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Aliases for WARS2-IT1 Gene

Subcategory (RNA class) for WARS2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for WARS2-IT1 Gene

  • WARS2 Intronic Transcript 1 2 3 5
  • WARS2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for WARS2-IT1 Gene

Previous GeneCards Identifiers for WARS2-IT1 Gene

  • GC00U933489
  • GC01M119591
  • GC01P119590

Summaries for WARS2-IT1 Gene

GeneCards Summary for WARS2-IT1 Gene

WARS2-IT1 (WARS2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for WARS2-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WARS2-IT1 Gene

Genomics for WARS2-IT1 Gene

Regulatory Elements for WARS2-IT1 Gene

Enhancers for WARS2-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H119046 0.5 Ensembl ENCODE 0.7 -0.3 -262 1 WARS2 WARS2-IT1 PIR51925
GH01H119079 0.8 Ensembl ENCODE 0.3 +33.2 33190 1 ZFHX2 JUND GLIS1 ZNF600 EBF1 ZIC2 RBMX2P3 WARS2-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WARS2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for WARS2-IT1 Gene

Chromosome:
1
Start:
119,047,405 bp from pter
End:
119,064,785 bp from pter
Size:
17,381 bases
Orientation:
Plus strand

Genomic View for WARS2-IT1 Gene

Genes around WARS2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WARS2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WARS2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WARS2-IT1 Gene

Proteins for WARS2-IT1 Gene

Post-translational modifications for WARS2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WARS2-IT1 Gene

Domains & Families for WARS2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WARS2-IT1 Gene

Function for WARS2-IT1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for WARS2-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WARS2-IT1 Gene

Localization for WARS2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WARS2-IT1 Gene

Pathways & Interactions for WARS2-IT1 Gene

SuperPathways for WARS2-IT1 Gene

No Data Available

Interacting Proteins for WARS2-IT1 Gene

Gene Ontology (GO) - Biological Process for WARS2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WARS2-IT1 Gene

Drugs & Compounds for WARS2-IT1 Gene

No Compound Related Data Available

Transcripts for WARS2-IT1 Gene

mRNA/cDNA for WARS2-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for WARS2-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for WARS2-IT1 Gene

No ASD Table

Relevant External Links for WARS2-IT1 Gene

GeneLoc Exon Structure for
WARS2-IT1
ECgene alternative splicing isoforms for
WARS2-IT1

Expression for WARS2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WARS2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for WARS2-IT1 Gene

This gene is overexpressed in Heart - Atrial Appendage (x7.9).
genes like me logo Genes that share expression patterns with WARS2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WARS2-IT1 Gene

Orthologs for WARS2-IT1 Gene

Evolution for WARS2-IT1 Gene

ENSEMBL:
Gene Tree for WARS2-IT1 (if available)
TreeFam:
Gene Tree for WARS2-IT1 (if available)

No data available for Orthologs for WARS2-IT1 Gene

Paralogs for WARS2-IT1 Gene

No data available for Paralogs for WARS2-IT1 Gene

Variants for WARS2-IT1 Gene

Sequence variations from dbSNP and Humsavar for WARS2-IT1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000364822 -- 119,062,363(+) AAAGA(C/T)AGCAT intron-variant
rs1000453815 -- 119,052,448(+) CTGGG(G/T)TTCTG intron-variant
rs1000715464 -- 119,063,674(+) AGAGC(C/T)CGGGC intron-variant, downstream-variant-500B
rs1000786869 -- 119,051,128(+) TATCA(A/C)CCAGG intron-variant
rs1000990531 -- 119,057,116(+) ATGTT(G/T)AACTT intron-variant

Relevant External Links for WARS2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WARS2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for WARS2-IT1 Gene

Disorders for WARS2-IT1 Gene

Relevant External Links for WARS2-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WARS2-IT1

No disorders were found for WARS2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WARS2-IT1 Gene

Publications for WARS2-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for WARS2-IT1 Gene

Sources for WARS2-IT1 Gene

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