Free for academic non-profit institutions. Other users need a Commercial license

Aliases for VTRNA1-3 Gene

Subcategory (RNA class) for VTRNA1-3 Gene

vault RNA

Quality Score for this RNA gene is

3

Aliases for VTRNA1-3 Gene

  • Vault RNA 1-3 2 3
  • Vault RNA Component 3 2 3
  • VAULTRC3 3 6
  • HVG3 3 6
  • Hvg-3 3
  • VR3 3

External Ids for VTRNA1-3 Gene

ORGUL Members for VTRNA1-3 Gene

Previous Symbols for VTRNA1-3 Gene

  • VAULTRC3

Summaries for VTRNA1-3 Gene

GeneCards Summary for VTRNA1-3 Gene

VTRNA1-3 (Vault RNA 1-3) is a RNA Gene, and belongs to vault RNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VTRNA1-3 Gene

Genomics for VTRNA1-3 Gene

Genomic Location for VTRNA1-3 Gene

Start:
140,726,158 bp from pter
End:
140,726,246 bp from pter
Size:
89 bases
Orientation:
Plus strand

Genomic View for VTRNA1-3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for VTRNA1-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VTRNA1-3 Gene

Regulatory Elements for VTRNA1-3 Gene

Proteins for VTRNA1-3 Gene

Post-translational modifications for VTRNA1-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VTRNA1-3 Gene

Domains for VTRNA1-3 Gene

Gene Families for VTRNA1-3 Gene

HGNC:
  • VAULT :Vault RNAs (vtRNAs)
genes like me logo Genes that share domains with VTRNA1-3: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for VTRNA1-3 Gene

Function for VTRNA1-3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for VTRNA1-3 Gene

Localization for VTRNA1-3 Gene

No data available for Gene Ontology (GO) - Cellular Components for VTRNA1-3 Gene

Pathways for VTRNA1-3 Gene

SuperPathways for VTRNA1-3 Gene

No Data Available

Interacting Proteins for VTRNA1-3 Gene

Gene Ontology (GO) - Biological Process for VTRNA1-3 Gene

None

No data available for Pathways by source for VTRNA1-3 Gene

Transcripts for VTRNA1-3 Gene

mRNA/cDNA for VTRNA1-3 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VTRNA1-3 Gene

No ASD Table

Relevant External Links for VTRNA1-3 Gene

GeneLoc Exon Structure for
VTRNA1-3
ECgene alternative splicing isoforms for
VTRNA1-3

Expression for VTRNA1-3 Gene

mRNA expression in normal human tissues for VTRNA1-3 Gene

genes like me logo Genes that share expressions with VTRNA1-3: view

Orthologs for VTRNA1-3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for VTRNA1-3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Vault 37
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia Vault 37
  • 60 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Vaultrc5 37
  • 45 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia Vault 37
  • 53 (a)
ManyToMany
chicken
(Gallus gallus)
Aves Vault 37
  • 59 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia Vault 37
  • 55 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii Vault 37
  • 49 (a)
ManyToMany
Vault 37
  • 52 (a)
ManyToMany
Vault 37
  • 54 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea Vault 37
  • 47 (a)
OneToMany
Species with no ortholog for VTRNA1-3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for VTRNA1-3 Gene

ENSEMBL:
Gene Tree for VTRNA1-3 (if available)
TreeFam:
Gene Tree for VTRNA1-3 (if available)

Paralogs for VTRNA1-3 Gene

No data available for Paralogs for VTRNA1-3 Gene

Variants for VTRNA1-3 Gene

Sequence variations from dbSNP and Humsavar for VTRNA1-3 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs2563283 -- 140,726,393(+) CCAAA(A/C)ACAAC downstream-variant-500B
rs6869325 -- 140,724,789(+) tgaat(A/G)taatg upstream-variant-2KB
rs11288317 -- 140,725,681(+) AAAAA(-/A)GCGCC upstream-variant-2KB
rs13153944 -- 140,724,302(+) TCAAG(C/T)TGGTG upstream-variant-2KB
rs13158775 -- 140,725,038(+) TACAG(G/T)GCACA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for VTRNA1-3 Gene

Variant ID Type Subtype PubMed ID
nsv830508 CNV Loss 17160897
nsv882950 CNV Loss 21882294
esv2730832 CNV Deletion 23290073

Relevant External Links for VTRNA1-3 Gene

HapMap Linkage Disequilibrium report
VTRNA1-3

Disorders for VTRNA1-3 Gene

No disorders were found for VTRNA1-3 Gene.

No data available for UniProtKB/Swiss-Prot for VTRNA1-3 Gene

Publications for VTRNA1-3 Gene

  1. Vaults are up-regulated in multidrug-resistant cancer cell lines. (PMID: 9535882) Kickhoefer V.A. … Rome L.H. (J. Biol. Chem. 1998) 2 3
  2. Epstein-barr virus-induced expression of a novel human vault RNA. (PMID: 19298825) Nandy C. … Polacek N. (J. Mol. Biol. 2009) 2 3
  3. Evolution of vault RNAs. (PMID: 19491402) Stadler P.F. … Ullmann K. (Mol. Biol. Evol. 2009) 2 3

Products for VTRNA1-3 Gene

Sources for VTRNA1-3 Gene

Back to Top

Content