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Aliases for WARS2-IT1 Gene

Subcategory (RNA class) for WARS2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for WARS2-IT1 Gene

  • WARS2 Intronic Transcript 1 2 3 5
  • WARS2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for WARS2-IT1 Gene

Previous GeneCards Identifiers for WARS2-IT1 Gene

  • GC00U933489
  • GC01M119591
  • GC01P119590

Summaries for WARS2-IT1 Gene

GeneCards Summary for WARS2-IT1 Gene

WARS2-IT1 (WARS2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WARS2-IT1 Gene

Genomics for WARS2-IT1 Gene

Regulatory Elements for WARS2-IT1 Gene

Enhancers for WARS2-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F119046 1 Ensembl ENCODE 0.8 -0.3 -262 1.5 PBX2 WARS2 WARS2-IT1 PIR51925
GH01F119079 0.9 Ensembl ENCODE 0.3 +33.3 33253 2.0 ZFHX2 JUND GLIS1 TEAD4 ZBTB33 ZNF600 ZIC2 LOC101929147 RBMX2P3 WARS2-IT1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around WARS2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for WARS2-IT1 Gene

119,047,405 bp from pter
119,064,785 bp from pter
17,381 bases
Plus strand

Genomic View for WARS2-IT1 Gene

Genes around WARS2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WARS2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WARS2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WARS2-IT1 Gene

Proteins for WARS2-IT1 Gene

Post-translational modifications for WARS2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WARS2-IT1 Gene

Domains & Families for WARS2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WARS2-IT1 Gene

Function for WARS2-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WARS2-IT1 Gene

Localization for WARS2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for WARS2-IT1 Gene

Pathways & Interactions for WARS2-IT1 Gene

SuperPathways for WARS2-IT1 Gene

No Data Available

Interacting Proteins for WARS2-IT1 Gene

Gene Ontology (GO) - Biological Process for WARS2-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for WARS2-IT1 Gene

Transcripts for WARS2-IT1 Gene

mRNA/cDNA for WARS2-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for WARS2-IT1 Gene

No ASD Table

Relevant External Links for WARS2-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for WARS2-IT1 Gene

mRNA expression in normal human tissues for WARS2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for WARS2-IT1 Gene

This gene is overexpressed in Heart - Atrial Appendage (x7.9).
genes like me logo Genes that share expression patterns with WARS2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for WARS2-IT1 Gene

Orthologs for WARS2-IT1 Gene

Evolution for WARS2-IT1 Gene

Gene Tree for WARS2-IT1 (if available)
Gene Tree for WARS2-IT1 (if available)

No data available for Orthologs for WARS2-IT1 Gene

Paralogs for WARS2-IT1 Gene

No data available for Paralogs for WARS2-IT1 Gene

Variants for WARS2-IT1 Gene

Sequence variations from dbSNP and Humsavar for WARS2-IT1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10802073 -- 119,062,032(+) CTATA(C/T)ATGAA intron-variant
rs10923738 -- 119,052,040(+) AAGGC(A/G)TAAGT intron-variant
rs10923739 -- 119,056,210(+) ttttg(G/T)aattt intron-variant
rs10923740 -- 119,057,664(+) aggtg(C/T)ctgta intron-variant
rs10923741 -- 119,061,850(+) GATAA(A/T)ACAGT intron-variant

Relevant External Links for WARS2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for WARS2-IT1 Gene

Disorders for WARS2-IT1 Gene

Relevant External Links for WARS2-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for WARS2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WARS2-IT1 Gene

Publications for WARS2-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for WARS2-IT1 Gene

Sources for WARS2-IT1 Gene

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