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Aliases for WARS2 Gene

Aliases for WARS2 Gene

  • Tryptophanyl TRNA Synthetase 2, Mitochondrial 2 3
  • EC 6.1.1.2 4 64
  • (Mt)TrpRS 3 4
  • TrpRS 3 4
  • Tryptophanyl-TRNA Synthetase, Mitochondrial 3
  • Tryptophan TRNA Ligase 2, Mitochondrial 3
  • Tryptophan--TRNA Ligase, Mitochondrial 3
  • Tryptophanyl-TRNA Synthetase 4
  • Tryptophan TRNA Ligase 2 2
  • Tryptophan-TRNA Ligase 3
  • Mitochondrial 2
  • EC 6.1.1 64

External Ids for WARS2 Gene

Summaries for WARS2 Gene

Entrez Gene Summary for WARS2 Gene

  • Aminoacyl-tRNA synthetases catalyze the aminoacylation of tRNA by their cognate amino acid. Because of their central role in linking amino acids with nucleotide triplets contained in tRNAs, aminoacyl-tRNA synthetases are thought to be among the first proteins that appeared in evolution. Two forms of tryptophanyl-tRNA synthetase exist, a cytoplasmic form, named WARS, and a mitochondrial form, named WARS2. This gene encodes the mitochondrial tryptophanyl-tRNA synthetase. Two alternative transcripts encoding different isoforms have been described. [provided by RefSeq, Jul 2008]

GeneCards Summary for WARS2 Gene

WARS2 (Tryptophanyl TRNA Synthetase 2, Mitochondrial) is a Protein Coding gene. Among its related pathways are Gene Expression and tRNA Aminoacylation. GO annotations related to this gene include tryptophan-tRNA ligase activity.

Gene Wiki entry for WARS2 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WARS2 Gene

Genomics for WARS2 Gene

Genomic Location for WARS2 Gene

Start:
119,031,216 bp from pter
End:
119,140,788 bp from pter
Size:
109,573 bases
Orientation:
Minus strand

Genomic View for WARS2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for WARS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WARS2 Gene

Regulatory Elements for WARS2 Gene

Proteins for WARS2 Gene

  • Protein details for WARS2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UGM6-SYWM_HUMAN
    Recommended name:
    Tryptophan--tRNA ligase, mitochondrial
    Protein Accession:
    Q9UGM6
    Secondary Accessions:
    • B1ALR1
    • B2R9D4
    • Q53FT4
    • Q5VUD2
    • Q86TQ0

    Protein attributes for WARS2 Gene

    Size:
    360 amino acids
    Molecular mass:
    40147 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for WARS2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for WARS2 Gene

Proteomics data for WARS2 Gene at MOPED

Selected DME Specific Peptides for WARS2 Gene

Post-translational modifications for WARS2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for WARS2 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

Domains for WARS2 Gene

Gene Families for WARS2 Gene

HGNC:
  • aaRS1 :Aminoacyl tRNA synthetases / Class I

UniProtKB/Swiss-Prot:

SYWM_HUMAN
Family:
  • Belongs to the class-I aminoacyl-tRNA synthetase family.:
    • Q9UGM6
genes like me logo Genes that share domains with WARS2: view

Function for WARS2 Gene

Molecular function for WARS2 Gene

GENATLAS Biochemistry: tryptophanyl-tRNA synthetase 2,mitochondrial
UniProtKB/Swiss-Prot CatalyticActivity: ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophyl-tRNA(Trp)

Enzyme Numbers (IUBMB) for WARS2 Gene

Gene Ontology (GO) - Molecular Function for WARS2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding --
GO:0004812 aminoacyl-tRNA ligase activity --
GO:0004830 tryptophan-tRNA ligase activity IEA --
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with WARS2: view

miRNA for WARS2 Gene

miRTarBase miRNAs that target WARS2

No data available for Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for WARS2 Gene

Localization for WARS2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for WARS2 Gene

Mitochondrion matrix.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for WARS2 Gene COMPARTMENTS Subcellular localization image for WARS2 gene
Compartment Confidence
mitochondrion 5

Gene Ontology (GO) - Cellular Components for WARS2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm --
GO:0005739 mitochondrion --
GO:0005759 mitochondrial matrix TAS --
genes like me logo Genes that share ontologies with WARS2: view

Pathways for WARS2 Gene

genes like me logo Genes that share pathways with WARS2: view

Pathways by source for WARS2 Gene

1 KEGG pathway for WARS2 Gene

Interacting Proteins for WARS2 Gene

Gene Ontology (GO) - Biological Process for WARS2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001570 vasculogenesis IEA --
GO:0006418 tRNA aminoacylation for protein translation TAS --
GO:0006436 tryptophanyl-tRNA aminoacylation IEA --
GO:0010467 gene expression TAS --
genes like me logo Genes that share ontologies with WARS2: view

Compounds for WARS2 Gene

(5) HMDB Compounds for WARS2 Gene

Compound Synonyms Cas Number PubMed IDs
Adenosine monophosphate
  • 5'-AMP
61-19-8
Adenosine triphosphate
  • 5'-(tetrahydrogen triphosphate) Adenosine
56-65-5
L-Tryptophan
  • (-)-tryptophan
73-22-3
Phosphoric acid
  • acide phosphorique (FRENCH)
7664-38-2
Pyrophosphate
  • (4-)Diphosphoric acid ion
14000-31-8

(2) Drugbank Compounds for WARS2 Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
L-Tryptophan
  • (-)-Tryptophan
73-22-3 target inhibitor
L-Tryptophan
  • (-)-Tryptophan
73-22-3 enzyme substrate inhibitor

(4) Novoseek inferred chemical compound relationships for WARS2 Gene

Compound -log(P) Hits PubMed IDs
trna(trp) 89.3 3
aminoacyl-trna 75.4 3
trna 55.9 3
atp 15.8 2
genes like me logo Genes that share compounds with WARS2: view

Transcripts for WARS2 Gene

Unigene Clusters for WARS2 Gene

Tryptophanyl tRNA synthetase 2, mitochondrial:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for WARS2 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b
SP1: -
SP2: - - -
SP3:

Relevant External Links for WARS2 Gene

GeneLoc Exon Structure for
WARS2
ECgene alternative splicing isoforms for
WARS2

Expression for WARS2 Gene

mRNA expression in normal human tissues for WARS2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for WARS2 Gene

SOURCE GeneReport for Unigene cluster for WARS2 Gene Hs.523506

genes like me logo Genes that share expressions with WARS2: view

Orthologs for WARS2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for WARS2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia WARS2 36
  • 99.44 (n)
  • 100 (a)
WARS2 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia WARS2 36
  • 88.43 (n)
  • 89.44 (a)
WARS2 37
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia WARS2 36
  • 85.09 (n)
  • 86.94 (a)
WARS2 37
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Wars2 36
  • 85.37 (n)
  • 86.39 (a)
Wars2 16
Wars2 37
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia WARS2 37
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia WARS2 37
  • 70 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Wars2 36
  • 84.63 (n)
  • 84.17 (a)
chicken
(Gallus gallus)
Aves WARS2 36
  • 67.72 (n)
  • 67.46 (a)
WARS2 37
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia WARS2 37
  • 69 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.6583 36
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.6744 36
wars2 36
  • 65.45 (n)
  • 67.78 (a)
zebrafish
(Danio rerio)
Actinopterygii wars2 36
  • 61.63 (n)
  • 63.66 (a)
wars2 37
  • 60 (a)
OneToOne
wufb77g08 36
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP011744 36
  • 55.2 (n)
  • 49.1 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG7441 36
  • 55.14 (n)
  • 52.78 (a)
CG7441 37
  • 27 (a)
OneToOne
CG7441 38
  • 52 (a)
worm
(Caenorhabditis elegans)
Secernentea prx-10 36
  • 48.65 (n)
  • 44.06 (a)
prx-10 37
  • 39 (a)
OneToOne
wrs-2 38
  • 42 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ACR089C 36
  • 50.88 (n)
  • 44.58 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MSW1 36
  • 48.93 (n)
  • 43.73 (a)
MSW1 37
  • 38 (a)
OneToOne
MSW1 39
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E21825g 36
  • 51.95 (n)
  • 45.37 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons OVA4 36
  • 49.95 (n)
  • 40.92 (a)
rice
(Oryza sativa)
Liliopsida Os01g0743400 36
  • 48.31 (n)
  • 41.16 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes msw1 36
  • 47.63 (n)
  • 41.67 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6568 37
  • 42 (a)
OneToOne
Species with no ortholog for WARS2:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for WARS2 Gene

ENSEMBL:
Gene Tree for WARS2 (if available)
TreeFam:
Gene Tree for WARS2 (if available)

Paralogs for WARS2 Gene

Pseudogenes.org Pseudogenes for WARS2 Gene

genes like me logo Genes that share paralogs with WARS2: view

No data available for Paralogs for WARS2 Gene

Variants for WARS2 Gene

Sequence variations from dbSNP and Humsavar for WARS2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs8928 -- 119,031,451(-) ACGCC(C/G)CATCC utr-variant-3-prime
rs12086 -- 119,031,237(+) ACCTT(C/T)AGTTT utr-variant-3-prime
rs717363 -- 119,041,377(-) GGCTT(C/T)TGATT intron-variant
rs878006 -- 119,040,799(-) TTGAC(C/T)TTCTC intron-variant
rs1057990 -- 119,032,609(-) GAGTA(A/G)TTTGG utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for WARS2 Gene

Variant ID Type Subtype PubMed ID
nsv524681 CNV Gain 19592680
dgv16n21 CNV Loss 19592680
esv2475310 CNV Deletion 19546169
nsv521813 CNV Loss 19592680
nsv831192 CNV Gain 17160897

Relevant External Links for WARS2 Gene

HapMap Linkage Disequilibrium report
WARS2

Disorders for WARS2 Gene

Relevant External Links for WARS2

Genetic Association Database (GAD)
WARS2
Human Genome Epidemiology (HuGE) Navigator
WARS2
genes like me logo Genes that share disorders with WARS2: view

No data available for UniProtKB/Swiss-Prot for WARS2 Gene

Publications for WARS2 Gene

  1. Identification and characterization of human mitochondrial tryptophanyl-tRNA synthetase. (PMID: 10828066) Jorgensen R. … Justesen J. (J. Biol. Chem. 2000) 2 3 4 23
  2. Assignment of the human mitochondrial tryptophanyl-tRNA synthetase (WARS2) to 1p13.3-->p13.1 by radiation hybrid mapping. (PMID: 10072595) Martinez-Dominguez M.T. … Hansen L.L. (Cytogenet. Cell Genet. 1998) 2 3 23
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 49
  5. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4

Products for WARS2 Gene

Sources for WARS2 Gene

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