Free for academic non-profit institutions. Other users need a Commercial license

Aliases for WARS2-IT1 Gene

Subcategory (RNA class) for WARS2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for WARS2-IT1 Gene

  • WARS2 Intronic Transcript 1 2 3 5
  • WARS2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for WARS2-IT1 Gene

Previous GeneCards Identifiers for WARS2-IT1 Gene

  • GC00U933489
  • GC01M119591
  • GC01P119590

Summaries for WARS2-IT1 Gene

GeneCards Summary for WARS2-IT1 Gene

WARS2-IT1 (WARS2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for WARS2-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WARS2-IT1 Gene

Genomics for WARS2-IT1 Gene

GeneHancer (GH) Regulatory Elements for WARS2-IT1 Gene

Promoters and enhancers for WARS2-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I119046 Enhancer 0.5 Ensembl ENCODE 550.8 -0.3 -261 1.5 MEIS2 WARS2-IT1 WARS2 PIR51925 GC01P118983
GH01I119079 Enhancer 0.7 Ensembl ENCODE 0.3 +33.2 33189 1.9 ZFHX2 JUND ZNF189 GLIS1 EBF1 ZNF600 ZIC2 RBMX2P3 WARS2-IT1 WARS2 GC01P118983
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around WARS2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for WARS2-IT1 Gene

Genomic Locations for WARS2-IT1 Gene
chr1:119,047,405-119,064,785
(GRCh38/hg38)
Size:
17,381 bases
Orientation:
Plus strand
chr1:119,590,028-119,607,408
(GRCh37/hg19)

Genomic View for WARS2-IT1 Gene

Genes around WARS2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WARS2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WARS2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WARS2-IT1 Gene

Proteins for WARS2-IT1 Gene

Post-translational modifications for WARS2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WARS2-IT1 Gene

Domains & Families for WARS2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WARS2-IT1 Gene

Function for WARS2-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WARS2-IT1 Gene

Localization for WARS2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WARS2-IT1 Gene

Pathways & Interactions for WARS2-IT1 Gene

SuperPathways for WARS2-IT1 Gene

No Data Available

Interacting Proteins for WARS2-IT1 Gene

Gene Ontology (GO) - Biological Process for WARS2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WARS2-IT1 Gene

Drugs & Compounds for WARS2-IT1 Gene

No Compound Related Data Available

Transcripts for WARS2-IT1 Gene

mRNA/cDNA for WARS2-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for WARS2-IT1 Gene

No ASD Table

Relevant External Links for WARS2-IT1 Gene

GeneLoc Exon Structure for
WARS2-IT1
ECgene alternative splicing isoforms for
WARS2-IT1

Expression for WARS2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WARS2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for WARS2-IT1 Gene

This gene is overexpressed in Heart - Atrial Appendage (x7.9).
genes like me logo Genes that share expression patterns with WARS2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WARS2-IT1 Gene

Orthologs for WARS2-IT1 Gene

Evolution for WARS2-IT1 Gene

ENSEMBL:
Gene Tree for WARS2-IT1 (if available)
TreeFam:
Gene Tree for WARS2-IT1 (if available)

No data available for Orthologs for WARS2-IT1 Gene

Paralogs for WARS2-IT1 Gene

No data available for Paralogs for WARS2-IT1 Gene

Variants for WARS2-IT1 Gene

Sequence variations from dbSNP and Humsavar for WARS2-IT1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000364822 -- 119,062,363(+) T/C intron_variant
rs1000453815 -- 119,052,448(+) G/T intron_variant
rs1000715464 -- 119,063,674(+) T/C downstream_transcript_variant
rs1000786869 -- 119,051,128(+) C/A intron_variant
rs1000990531 -- 119,057,116(+) G/T intron_variant

Additional Variant Information for WARS2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WARS2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for WARS2-IT1 Gene

Disorders for WARS2-IT1 Gene

Additional Disease Information for WARS2-IT1

No disorders were found for WARS2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WARS2-IT1 Gene

Publications for WARS2-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for WARS2-IT1 Gene

Sources for WARS2-IT1 Gene

Content
Loading form....