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Aliases for VWC2L-IT1 Gene

Subcategory (RNA class) for VWC2L-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VWC2L-IT1 Gene

  • VWC2L Intronic Transcript 1 2 3 5
  • VWC2L Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for VWC2L-IT1 Gene

Previous GeneCards Identifiers for VWC2L-IT1 Gene

  • GC00U933622
  • GC02P215375

Summaries for VWC2L-IT1 Gene

GeneCards Summary for VWC2L-IT1 Gene

VWC2L-IT1 (VWC2L Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for VWC2L-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VWC2L-IT1 Gene

Genomics for VWC2L-IT1 Gene

GeneHancer (GH) Regulatory Elements for VWC2L-IT1 Gene

Promoters and enhancers for VWC2L-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I214481 Enhancer 0.5 ENCODE 0.3 -28.8 -28770 0.2 MEF2D PKNOX1 POLR2A ZNF83 TRIM28 VWC2L-IT1 VWC2L ENSG00000197585
GH02I214465 Enhancer 0.3 Ensembl 0.3 -44.5 -44481 0.2 CEBPG VWC2L-IT1 VWC2L ENSG00000197585
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around VWC2L-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for VWC2L-IT1 Gene

Genomic Locations for VWC2L-IT1 Gene
chr2:214,510,182-214,536,890
(GRCh38/hg38)
Size:
26,709 bases
Orientation:
Plus strand
chr2:215,374,920-215,401,614
(GRCh37/hg19)

Genomic View for VWC2L-IT1 Gene

Genes around VWC2L-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VWC2L-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VWC2L-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VWC2L-IT1 Gene

Proteins for VWC2L-IT1 Gene

Post-translational modifications for VWC2L-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VWC2L-IT1 Gene

Domains & Families for VWC2L-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VWC2L-IT1 Gene

Function for VWC2L-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VWC2L-IT1 Gene

Localization for VWC2L-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VWC2L-IT1 Gene

Pathways & Interactions for VWC2L-IT1 Gene

SuperPathways for VWC2L-IT1 Gene

No Data Available

Interacting Proteins for VWC2L-IT1 Gene

Gene Ontology (GO) - Biological Process for VWC2L-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VWC2L-IT1 Gene

Drugs & Compounds for VWC2L-IT1 Gene

No Compound Related Data Available

Transcripts for VWC2L-IT1 Gene

mRNA/cDNA for VWC2L-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VWC2L-IT1 Gene

VWC2L intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for VWC2L-IT1 Gene

No ASD Table

Relevant External Links for VWC2L-IT1 Gene

GeneLoc Exon Structure for
VWC2L-IT1
ECgene alternative splicing isoforms for
VWC2L-IT1

Expression for VWC2L-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VWC2L-IT1 Gene

SOURCE GeneReport for Unigene cluster for VWC2L-IT1 Gene:

Hs.665982
genes like me logo Genes that share expression patterns with VWC2L-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VWC2L-IT1 Gene

Orthologs for VWC2L-IT1 Gene

Evolution for VWC2L-IT1 Gene

ENSEMBL:
Gene Tree for VWC2L-IT1 (if available)
TreeFam:
Gene Tree for VWC2L-IT1 (if available)

No data available for Orthologs for VWC2L-IT1 Gene

Paralogs for VWC2L-IT1 Gene

No data available for Paralogs for VWC2L-IT1 Gene

Variants for VWC2L-IT1 Gene

Sequence variations from dbSNP and Humsavar for VWC2L-IT1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000262404 -- 214,521,058(+) C/T intron_variant
rs1000280362 -- 214,532,135(+) C/A intron_variant
rs1000414857 -- 214,515,707(+) C/A intron_variant
rs1000545058 -- 214,525,295(+) T/C non_coding_transcript_variant
rs1000593305 -- 214,520,018(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for VWC2L-IT1 Gene

Variant ID Type Subtype PubMed ID
esv3575332 CNV gain 25503493
esv3594261 CNV loss 21293372
nsv1007833 CNV loss 25217958

Additional Variant Information for VWC2L-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VWC2L-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VWC2L-IT1 Gene

Disorders for VWC2L-IT1 Gene

Additional Disease Information for VWC2L-IT1

No disorders were found for VWC2L-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VWC2L-IT1 Gene

Publications for VWC2L-IT1 Gene

No publications were found for VWC2L-IT1 Gene.

Products for VWC2L-IT1 Gene

Sources for VWC2L-IT1 Gene

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