Free for academic non-profit institutions. Other users need a Commercial license

Aliases for WAC-AS1 Gene

Subcategory (RNA class) for WAC-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for WAC-AS1 Gene

  • WAC Antisense RNA 1 (Head To Head) 2 3 5

External Ids for WAC-AS1 Gene

Previous GeneCards Identifiers for WAC-AS1 Gene

  • GC10M028808

Summaries for WAC-AS1 Gene

GeneCards Summary for WAC-AS1 Gene

WAC-AS1 (WAC Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for WAC-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WAC-AS1 Gene

Genomics for WAC-AS1 Gene

Regulatory Elements for WAC-AS1 Gene

Enhancers for WAC-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H028531 1.4 ENCODE dbSUPER 45.8 -0.5 -464 4 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 WAC-AS1 WAC BAMBI PIR60646
GH10H028558 1.1 Ensembl ENCODE dbSUPER 51.8 -26.9 -26915 1.8 ZNF843 PRDM6 IKZF1 ZSCAN5C ETV6 WT1 SP7 EZH2 ZXDB WAC-AS1 WAC PIR60646
GH10H028592 1.1 ENCODE dbSUPER 51.4 -60.3 -60260 0.9 HDAC1 FOXA2 ZNF366 RCOR1 ATF7 FOS ZNF362 CEBPB TSHZ1 ZEB2 WAC-AS1 WAC PIR60646
GH10H028502 0.9 Ensembl ENCODE 54.2 +30.2 30217 0.8 HDAC1 CTCF ATF1 L3MBTL2 MNT ZNF592 GATA3 POLR2A SMARCA4 IKZF1 WAC-AS1 WAC GC10P028507 LOC105376468
GH10H028628 1.1 Ensembl ENCODE 40 -95.8 -95779 0.8 PKNOX1 RAD21 RFX5 ZSCAN5C ZNF143 FOS RUNX3 CREM ZNF654 CEBPB WAC-AS1 GC10M028624 TPRKBP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WAC-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for WAC-AS1 Gene

Genomic Locations for WAC-AS1 Gene
chr10:28,519,917-28,532,743
(GRCh38/hg38)
Size:
12,827 bases
Orientation:
Minus strand
chr10:28,808,846-28,821,672
(GRCh37/hg19)

Genomic View for WAC-AS1 Gene

Genes around WAC-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WAC-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WAC-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WAC-AS1 Gene

Proteins for WAC-AS1 Gene

Post-translational modifications for WAC-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WAC-AS1 Gene

Domains & Families for WAC-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WAC-AS1 Gene

Function for WAC-AS1 Gene

Phenotypes From GWAS Catalog for WAC-AS1 Gene

Phenotypes for WAC-AS1 Gene

GenomeRNAi human phenotypes for WAC-AS1:
genes like me logo Genes that share phenotypes with WAC-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WAC-AS1 Gene

Localization for WAC-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WAC-AS1 Gene

Pathways & Interactions for WAC-AS1 Gene

SuperPathways for WAC-AS1 Gene

No Data Available

Interacting Proteins for WAC-AS1 Gene

Gene Ontology (GO) - Biological Process for WAC-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WAC-AS1 Gene

Drugs & Compounds for WAC-AS1 Gene

No Compound Related Data Available

Transcripts for WAC-AS1 Gene

mRNA/cDNA for WAC-AS1 Gene

Unigene Clusters for WAC-AS1 Gene

WAC antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for WAC-AS1 Gene

No ASD Table

Relevant External Links for WAC-AS1 Gene

GeneLoc Exon Structure for
WAC-AS1
ECgene alternative splicing isoforms for
WAC-AS1

Expression for WAC-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WAC-AS1 Gene

SOURCE GeneReport for Unigene cluster for WAC-AS1 Gene:

Hs.403253
genes like me logo Genes that share expression patterns with WAC-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WAC-AS1 Gene

Orthologs for WAC-AS1 Gene

Evolution for WAC-AS1 Gene

ENSEMBL:
Gene Tree for WAC-AS1 (if available)
TreeFam:
Gene Tree for WAC-AS1 (if available)

No data available for Orthologs for WAC-AS1 Gene

Paralogs for WAC-AS1 Gene

No data available for Paralogs for WAC-AS1 Gene

Variants for WAC-AS1 Gene

Sequence variations from dbSNP and Humsavar for WAC-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000005472 -- 28,519,761(+) GAAAC(C/T)CCATC downstream-variant-500B
rs1000016990 -- 28,524,244(+) CTAGC(A/G)TATCT nc-transcript-variant
rs1000093984 -- 28,519,772(+) CAAAA(-/T)AAAAA downstream-variant-500B
rs1000146258 -- 28,519,503(+) CGGTG(C/G)CTCAG downstream-variant-500B
rs1000509689 -- 28,529,156(+) AAGGG(A/G)GAAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for WAC-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2734606 CNV deletion 23290073
nsv947797 CNV duplication 23825009

Relevant External Links for WAC-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WAC-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WAC-AS1 Gene

Disorders for WAC-AS1 Gene

Relevant External Links for WAC-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WAC-AS1

No disorders were found for WAC-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WAC-AS1 Gene

Publications for WAC-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for WAC-AS1 Gene

Sources for WAC-AS1 Gene

Content
Loading form....