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Aliases & Descriptions for WAS
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| IMD2 2, 3, 5 | | OTTHUMP00000032395 2 | | THC 2 | | THC1 2, 5 | | WASP 1, 2 | | WASp 3 |
| | | Descriptions |
|---|
| Wiskott-Aldrich syndrome (eczema-thrombocytopenia) 2 | | Wiskott-Aldrich syndrome protein 2 | | thrombocytopenia 1 (X-linked) 1, 2 |
|
| | Search outside databases for aliases for WAS genePrevious GC identifers: GC0XP047344 GC0XP046802 GC0XP047588 GC0XP048298 |
Summaries for WAS(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for WAS: The Wiskott-Aldrich syndrome (WAS) family of proteins share similar domain structure, and are involved in transduction of signals from receptors on the cell surface to the actin cytoskeleton. The presence of a number of different motifs suggests that they are regulated by a number of different stimuli, and interact with multiple proteins. Recent studies have demonstrated that these proteins, directly or indirectly, associate with the small GTPase, Cdc42, known to regulate formation of actin filaments, and the cytoskeletal organizing complex, Arp2/3. Wiskott-Aldrich syndrome is a rare, inherited, X-linked, recessive disease characterized by immune dysregulation and microthrombocytopenia, and is caused by mutations in the WAS gene. The WAS gene product is a cytoplasmic protein, expressed exclusively in hematopoietic cells, which show signalling and cytoskeletal abnormalities in WAS patients. A transcript variant arising as a result of alternative promoter usage, and containing a different 5' UTR sequence, has been described, however, its full-length nature is not known. [provided by RefSeq] UniProtKB/Swiss-Prot: WASP_HUMAN, P42768Function: Effector protein for Rho-type GTPases, providing a link with the Arp2/3 complex that regulates the structure and dynamics of the actin cytoskeleton. Important for efficient actin polymerization. Possible regulator of lymphocyte and platelet functionGene Wiki entry for WAS (Wiskott-Aldrich_syndrome_protein) |
Genomic Location for WAS
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the WAS gene 
Entrez Gene cytogenetic band: Xp11.4-p11.21 Ensembl cytogenetic band: Xp11.23 HGNC cytogenetic band: Xp11.4-p11.21WAS Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome X GeneLoc Exon Structure GeneLoc location for GC0XP048427:
(about GC identifiers)
Start:
|
48,427,141 bp from pter |
End:
|
48,434,759 bp from pter |
Size:
|
7,619 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000023.9 NT_079573.3
| Proteins for WAS
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: WASP_HUMAN, P42768 (See
protein sequence)Recommended Name: Wiskott-Aldrich syndrome protein Size: 502 amino acids; 52913 Da
Subunit: Binds to CDC42, RAC, NCK, FYN, SRC kinase FGR, BTK, ABL, PSTPIP1, WIP, and to the p85 subunit of PLC-gamma. Binds the Arp2/3 complex
Subcellular location: Cytoplasm, cytoskeleton
PDB structures from and Proteopedia :1CEE (3D)
 1EJ5 (3D)
 1T84 (3D)
 2A3Z (3D)
 2K42 (3D)
 2OT0 (3D)
 
Secondary accessions: Q9BU11 Q9UNJ9Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000368.1
ENSEMBL proteins: ENSP00000365891
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for WAS: Assays for WAS: | Protein
Domains/ Families for WAS(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P42768
ProtoNet protein and cluster: P42768 1 Blocks protein family: IPB003124 Actin-binding WH2
UniProtKB/Swiss-Prot: WASP_HUMAN, P42768Domain: The WH1 (Wasp homology 1) domain may bind a Pro-rich ligandDomain: The CRIB (Cdc42/Rac-interactive-binding) region binds to the C-terminal WH2 domain in the autoinhibited state of the protein. Binding of Rho-type GTPases to the CRIB induces a conformation change and leads to activationSimilarity: Contains 1 CRIB domainSimilarity: Contains 1 WH1 domainSimilarity: Contains 1 WH2 domain | Gene Function for WAS
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000377
Applied Biosystems Silencer® siRNAs for WAS
Sigma-Aldrich siRNA and siRNA Panels for WAS  Sigma-Aldrich shRNA Panels and shRNA for WAS  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000377                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000377                                  untagged cDNA clone in CMV expression vector: NM_000377 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000377
UniProtKB/Swiss-Prot: WASP_HUMAN, P42768Function: Effector protein for Rho-type GTPases, providing a link with the Arp2/3 complex that regulates the structure and dynamics of the actin cytoskeleton. Important for efficient actin polymerization. Possible regulator of lymphocyte and platelet function7 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Was):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for WAS
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/9 Sigma-Aldrich "Your Favorite Gene" Pathways for WAS (Your Favorite Gene powered by Ingenuity) (see all 9
) 
Gene Network CentralTM Interacting Genes and Proteins Network for WAS 
5/80 Interacting proteins for WAS (ENSP000003658913 P427681, 2) via UniProtKB, MINT, and/or STRING (see all 80
)About this table
5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9
): About this table
|
Drugs & Compounds for WAS(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for WAS 10/15 Novoseek chemical compound relationships for WAS gene (see all 15
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| wiskostatin |
82.27 |
3 |
15235593 (1), 16472665 (1) |
| pip2 |
57.25 |
6 |
16006560 (3), 15260983 (1), 17302440 (1) |
| tyrosine |
46.62 |
74 |
9731041 (5), 10590061 (5), 10532312 (3), 19234535 (3) (see all 26) |
| proline |
36.37 |
6 |
11069762 (2), 12160237 (1), 8892607 (1), 17207458 (1) |
| gdp |
7.34 |
1 |
10967094 (1) |
| hydrogen |
3.30 |
2 |
11714264 (1), 15469902 (1) |
| phosphatidylinositol |
2.08 |
6 |
16968699 (2), 9731041 (1), 12891007 (1), 10590061 (1) |
| calcium |
1.37 |
2 |
16582881 (1), 15728466 (1) |
| atp |
0.00 |
2 |
17251352 (1), 15094799 (1) |
| lipid |
0.00 |
11 |
12196287 (4), 17854313 (1), 18483558 (1), 15509508 (1) |
About this table
|
Transcripts for WAS(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000377
Sigma-Aldrich siRNA and siRNA Panels for WAS  Sigma-Aldrich shRNA Panels and shRNA for WAS  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000377 REFSEQ mRNAs for WAS gene: NM_000377.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000377               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000377                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000377                                  untagged cDNA clone in CMV expression vector: NM_000377  Additional cDNA sequence: BC002961.1 BC012738.2 CR591854.1 CR605612.1 CR605854.1 U12707.1 U19927.1 5 DOTS entries: DT.212325 DT.95100049 DT.100873436 DT.86854947 DT.86854950 24/111 AceView cDNA sequences (see all 111
):BI766599 U19927 CR605612 BM458492 BM819869 AA312206 BE270046 BC002961 BQ012196 AW574817 CR605854 BM802845 BQ060937 BQ055374 BX283433 BM563924 CA427815 BC012738 BI764081 AA825986 BM849088 CR591854 H61193 BX411081
highest scoring ESTs for WAS:U12707 AA250834 AA825986 AA897085 AI218705 AI281206 AI470207 AI660043 AI886760 AW008801 Unigene Cluster for WAS: Wiskott-Aldrich syndrome (eczema-thrombocytopenia) Hs.2157 [show with all ESTs]Unigene Representative Sequence: NM_000377
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for WAS
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7 | ^ | 8a | · | 8b | ^ | 9 | ^ | 10a | · | 10b | ^ | 11a | · | 11b | ^ | 12 | ^ | 13 | ^ | 14 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for WAS
1 Ensembl transcript including schematic representation: ENST00000376701
|
Expression for WAS
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| WAS expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for WAS
1 / 2 / 3 7 probe-sets matching WAS gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GCTCCCCCTC
SOURCE GeneReport for Unigene cluster: Hs.2157
Expression variation in blood from EXPOLDB for WAS UniProtKB/Swiss-Prot: WASP_HUMAN, P42768Tissue specificity: Expressed predominantly in the thymus. Also found, to a much lesser extent, in the spleen |
Orthologs for WAS
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for WAS gene from 5 species
About this table Species with no ortholog for WAS
ENSEMBL Gene Tree for WAS | Paralogs for WAS(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for WAS gene
- WASL2
|
SNPs/Variants for WAS(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for WAS (up to first 250kb)
|
Disorders & Mutations for WAS
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 300392 disorders: 301000 313900 300299 313900 UniProtKB/Swiss-Prot: WASP_HUMAN, P42768
Defects in WAS are the cause of Wiskott-Aldrich syndrome (WAS) [MIM:301000]; also known as eczema-thrombocytopenia-immunodeficiency syndrome. WAS is an X-linked recessive immunodeficiency characterized by eczema, thrombocytopenia, recurrent infections, and bloody diarrhea. Death usually occurs before age 10 Defects in WAS are the cause of thrombocytopenia type 1 (THC1) [MIM:313900]. Thrombocytopenia is defined by a decrease in the number of platelets in circulating blood, resulting in the potential for increased bleeding and decreased ability for clotting Defects in WAS are a cause of X-linked severe congenital neutropenia (XLN) [MIM:300299]. XLN is an X-linked immunodeficiency syndrome characterized by recurrent major bacterial infections, severe congenital neutropenia, and monocytopenia10/19 Novoseek disease relationships for WAS gene (see all 19
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| wiskott-aldrich syndrome |
98.98 |
330 |
17205972 (3), 15616597 (3), 9616151 (2), 8805332 (2) (see all 99) |
| thrombocytopenia 1 |
94.63 |
29 |
11877312 (2), 15203732 (2), 8743175 (2), 8528199 (2) (see all 22) |
| scar1 |
91.39 |
28 |
9889097 (6), 12601690 (5), 12429845 (4), 11747816 (3) (see all 6) |
| neutropenia, severe congenital, x-linked |
89.48 |
3 |
11877312 (1), 15203732 (1), 11242115 (1) |
| eczema |
82.77 |
9 |
10737997 (1), 12969986 (1), 10447259 (1), 12894849 (1) (see all 8) |
| thrombocytopenia |
70.46 |
28 |
8528198 (4), 16522820 (2), 15218418 (2), 10737997 (1) (see all 16) |
| immunodeficiency |
65.38 |
38 |
14612666 (2), 9616151 (1), 10737997 (1), 12367583 (1) (see all 35) |
| abnormal platelets |
63.88 |
1 |
10397718 (1) |
| scar |
51.85 |
32 |
14762109 (3), 11854309 (2), 18388318 (2), 15196561 (2) (see all 20) |
| x-linked agammaglobulinemia |
42.39 |
1 |
10590061 (1) |
About this table
GeneTests: WAS WAS-Related Disorders Human Gene Mutation Database: WAS Genetic Association Database: WAS
|
Medical News for WAS(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for WAS (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/352 PubMed articles for WAS gene (see all 352
):- X-linked thrombocytopenia and Wiskott-Aldrich syndrome are allelic diseases with mutations in the WASP gene. (PubMed id 7795648)1, 2, 3, 4 Villa A.... Vezzoni P. (1995)
- Identification of WASP mutations in patients with Wiskott-Aldrich syndrome and isolated thrombocytopenia reveals allelic heterogeneity at the WAS locus. (PubMed id 8528198)1, 3, 4 Kolluri R.... Siminovitch K.A. (1995)
- Defective actin polymerization in EBV-transformed B-cell lines from patients with the Wiskott-Aldrich syndrome. (PubMed id 9713366)1, 3, 4 Facchetti F.... Nelson D.L. (1998)
- Phosphorylation of tyrosine 291 enhances the ability of WASp to stimulate actin polymerization and filopodium formation. Wiskott- Aldrich Syndrome protein. (PubMed id 12235133)1, 3, 4 Cory G.O.... Ridley A.J. (2002)
- The identification and characterization of two promoters and the complete genomic sequence for the Wiskott-Aldrich syndrome gene. (PubMed id 10066431)1, 3, 4 Hagemann T.L. and Kwan S.-P. (1999)
- Phosphorylation of the WASP-VCA domain increases its affinity for the Arp2/3 complex and enhances actin polymerization by WASP. (PubMed id 12769847)1, 3, 4 Cory G.O.C.... Ridley A.J. (2003)
- Constitutively activating mutation in WASP causes X-linked severe congenital neutropenia. (PubMed id 11242115)1, 3, 4 Devriendt K.... Vandenberghe P. (2001)
- Variable expression of WASP in B cell lines of Wiskott-Aldrich syndrome patients. (PubMed id 9126958)1, 3, 4 Remold-O'Donnell E.... Rosen F.S. (1997)
- Novel mutations in the Wiskott-Aldrich syndrome protein gene and their effects on transcriptional, translational, and clinical phenotypes. (PubMed id 10447259)1, 3, 4 Lemahieu V.... Francke U. (1999)
- WASP gene mutations in Wiskott-Aldrich syndrome and X-linked thrombocytopenia. (PubMed id 8528199)1, 3, 4 Derry J.M.J.... Francke U. (1995)
|
Search for WAS
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing WAS
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing WAS
(According to HUGE)
About This Section
| -- |
Specialized Databases showing WAS(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| ATLAS Chromosomes in Cancer entry for WAS | Genetics and Cytogenetics in Oncology and Haematology | | WASbase | http://bioinf.uta.fi/WASbase/ | | WASPbase | http://homepage.mac.com/kohsukeimai/wasp/WASPbase.html | | GeneReviews | http://www.genetests.org/query?gene=WAS | | Wikipedia | http://en.wikipedia.org/wiki/Wiskott-Aldrich_syndrome_protein |
|
| | | About This Section
| --
| Services for WAS(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for WAS:

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| Antibodies & Assays for WAS  (WASP) |
| | Recombinant Proteins (WASP ) | | Antibodies (WASP ) |
| | | Search Tocris compounds for WAS |
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