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Aliases for VWA8-AS1 Gene

Subcategory (RNA class) for VWA8-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VWA8-AS1 Gene

  • VWA8 Antisense RNA 1 (Head To Head) 2 3 5
  • VWA8 Antisense RNA 1 (Non-Protein Coding) 2
  • VWA8 Antisense RNA 1 2

External Ids for VWA8-AS1 Gene

Previous GeneCards Identifiers for VWA8-AS1 Gene

  • GC13P042537

Summaries for VWA8-AS1 Gene

GeneCards Summary for VWA8-AS1 Gene

VWA8-AS1 (VWA8 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for VWA8-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VWA8-AS1 Gene

Genomics for VWA8-AS1 Gene

GeneHancer (GH) Regulatory Elements for VWA8-AS1 Gene

Promoters and enhancers for VWA8-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I041959 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 +5.7 5717 4.6 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 ZNF207 ZHX2 VWA8 DGKH ENSG00000231530 RNU6-74P AKAP11 VWA8-AS1 GC13P041978
GH13I041972 Enhancer 0.9 Ensembl ENCODE 0.4 +18.2 18197 2.4 SOX5 SOX13 CTCF FOXA2 SAP130 HLF MNT ZNF644 ZBTB40 RAD21 VWA8 RGCC GC13P041978 VWA8-AS1 LOC105370176
GH13I041971 Enhancer 0.2 ENCODE 0.4 +16.2 16232 0.2 GC13P041978 VWA8 VWA8-AS1
GH13I041935 Enhancer 0.2 FANTOM5 0.3 -20.0 -20035 0 VWA8 KARSP1 VWA8-AS1
GH13I041928 Enhancer 0.2 Ensembl 0.3 -27.1 -27107 0.6 RNU6-74P VWA8 KARSP1 VWA8-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around VWA8-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for VWA8-AS1 Gene

Genomic Locations for VWA8-AS1 Gene
chr13:41,955,808-41,981,565
(GRCh38/hg38)
Size:
25,758 bases
Orientation:
Plus strand
chr13:42,535,305-42,555,701
(GRCh37/hg19)

Genomic View for VWA8-AS1 Gene

Genes around VWA8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VWA8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VWA8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VWA8-AS1 Gene

Proteins for VWA8-AS1 Gene

Post-translational modifications for VWA8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VWA8-AS1 Gene

Domains & Families for VWA8-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VWA8-AS1 Gene

Function for VWA8-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VWA8-AS1 Gene

Localization for VWA8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VWA8-AS1 Gene

Pathways & Interactions for VWA8-AS1 Gene

SuperPathways for VWA8-AS1 Gene

No Data Available

Interacting Proteins for VWA8-AS1 Gene

Gene Ontology (GO) - Biological Process for VWA8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VWA8-AS1 Gene

Drugs & Compounds for VWA8-AS1 Gene

No Compound Related Data Available

Transcripts for VWA8-AS1 Gene

mRNA/cDNA for VWA8-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VWA8-AS1 Gene

VWA8 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VWA8-AS1 Gene

No ASD Table

Relevant External Links for VWA8-AS1 Gene

GeneLoc Exon Structure for
VWA8-AS1
ECgene alternative splicing isoforms for
VWA8-AS1

Expression for VWA8-AS1 Gene

SOURCE GeneReport for Unigene cluster for VWA8-AS1 Gene:

Hs.147766
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VWA8-AS1 Gene

Orthologs for VWA8-AS1 Gene

Evolution for VWA8-AS1 Gene

ENSEMBL:
Gene Tree for VWA8-AS1 (if available)
TreeFam:
Gene Tree for VWA8-AS1 (if available)

No data available for Orthologs for VWA8-AS1 Gene

Paralogs for VWA8-AS1 Gene

No data available for Paralogs for VWA8-AS1 Gene

Variants for VWA8-AS1 Gene

Sequence variations from dbSNP and Humsavar for VWA8-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000269997 -- 41,977,848(+) A/G intron_variant
rs1000314872 -- 41,973,978(+) T/C intron_variant
rs1000329365 -- 41,978,493(+) G/A intron_variant
rs1000352396 -- 41,966,987(+) G/A intron_variant
rs1000619426 -- 41,981,508(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for VWA8-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3127n54 CNV loss 21841781
dgv75e55 CNV loss 17911159
nsv1038912 CNV gain 25217958
nsv832588 CNV gain 17160897

Additional Variant Information for VWA8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VWA8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VWA8-AS1 Gene

Disorders for VWA8-AS1 Gene

Additional Disease Information for VWA8-AS1

No disorders were found for VWA8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VWA8-AS1 Gene

Publications for VWA8-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for VWA8-AS1 Gene

Sources for VWA8-AS1 Gene

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