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Aliases for VTRNA1-3 Gene

Subcategory (RNA class) for VTRNA1-3 Gene

vault RNA

Quality Score for this RNA gene is


Aliases for VTRNA1-3 Gene

  • Vault RNA 1-3 2 3 5
  • Vault RNA Component 3 2 3
  • VAULTRC3 3
  • Hvg-3 3
  • HVG3 3
  • VR3 3

External Ids for VTRNA1-3 Gene

ORGUL Members for VTRNA1-3 Gene

Previous HGNC Symbols for VTRNA1-3 Gene


Previous GeneCards Identifiers for VTRNA1-3 Gene

  • GC05P140087
  • GC05P140105
  • GC05P135250
  • GC05P141429
  • GC05P141567
  • GC05P141669
  • GC05P141770
  • GC05P141870

Summaries for VTRNA1-3 Gene

GeneCards Summary for VTRNA1-3 Gene

VTRNA1-3 (Vault RNA 1-3) is an RNA Gene, and is affiliated with the vault RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VTRNA1-3 Gene

Genomics for VTRNA1-3 Gene

Regulatory Elements for VTRNA1-3 Gene

Enhancers for VTRNA1-3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G140725 1.1 ENCODE 0.7 -0.2 -176 1.1 PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 ZNF143 FOS KLF13 HDAC3 LOC102723915 PCDHA4 TMCO6 FCHSD1 HARS LOC101929719 PCDHA3 GC05P141999 VTRNA1-3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around VTRNA1-3 on UCSC Golden Path with GeneCards custom track

Promoters for VTRNA1-3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000187822 -158 801 PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 ZNF143 FOS KLF13

Genomic Location for VTRNA1-3 Gene

140,726,158 bp from pter
140,726,246 bp from pter
89 bases
Plus strand

Genomic View for VTRNA1-3 Gene

Genes around VTRNA1-3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VTRNA1-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VTRNA1-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VTRNA1-3 Gene

Proteins for VTRNA1-3 Gene

Post-translational modifications for VTRNA1-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VTRNA1-3 Gene

Domains & Families for VTRNA1-3 Gene

Gene Families for VTRNA1-3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with VTRNA1-3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VTRNA1-3 Gene

Function for VTRNA1-3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VTRNA1-3 Gene

Localization for VTRNA1-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VTRNA1-3 Gene

Pathways & Interactions for VTRNA1-3 Gene

SuperPathways for VTRNA1-3 Gene

No Data Available

Interacting Proteins for VTRNA1-3 Gene

Gene Ontology (GO) - Biological Process for VTRNA1-3 Gene


No data available for Pathways by source and SIGNOR curated interactions for VTRNA1-3 Gene

Transcripts for VTRNA1-3 Gene

mRNA/cDNA for VTRNA1-3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VTRNA1-3 Gene

No ASD Table

Relevant External Links for VTRNA1-3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for VTRNA1-3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VTRNA1-3 Gene

genes like me logo Genes that share expression patterns with VTRNA1-3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VTRNA1-3 Gene

Orthologs for VTRNA1-3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for VTRNA1-3 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia Vault 35
  • 96 (a)
(Bos Taurus)
Mammalia Vault 35
  • 60 (a)
(Monodelphis domestica)
Mammalia Vault 35
  • 53 (a)
(Mus musculus)
Mammalia Vaultrc5 35
  • 45 (a)
(Gallus gallus)
Aves Vault 35
  • 59 (a)
(Anolis carolinensis)
Reptilia Vault 35
  • 55 (a)
(Danio rerio)
Actinopterygii Vault 35 35 35
  • 49 (a)
sea squirt
(Ciona savignyi)
Ascidiacea Vault 35
  • 47 (a)
Species where no ortholog for VTRNA1-3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for VTRNA1-3 Gene

Gene Tree for VTRNA1-3 (if available)
Gene Tree for VTRNA1-3 (if available)

Paralogs for VTRNA1-3 Gene

No data available for Paralogs for VTRNA1-3 Gene

Variants for VTRNA1-3 Gene

Sequence variations from dbSNP and Humsavar for VTRNA1-3 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000849341 -- 140,726,692(+) CTTTG(C/T)CTCTA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1003675078 -- 140,724,580(+) ATGAT(C/T)CTTAT intron-variant, upstream-variant-2KB
rs1004175425 -- 140,726,633(+) GAAGA(A/T)TACAT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1004195871 -- 140,724,281(+) CATGG(A/G)GGTGT intron-variant, upstream-variant-2KB
rs1004696387 -- 140,726,307(+) AATGG(C/T)TGATT intron-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for VTRNA1-3 Gene

Variant ID Type Subtype PubMed ID
esv2730832 CNV deletion 23290073
nsv830508 CNV loss 17160897
nsv980733 CNV duplication 23825009

Relevant External Links for VTRNA1-3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VTRNA1-3 Gene

Disorders for VTRNA1-3 Gene

Relevant External Links for VTRNA1-3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for VTRNA1-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VTRNA1-3 Gene

Publications for VTRNA1-3 Gene

  1. Epstein-barr virus-induced expression of a novel human vault RNA. (PMID: 19298825) Nandy C. … Polacek N. (J. Mol. Biol. 2009) 2 3 64
  2. Evolution of vault RNAs. (PMID: 19491402) Stadler P.F. … Ullmann K. (Mol. Biol. Evol. 2009) 2 3 64
  3. Vaults are up-regulated in multidrug-resistant cancer cell lines. (PMID: 9535882) Kickhoefer V.A. … Rome L.H. (J. Biol. Chem. 1998) 2 3 64

Products for VTRNA1-3 Gene

Sources for VTRNA1-3 Gene

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