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Aliases & Descriptions for WARS
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 6.1.1.2 3 GAMMA-2 2 IFI53 2 , 3 IFP53 1 , 2 , 3 TrpRS 3 WRS 3 hWRS 3
Descriptions Interferon-induced protein 53 2 , 3 Tryptophan--tRNA ligase 3 tryptophan tRNA ligase 1, cytoplasmic 2 tryptophanyl-tRNA synthetase 2
Search outside databases for aliases for WARS genePrevious GC identifers: GC14M098311 GC14M094615 GC14M098790
Summaries for WARS (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for WARS : Aminoacyl-tRNA synthetases catalyze the aminoacylation of tRNA by their cognate amino acid. Becauseof their central role in linking amino acids with nucleotide triplets contained in tRNAs,aminoacyl-tRNA synthetases are thought to be among the first proteins that appeared in evolution.Two forms of tryptophanyl-tRNA synthetase exist, a cytoplasmic form, named WARS, and amitochondrial form, named WARS2. Tryptophanyl-tRNA synthetase (WARS) catalyzes the aminoacylationof tRNA(trp) with tryptophan and is induced by interferon. Tryptophanyl-tRNA synthetase belongs tothe class I tRNA synthetase family. Four transcript variants encoding two different isoforms havebeen found for this gene. [provided by RefSeq] Gene Wiki entry for WARS
Genomic Location for WARS
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the WARS gene Entrez Gene cytogenetic band: 14q32.31 Ensembl cytogenetic band: 14q32.2 HGNC cytogenetic band: 14q32.2 WARS Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14M099869:
(about GC identifiers )
Start:
99,869,878 bp from pter
End:
99,912,433 bp from pter
Size:
42,556 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000014.7 NT_026437.11 Proteins for WARS
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: SYWC_HUMAN, P23381 (See
protein sequence )Recommended Name: Tryptophanyl-tRNA synthetase, cytoplasmic Size : 471 amino acids; 53165 Da
Subunit : Homodimer
Subcellular location : Cytoplasm
PDB structures from and Proteopedia : 1O5T (3D)
 1R6T (3D)
 1R6U (3D)
 1ULH (3D)
 2AKE (3D)
 2AZX (3D)
 2DR2 (3D)
 2QUH (3D)
 2QUI (3D)
 2QUJ (3D)
 2QUK (3D)
 
Secondary accessions : P78535 Q9UDL3
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (4 alternative transcripts):
NP_004175.2 NP_776049.1 NP_998810.1 NP_998811.1 ENSEMBL proteins: ENSP00000339485 ENSP00000351481 ENSP00000347495 ENSP00000376620 ENSP00000376618 Human Recombinant Proteins                OriGene Purified Recombinant Human Proteins (see all 2 ): WARS 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for WARS: Assays for WARS:
Protein
Domains/ Families for WARS(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P23381 ProtoNet protein and cluster: P23381
2 Blocks protein families : IPB000738 WHEP-TRS domain IPB002305 Aminoacyl-tRNA synthetase UniProtKB/Swiss-Prot: SYWC_HUMAN, P23381 Similarity : Belongs to the class-I aminoacyl-tRNA synthetase familySimilarity : Contains 1 WHEP-TRS domain
Gene Function for WARS
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_004184 Applied Biosystems Silencer ® siRNAs for WARS Sigma-Aldrich siRNA and siRNA Panels for WARS Sigma-Aldrich shRNA for WARS Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_004184                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_004184                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_004184  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004184 UniProtKB/Swiss-Prot: SYWC_HUMAN, P23381 Catalytic activity : ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophyl-tRNA(Trp)Induction : By interferon gammaEnzyme Number (IUBMB): EC 6.1.1.2
4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for WARS
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for WARS (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for WARS 5/23 Interacting proteins for WARS (ENSP00000347495 3 ) via UniProtKB, MINT, and/or STRING (see all 23
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for WARS (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for WARS 9 Novoseek chemical compound relationships for WARS gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
trna(trp)
89.54
19
11834741 (6), 7743129 (1), 11600701 (1), 8646895 (1) (see all 5 )
aminoacyl-trna
86.41
2
8643392 (1), 12438642 (1)
indoleamine
77.73
8
1398953 (2), 7665918 (1), 9731757 (1), 15961579 (1) (see all 7 )
trna
72.73
34
17726052 (3), 7743129 (2), 16798914 (2), 14660560 (1) (see all 14 )
anticodon
69.88
2
15130561 (1), 17386262 (1)
kynurenine
56.95
1
15961579 (1)
tryptamine
45.59
4
10376788 (1), 17114825 (1)
atp
34.44
19
12473451 (7), 7729548 (1), 7743129 (1), 16888724 (1) (see all 5 )
phosphatidylinositol
0.00
2
12644569 (1), 17661345 (1)
About this table
Transcripts for WARS(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_004184 Sigma-Aldrich siRNA and siRNA Panels for WARS Sigma-Aldrich shRNA for WARS Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_004184 NM_173701 NM_213645 NM_213646
REFSEQ mRNAs for WARS gene (4 alternative transcripts): NM_004184.3 NM_173701.1 NM_213645.1 NM_213646.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004184 NM_173701 NM_213645 NM_213646
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_004184                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_004184                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_004184  
Additional cDNA sequence: AK025487.1 AK056100.1 AK124668.1 AK130698.1 AK291141.1 AK300255.1 BC017489.1 BC095453.1 BX248006.1 CR590717.1 CR592442.1 CR592745.1 CR593130.1 CR593984.1 CR594500.1 CR595301.1 CR596121.1 CR598767.1 CR599251.1 CR601972.1 CR602143.1 CR603505.1 CR604373.1 CR604691.1 CR608018.1 CR608934.1 CR611480.1 CR612095.1 CR616378.1 CR620683.1 CR623856.1 CR623966.1 CR626567.1 CR626779.1 CR626840.1 M61715.1 M77804.1 X59892.1 X62570.1
24/82 DOTS entries (see all 82
): DT.97856550 DT.97782840 DT.454214 DT.102838655 DT.95281872 DT.95304824 DT.100708270 DT.100708291 DT.100708249 DT.100708253 DT.100708272 DT.92461503 DT.100645536 DT.450366 DT.100708294 DT.100801587 DT.100708265 DT.120758993 DT.95184645 DT.100000216 DT.100708251 DT.120758969 DT.100850845 DT.95304968
24/1051 AceView cDNA sequences (see all 1051
):CF142057 CR626779 BQ028342 CA443826 NM_213646 AA380991 BX325916 AI808960 AA513432 AI720224 BM800906 CR593130 AW407600 CR604373 AI359636 CN483262 BU167521 BM313841 CR623856 AU138720 BU687015 BG231757 AA431136 BM782536
highest scoring ESTs for WARS :AA380997 AK056100 AU099089 AU121240 AU127171 AU131990 AW408616 AW957672 BE018707 BE727734
Unigene Cluster for WARS: Tryptophanyl-tRNA synthetase Hs.497599 [show with all ESTs ] Unigene Representative Sequence: NM_004184 GeneLoc Exon Structure 5/20 Alternative Splicing Database (ASD) splice patterns (SP) for WARS (see all 20
) ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c · 2d · 2e · 2f ^ 3a · 3b · 3c · 3d ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10a · 10b · 10c · 10d ^ SP1 :                           -       -                     SP2 :                           -   -   -   -                     SP3 :       -   -   -   -   -   -   -   -   -   -   -   -   -   -                     SP4 :                           -   -   -   -                   -   SP5 :       -   -   -   -   -   -   -   -   -   -   -   -     -                    
ExUns: 11a · 11b ^ 12a · 12b · 12c ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17a · 17b SP1 :     -                     SP2 :     -                     SP3 :     -                     SP4 : -     -                     SP5 :                        
About this scheme ECgene alternative splicing isoforms for WARS 5 Ensembl transcripts including schematic representations : ENST00000344102
ENST00000358655
ENST00000355338
ENST00000392882
ENST00000392880
Expression for WARS
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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WARS expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for WARS 1 / 2 / 3
5 probe-sets matching WARS gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGCAGGCCTGSOURCE GeneReport for Unigene cluster: Hs.497599 Expression variation in blood from EXPOLDB for WARS
Orthologs for WARS
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for WARS gene from 5/26 species (see all 26
)
About this table Species with no ortholog for WARS ENSEMBL Gene Tree for WARS Paralogs for WARS (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for WARS (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for WARS (up to first 250kb)
Disorders & Mutations for WARS
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 191050 4 Novoseek disease relationships for WARS gene
About this table Genetic Association Database: WARS Human Genome Epidemiology Navigator: WARS (2 documents)
Medical News for WARS (Possibly Related Articles in
Doctor's Guide )
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Publications for WARS (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/121 PubMed articles for WARS gene (see all 121
): Human interferon gamma potently induces the synthesis of a 55-kDa protein (gamma 2) highly homologous to rabbit peptide chain release factor and bovine tryptophanyl-tRNA synthetase. (PubMed id 1763065) 1, 2, 3, 4 Fleckner J....Justesen J. (1991) Molecular cloning and characterization of an interferon induced human cDNA with sequence homology to a mammalian peptide chain release factor. (PubMed id 1537332) 2, 3, 4 Buwitt U.... Boettger E.C. (1992) The human gene encoding tryptophanyl-tRNA synthetase: interferon- response elements and exon-intron organization. (PubMed id 7685728) 1, 3, 4 Frolova L.Y.... Kisselev L.L. (1993) Cloning and nucleotide sequence of the structural gene encoding for human tryptophanyl-tRNA synthetase. (PubMed id 1765274) 1, 3, 4 Frolova L.Y....Kisselev L.L. (1991) Tryptophanyl-tRNA synthetase gene polymorphisms and risk of incident myocardial infarction. (PubMed id 15939065) 1, 3, 6 Zee R.Y....Ridker P.M. (2005) Interferon induces tryptophanyl-tRNA synthetase expression in human fibroblasts. (PubMed id 1761529) 1, 3, 4 Rubin B.Y.... Tate W.P. (1991) Crystal structures that suggest late development of genetic code components for differentiating aromatic side chains. (PubMed id 14671330) 1, 3, 4 Yang X.-L....Ribas de Pouplana L. (2003) Crystal structure of human tryptophanyl-tRNA synthetase catalytic fragment: insights into substrate recognition, tRNA binding, and angiogenesis activity. (PubMed id 14660560) 1, 3, 4 Yu Y....Ding J. (2004) Global phosphoproteome of HT-29 human colon adenocarcinoma cells. (PubMed id 16083285) 3, 4 Kim J.-E.... White F.M. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004)
Search for WARS
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Genome Databases showing WARS
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing WARS
(According to HUGE )
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Specialized Databases showing WARS (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for WARS (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for WARS:
Search Tocris compounds for WARS
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009