Free for academic non-profit institutions. Other users need a Commercial license

Aliases for VTRNA3-1P Gene

Subcategory (RNA class) for VTRNA3-1P Gene

vault RNA

Aliases for VTRNA3-1P Gene

  • Vault RNA 3-1, Pseudogene 2 3
  • Vault RNA 3 (Pseudogene) 2 3
  • Vault RNA Component 4 Pseudogene 3
  • Vault RNA Component 4 2
  • VAULTRC4 3
  • VTRNA3P 3
  • Hvg-4 3
  • HVG4 3
  • HVGX 3

External Ids for VTRNA3-1P Gene

ORGUL Members for VTRNA3-1P Gene

Previous HGNC Symbols for VTRNA3-1P Gene

  • VAULTRC4
  • VTRNA3P

Summaries for VTRNA3-1P Gene

GeneCards Summary for VTRNA3-1P Gene

VTRNA3-1P (Vault RNA 3-1, Pseudogene) is a Pseudogene, and is affiliated with the vault RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VTRNA3-1P Gene

Genomics for VTRNA3-1P Gene

Genomic Location for VTRNA3-1P Gene

Start:
53,462,209 bp from pter
End:
53,462,310 bp from pter
Size:
102 bases
Orientation:
Plus strand

Genomic View for VTRNA3-1P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for VTRNA3-1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VTRNA3-1P Gene

No data available for Regulatory Elements for VTRNA3-1P Gene

Proteins for VTRNA3-1P Gene

Post-translational modifications for VTRNA3-1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for VTRNA3-1P Gene

Domains for VTRNA3-1P Gene

Gene Families for VTRNA3-1P Gene

HGNC:
  • VAULT :Vault RNAs (vtRNAs)

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with VTRNA3-1P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VTRNA3-1P Gene

Function for VTRNA3-1P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for VTRNA3-1P Gene

Localization for VTRNA3-1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VTRNA3-1P Gene

Pathways for VTRNA3-1P Gene

SuperPathways for VTRNA3-1P Gene

No Data Available

Interacting Proteins for VTRNA3-1P Gene

Gene Ontology (GO) - Biological Process for VTRNA3-1P Gene

None

No data available for Pathways by source for VTRNA3-1P Gene

Transcripts for VTRNA3-1P Gene

mRNA/cDNA for VTRNA3-1P Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VTRNA3-1P Gene

No ASD Table

Relevant External Links for VTRNA3-1P Gene

GeneLoc Exon Structure for
VTRNA3-1P
ECgene alternative splicing isoforms for
VTRNA3-1P

Expression for VTRNA3-1P Gene

mRNA expression in normal human tissues for VTRNA3-1P Gene

genes like me logo Genes that share expressions with VTRNA3-1P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for VTRNA3-1P Gene

Orthologs for VTRNA3-1P Gene

This gene was present in the common ancestor of chordates.

Orthologs for VTRNA3-1P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Vault 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia Vault 36
  • 59 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25403 36
  • 46 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia Vault 36
  • 46 (a)
OneToMany
chicken
(Gallus gallus)
Aves Vault 36
  • 66 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia Vault 36
  • 56 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii Vault 36
  • 45 (a)
ManyToMany
Vault 36
  • 51 (a)
ManyToMany
Vault 36
  • 51 (a)
ManyToMany
Vault 36
  • 59 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea Vault 36
  • 49 (a)
OneToMany
Species with no ortholog for VTRNA3-1P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for VTRNA3-1P Gene

ENSEMBL:
Gene Tree for VTRNA3-1P (if available)
TreeFam:
Gene Tree for VTRNA3-1P (if available)

Paralogs for VTRNA3-1P Gene

No data available for Paralogs for VTRNA3-1P Gene

Variants for VTRNA3-1P Gene

Relevant External Links for VTRNA3-1P Gene

HapMap Linkage Disequilibrium report
VTRNA3-1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for VTRNA3-1P Gene

Disorders for VTRNA3-1P Gene

No disorders were found for VTRNA3-1P Gene.

No data available for UniProtKB/Swiss-Prot for VTRNA3-1P Gene

Publications for VTRNA3-1P Gene

  1. Identification of conserved vault RNA expression elements and a non-expressed mouse vault RNA gene. (PMID: 12758122) Kickhoefer V.A. … Rome L.H. (Gene 2003) 2 3
  2. Epstein-barr virus-induced expression of a novel human vault RNA. (PMID: 19298825) Nandy C. … Polacek N. (J. Mol. Biol. 2009) 2 3
  3. Evolution of vault RNAs. (PMID: 19491402) Stadler P.F. … Ullmann K. (Mol. Biol. Evol. 2009) 2 3
  4. Association study of 21 circadian genes with bipolar I disorder, schizoaffective disorder, and schizophrenia. (PMID: 19839995) Mansour H.A. … Nimgaonkar V.L. (Bipolar Disord 2009) 3
  5. Vaults are up-regulated in multidrug-resistant cancer cell lines. (PMID: 9535882) Kickhoefer V.A. … Rome L.H. (J. Biol. Chem. 1998) 3

Products for VTRNA3-1P Gene

Sources for VTRNA3-1P Gene

Back to Top

Content