorting.

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WASH4P Gene

Localization for WASH4P Gene

Subcellular locations from UniProtKB/Swiss-Prot for WASH4P Gene

Early endosome membrane. Recycling endosome membrane. Note=Localization to the endosome membrane is mediated via its interaction with FAM21. {ECO:0000250 UniProtKB:A8K0Z3}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for WASH4P gene
Compartment Confidence
endosome 4
cytosol 3
mitochondrion 2
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for WASH4P Gene

Pathways & Interactions for WASH4P Gene

SuperPathways for WASH4P Gene

No Data Available

Interacting Proteins for WASH4P Gene

Gene Ontology (GO) - Biological Process for WASH4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WASH4P Gene

Transcripts for WASH4P Gene

mRNA/cDNA for WASH4P Gene

Alternative Splicing Database (ASD) splice patterns (SP) for WASH4P Gene

No ASD Table

Relevant External Links for WASH4P Gene

GeneLoc Exon Structure for
WASH4P
ECgene alternative splicing isoforms for
WASH4P

Expression for WASH4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for WASH4P Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for WASH4P Gene



Protein tissue co-expression partners for WASH4P Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of WASH4P Gene:

WASH4P
genes like me logo Genes that share expression patterns with WASH4P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for WASH4P Gene

Orthologs for WASH4P Gene

This gene was present in the common ancestor of animals.

Orthologs for WASH4P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia WASH4P 35
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia WASH4P 35
  • 80 (a)
OneToOne
cow
(Bos Taurus)
Mammalia WASH1 35
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia WASH4P 35
  • 75 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Wash 35
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia WASH4P 35
  • 67 (a)
OneToOne
chicken
(Gallus gallus)
Aves WASH1 35
  • 69 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia WASH4P 35
  • 66 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii wash 35
  • 59 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta wash 35
  • 27 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2847 35
  • 43 (a)
OneToOne
Species where no ortholog for WASH4P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for WASH4P Gene

ENSEMBL:
Gene Tree for WASH4P (if available)
TreeFam:
Gene Tree for WASH4P (if available)

Paralogs for WASH4P Gene

(8) SIMAP similar genes for WASH4P Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with WASH4P: view

No data available for Paralogs for WASH4P Gene

Variants for WASH4P Gene

Variation tolerance for WASH4P Gene

Gene Damage Index Score: 14.01; 96.03% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for WASH4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WASH4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for WASH4P Gene

Disorders for WASH4P Gene

No disorders were found for WASH4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for WASH4P Gene

Publications for WASH4P Gene

  1. Human subtelomeric WASH genes encode a new subclass of the WASP family. (PMID: 18159949) Linardopoulou E.V. … Trask B.J. (PLoS Genet. 2007) 2 3 4 64
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 3 4 64
  3. Characterization of the murine orthologue of a novel human subtelomeric multigene family. (PMID: 11701968) Gianfrancesco F. … D'Urso M. (Cytogenet. Cell Genet. 2001) 2 3 64
  4. The relationship between chromosome structure and function at a human telomeric region. (PMID: 9054936) Flint J. … Higgs D.R. (Nat. Genet. 1997) 2 3 64
  5. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3 64

Products for WASH4P Gene

Sources for WASH4P Gene

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