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Aliases for VWA8-AS1 Gene

Subcategory (RNA class) for VWA8-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VWA8-AS1 Gene

  • VWA8 Antisense RNA 1 (Head To Head) 2 3 5
  • VWA8 Antisense RNA 1 (Non-Protein Coding) 2
  • VWA8 Antisense RNA 1 2

External Ids for VWA8-AS1 Gene

Previous GeneCards Identifiers for VWA8-AS1 Gene

  • GC13P042537

Summaries for VWA8-AS1 Gene

GeneCards Summary for VWA8-AS1 Gene

VWA8-AS1 (VWA8 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VWA8-AS1 Gene

Genomics for VWA8-AS1 Gene

Regulatory Elements for VWA8-AS1 Gene

Enhancers for VWA8-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F041958 0.7 Ensembl 0.8 +2.9 2893 0.2 MTA2 JUNB BMI1 TBX21 CBX5 IKZF1 EED NBN PRDM10 ETV6 MIR5006 VWA8 VWA8-AS1
GH13F041955 0.7 Ensembl 0.8 +0.1 79 0.6 HLF ZNF407 CEBPB EBF1 RAD21 ATF2 YY1 ATF3 CEBPA ZBTB33 VWA8 VWA8-AS1 MIR5006
GH13F041935 0.3 FANTOM5 0.3 -20.0 -20036 0.0 MIR5006 VWA8 KARSP1 VWA8-AS1
GH13F041928 0.2 Ensembl 0.3 -27.1 -27108 1.0 RNU6-74P MIR5006 VWA8 KARSP1 VWA8-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around VWA8-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for VWA8-AS1 Gene

Chromosome:
13
Start:
41,955,808 bp from pter
End:
41,981,565 bp from pter
Size:
25,758 bases
Orientation:
Plus strand

Genomic View for VWA8-AS1 Gene

Genes around VWA8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VWA8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VWA8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VWA8-AS1 Gene

Proteins for VWA8-AS1 Gene

Post-translational modifications for VWA8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VWA8-AS1 Gene

Domains & Families for VWA8-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VWA8-AS1 Gene

Function for VWA8-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VWA8-AS1 Gene

Localization for VWA8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VWA8-AS1 Gene

Pathways & Interactions for VWA8-AS1 Gene

SuperPathways for VWA8-AS1 Gene

No Data Available

Interacting Proteins for VWA8-AS1 Gene

Gene Ontology (GO) - Biological Process for VWA8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VWA8-AS1 Gene

Transcripts for VWA8-AS1 Gene

mRNA/cDNA for VWA8-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VWA8-AS1 Gene

VWA8 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VWA8-AS1 Gene

No ASD Table

Relevant External Links for VWA8-AS1 Gene

GeneLoc Exon Structure for
VWA8-AS1
ECgene alternative splicing isoforms for
VWA8-AS1

Expression for VWA8-AS1 Gene

SOURCE GeneReport for Unigene cluster for VWA8-AS1 Gene:

Hs.147766
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for VWA8-AS1 Gene

Orthologs for VWA8-AS1 Gene

Evolution for VWA8-AS1 Gene

ENSEMBL:
Gene Tree for VWA8-AS1 (if available)
TreeFam:
Gene Tree for VWA8-AS1 (if available)

No data available for Orthologs for VWA8-AS1 Gene

Paralogs for VWA8-AS1 Gene

No data available for Paralogs for VWA8-AS1 Gene

Variants for VWA8-AS1 Gene

Sequence variations from dbSNP and Humsavar for VWA8-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs111241770 -- 41,959,511(+) AAAAA(A/C)AAAAA intron-variant, upstream-variant-2KB
rs111442607 -- 41,962,413(+) ATGCT(C/T)TGAGG intron-variant, upstream-variant-2KB
rs112113512 -- 41,967,545(+) CACCA(C/T)ATATG intron-variant
rs112282427 -- 41,961,270(+) CCCGC(A/C)CCGCG nc-transcript-variant, upstream-variant-2KB
rs112325085 -- 41,960,836(+) ACAGG(A/G)GCGCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for VWA8-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv832588 CNV gain 17160897
nsv1038912 CNV gain 25217958
dgv75e55 CNV loss 17911159
dgv3127n54 CNV loss 21841781

Relevant External Links for VWA8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VWA8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VWA8-AS1 Gene

Disorders for VWA8-AS1 Gene

Relevant External Links for VWA8-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VWA8-AS1

No disorders were found for VWA8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VWA8-AS1 Gene

Publications for VWA8-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for VWA8-AS1 Gene

Sources for VWA8-AS1 Gene

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