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Aliases for VWC2L-IT1 Gene

Subcategory (RNA class) for VWC2L-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VWC2L-IT1 Gene

  • VWC2L Intronic Transcript 1 2 3 5
  • VWC2L Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for VWC2L-IT1 Gene

Previous GeneCards Identifiers for VWC2L-IT1 Gene

  • GC00U933622
  • GC02P215375

Summaries for VWC2L-IT1 Gene

GeneCards Summary for VWC2L-IT1 Gene

VWC2L-IT1 (VWC2L Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VWC2L-IT1 Gene

Genomics for VWC2L-IT1 Gene

Regulatory Elements for VWC2L-IT1 Gene

Enhancers for VWC2L-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F214481 0.8 Ensembl ENCODE 0.3 -28.8 -28839 0.3 MEF2D PKNOX1 SMARCA4 TRIM28 VWC2L-IT1 VWC2L
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around VWC2L-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for VWC2L-IT1 Gene

Chromosome:
2
Start:
214,510,182 bp from pter
End:
214,536,890 bp from pter
Size:
26,709 bases
Orientation:
Plus strand

Genomic View for VWC2L-IT1 Gene

Genes around VWC2L-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VWC2L-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VWC2L-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VWC2L-IT1 Gene

Proteins for VWC2L-IT1 Gene

Post-translational modifications for VWC2L-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VWC2L-IT1 Gene

Domains & Families for VWC2L-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VWC2L-IT1 Gene

Function for VWC2L-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VWC2L-IT1 Gene

Localization for VWC2L-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VWC2L-IT1 Gene

Pathways & Interactions for VWC2L-IT1 Gene

SuperPathways for VWC2L-IT1 Gene

No Data Available

Interacting Proteins for VWC2L-IT1 Gene

Gene Ontology (GO) - Biological Process for VWC2L-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VWC2L-IT1 Gene

Transcripts for VWC2L-IT1 Gene

mRNA/cDNA for VWC2L-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VWC2L-IT1 Gene

VWC2L intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VWC2L-IT1 Gene

No ASD Table

Relevant External Links for VWC2L-IT1 Gene

GeneLoc Exon Structure for
VWC2L-IT1
ECgene alternative splicing isoforms for
VWC2L-IT1

Expression for VWC2L-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for VWC2L-IT1 Gene

SOURCE GeneReport for Unigene cluster for VWC2L-IT1 Gene:

Hs.665982
genes like me logo Genes that share expression patterns with VWC2L-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for VWC2L-IT1 Gene

Orthologs for VWC2L-IT1 Gene

Evolution for VWC2L-IT1 Gene

ENSEMBL:
Gene Tree for VWC2L-IT1 (if available)
TreeFam:
Gene Tree for VWC2L-IT1 (if available)

No data available for Orthologs for VWC2L-IT1 Gene

Paralogs for VWC2L-IT1 Gene

No data available for Paralogs for VWC2L-IT1 Gene

Variants for VWC2L-IT1 Gene

Sequence variations from dbSNP and Humsavar for VWC2L-IT1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10048690 -- 214,520,140(+) TGAGG(A/G)AAAAA intron-variant
rs10048756 -- 214,520,380(+) TTTTT(G/T)AATGT intron-variant
rs10048772 -- 214,518,121(+) AGATC(A/G)TGCCA intron-variant
rs10165712 -- 214,526,102(+) ATATT(A/C)ATCTA intron-variant
rs10170700 -- 214,511,921(+) ATATA(C/T)ACACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for VWC2L-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv1007833 CNV loss 25217958
esv3594261 CNV loss 21293372
esv3575332 CNV gain 25503493

Relevant External Links for VWC2L-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VWC2L-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VWC2L-IT1 Gene

Disorders for VWC2L-IT1 Gene

Relevant External Links for VWC2L-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VWC2L-IT1

No disorders were found for VWC2L-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VWC2L-IT1 Gene

Publications for VWC2L-IT1 Gene

No publications were found for VWC2L-IT1 Gene.

Products for VWC2L-IT1 Gene

Sources for VWC2L-IT1 Gene

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