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Aliases for VWA5A Gene

Aliases for VWA5A Gene

  • Von Willebrand Factor A Domain Containing 5A 2 3 5
  • Loss Of Heterozygosity 11 Chromosomal Region 2 Gene A Protein 3 4
  • Loss Of Heterozygosity, 11, Chromosomal Region 2, Gene A 2 3
  • Breast Cancer Suppressor Candidate 1 3 4
  • LOH11CR2A 3 4
  • BCSC-1 3 4
  • BCSC1 3 4
  • Von Willebrand Factor A Domain-Containing Protein 5A 3
  • Ortholog Of Mouse AW551984 3

External Ids for VWA5A Gene

Previous HGNC Symbols for VWA5A Gene

  • LOH11CR2A

Previous GeneCards Identifiers for VWA5A Gene

  • GC11P123492
  • GC11P123987
  • GC11P119926

Summaries for VWA5A Gene

GeneCards Summary for VWA5A Gene

VWA5A (Von Willebrand Factor A Domain Containing 5A) is a Protein Coding gene. An important paralog of this gene is VWA5B1.

UniProtKB/Swiss-Prot for VWA5A Gene

  • May play a role in tumorigenesis as a tumor suppressor. Altered expression of this protein and disruption of the molecular pathway it is involved in, may contribute directly to or modify tumorigenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VWA5A Gene

Genomics for VWA5A Gene

Regulatory Elements for VWA5A Gene

Enhancers for VWA5A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F124078 0.6 FANTOM5 ENCODE 72.9 -35.3 -35312 3.3 PKNOX1 ATF1 ARNT ELK1 GATA2 JUNB NCOA1 MBD2 MEF2D SMARCA4 VWA5A MSANTD2 SPA17 OR8G2 OR8B12 OR8D1 OR8A1 LOC105369545 GC11M124060
GH11F124275 1.1 FANTOM5 ENCODE 43.2 +161.0 161040 1.3 HDAC1 PKNOX1 ATF1 TBL1XR1 ELK1 GATA2 SIRT6 ETV6 CREM JUNB VWA5A OR8D1 OR8G5 OR8G2 TBRG1 OR8B12 SLC5A4P1
GH11F124191 0.8 FANTOM5 42.3 +76.7 76728 0.3 DDX20 MAFG VWA5A OR8A1 OR6X1 OR10G7 OR8G2 OR8B12 OR4D5 OR10G4 OR6M1 OR8G1
GH11F124177 0.6 FANTOM5 34.6 +62.2 62203 0.2 VWA5A TBRG1 OR8B12 OR10D3 OR10D1P
GH11F124193 1 Ensembl ENCODE 31.1 +79.1 79134 2.4 TBP CTCF CBX3 TAF1 MAX RAD21 CHAMP1 SMC3 ZSCAN29 CREM VWA5A OR8D1 SPA17 GC11P124186 OR8F1P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around VWA5A on UCSC Golden Path with GeneCards custom track

Promoters for VWA5A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001773199 538 1801 TBP HDAC1 ATF1 CBX3 ARNT TBL1XR1 ARID4B SIN3A ZBTB40 RAD21

Genomic Location for VWA5A Gene

Chromosome:
11
Start:
124,115,362 bp from pter
End:
124,147,721 bp from pter
Size:
32,360 bases
Orientation:
Plus strand

Genomic View for VWA5A Gene

Genes around VWA5A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VWA5A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VWA5A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VWA5A Gene

Proteins for VWA5A Gene

  • Protein details for VWA5A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O00534-VMA5A_HUMAN
    Recommended name:
    von Willebrand factor A domain-containing protein 5A
    Protein Accession:
    O00534
    Secondary Accessions:
    • Q6UN19
    • Q6UN20
    • Q9BVF8

    Protein attributes for VWA5A Gene

    Size:
    786 amino acids
    Molecular mass:
    86489 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for VWA5A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for VWA5A Gene

Post-translational modifications for VWA5A Gene

  • Ubiquitination at Lys 621
  • Modification sites at PhosphoSitePlus

Other Protein References for VWA5A Gene

No data available for DME Specific Peptides for VWA5A Gene

Domains & Families for VWA5A Gene

Protein Domains for VWA5A Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

O00534

UniProtKB/Swiss-Prot:

VMA5A_HUMAN :
  • Contains 1 VIT domain.
Domain:
  • Contains 1 VIT domain.
  • Contains 1 VWFA domain.
genes like me logo Genes that share domains with VWA5A: view

No data available for Gene Families for VWA5A Gene

Function for VWA5A Gene

Molecular function for VWA5A Gene

UniProtKB/Swiss-Prot Function:
May play a role in tumorigenesis as a tumor suppressor. Altered expression of this protein and disruption of the molecular pathway it is involved in, may contribute directly to or modify tumorigenesis.

Phenotypes for VWA5A Gene

genes like me logo Genes that share phenotypes with VWA5A: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for VWA5A Gene

Localization for VWA5A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for VWA5A Gene COMPARTMENTS Subcellular localization image for VWA5A gene
Compartment Confidence
nucleus 5
cytosol 2
endoplasmic reticulum 1
mitochondrion 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for VWA5A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with VWA5A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for VWA5A Gene

Pathways & Interactions for VWA5A Gene

SuperPathways for VWA5A Gene

No Data Available

Interacting Proteins for VWA5A Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000376504%0d%0a9606.ENSP00000289429%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000376504 O00534-VMA5A_HUMAN for VWA5A Gene via STRING IID

Gene Ontology (GO) - Biological Process for VWA5A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VWA5A Gene

Transcripts for VWA5A Gene

Unigene Clusters for VWA5A Gene

Von Willebrand factor A domain containing 5A:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for VWA5A Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^ 19
SP1: - - -
SP2: - - - -
SP3: - -
SP4: - - -
SP5: - - - - - - - - - - - - - -
SP6: - - - - - - - - - - - - - - -
SP7: -
SP8:

Relevant External Links for VWA5A Gene

GeneLoc Exon Structure for
VWA5A
ECgene alternative splicing isoforms for
VWA5A

Expression for VWA5A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for VWA5A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for VWA5A Gene

This gene is overexpressed in Stomach (11.0), Peripheral blood mononuclear cells (6.9), and Islet of Langerhans (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for VWA5A Gene



Protein tissue co-expression partners for VWA5A Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of VWA5A Gene:

VWA5A

SOURCE GeneReport for Unigene cluster for VWA5A Gene:

Hs.152944

mRNA Expression by UniProt/SwissProt for VWA5A Gene:

O00534-VMA5A_HUMAN
Tissue specificity: Expressed at low level in many tissues. Not expressed in 80% of tumor cell lines tested.
genes like me logo Genes that share expression patterns with VWA5A: view

Primer Products

No data available for mRNA differential expression in normal tissues for VWA5A Gene

Orthologs for VWA5A Gene

This gene was present in the common ancestor of chordates.

Orthologs for VWA5A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia VWA5A 34 35
  • 99.32 (n)
cow
(Bos Taurus)
Mammalia VWA5A 34 35
  • 79.28 (n)
dog
(Canis familiaris)
Mammalia VWA5A 34 35
  • 79.17 (n)
rat
(Rattus norvegicus)
Mammalia Vwa5a 34
  • 75.01 (n)
mouse
(Mus musculus)
Mammalia Vwa5a 34 16 35
  • 74.86 (n)
AW551984 35
  • 63 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 65 (a)
OneToMany
-- 35
  • 59 (a)
OneToMany
-- 35
  • 50 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia VWA5A 35
  • 55 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 35
  • 32 (a)
OneToMany
-- 35
  • 31 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 45 (a)
OneToMany
-- 35
  • 36 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101734291 34
  • 60.29 (n)
African clawed frog
(Xenopus laevis)
Amphibia MGC68953 34
zebrafish
(Danio rerio)
Actinopterygii LOC100535191 34
  • 54.33 (n)
VWA5A (3 of 5) 35
  • 48 (a)
OneToMany
VWA5A (5 of 5) 35
  • 47 (a)
OneToMany
VWA5A (1 of 5) 35
  • 43 (a)
OneToMany
CU459204.1 35
  • 41 (a)
OneToMany
VWA5A (2 of 5) 35
  • 38 (a)
OneToMany
Species where no ortholog for VWA5A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for VWA5A Gene

ENSEMBL:
Gene Tree for VWA5A (if available)
TreeFam:
Gene Tree for VWA5A (if available)

Paralogs for VWA5A Gene

Paralogs for VWA5A Gene

genes like me logo Genes that share paralogs with VWA5A: view

Variants for VWA5A Gene

Sequence variations from dbSNP and Humsavar for VWA5A Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10437697 -- 124,138,737(+) taggt(C/T)gtttc intron-variant
rs10437698 -- 124,138,763(+) gtttt(A/C)tttgc intron-variant
rs10466537 -- 124,135,453(+) GGATC(C/G)GAAGA intron-variant
rs10502275 -- 124,141,115(-) ATTCA(C/T)TAAAG intron-variant
rs10512 -- 124,146,700(+) AGTGC(A/T)GTAAA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for VWA5A Gene

Variant ID Type Subtype PubMed ID
dgv82n21 CNV gain 19592680

Variation tolerance for VWA5A Gene

Residual Variation Intolerance Score: 86.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.49; 77.58% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for VWA5A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VWA5A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for VWA5A Gene

Disorders for VWA5A Gene

Relevant External Links for VWA5A

Genetic Association Database (GAD)
VWA5A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VWA5A

No disorders were found for VWA5A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VWA5A Gene

Publications for VWA5A Gene

  1. The BCSC-1 locus at chromosome 11q23-q24 is a candidate tumor suppressor gene. (PMID: 14504409) Martin E.S. … Croce C.M. (Proc. Natl. Acad. Sci. U.S.A. 2003) 2 3 4 64
  2. Molecular cloning and characterization of LOH11CR2A, a new gene within a refined minimal region of LOH at 11q23. (PMID: 9417908) Monaco C. … Croce C.M. (Genomics 1997) 2 3 4 64
  3. A genome-wide association study of aging. (PMID: 21782286) Walter S. … Franceschini N. (Neurobiol. Aging 2011) 3 46 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. PAK4 promotes kinase-independent stabilization of RhoU to modulate cell adhesion. (PMID: 26598620) Dart A.E. … Wells C.M. (J. Cell Biol. 2015) 3 64

Products for VWA5A Gene

Sources for VWA5A Gene

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