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Aliases for VTRNA1-2 Gene

Subcategory (RNA class) for VTRNA1-2 Gene

vault RNA

Quality Score for this RNA gene is

3

Aliases for VTRNA1-2 Gene

  • Vault RNA 1-2 2 3 5
  • Vault RNA Component 2 2 3
  • VAULTRC2 3
  • Hvg-2 3
  • HVG2 3
  • VR2 3

External Ids for VTRNA1-2 Gene

ORGUL Members for VTRNA1-2 Gene

Previous HGNC Symbols for VTRNA1-2 Gene

  • VAULTRC2

Previous GeneCards Identifiers for VTRNA1-2 Gene

  • GC05P140082
  • GC05P135243
  • GC05P140100
  • GC05P140102
  • GC05P140113
  • GC05P141428
  • GC05P141566

Summaries for VTRNA1-2 Gene

GeneCards Summary for VTRNA1-2 Gene

VTRNA1-2 (Vault RNA 1-2) is an RNA Gene, and is affiliated with the vault RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VTRNA1-2 Gene

Genomics for VTRNA1-2 Gene

Regulatory Elements for VTRNA1-2 Gene

Enhancers for VTRNA1-2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around VTRNA1-2 on UCSC Golden Path with GeneCards custom track

Promoters for VTRNA1-2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around VTRNA1-2 on UCSC Golden Path with GeneCards custom track

Genomic Location for VTRNA1-2 Gene

Chromosome:
5
Start:
140,718,925 bp from pter
End:
140,719,013 bp from pter
Size:
89 bases
Orientation:
Plus strand

Genomic View for VTRNA1-2 Gene

Genes around VTRNA1-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VTRNA1-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VTRNA1-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VTRNA1-2 Gene

Proteins for VTRNA1-2 Gene

Post-translational modifications for VTRNA1-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VTRNA1-2 Gene

Domains & Families for VTRNA1-2 Gene

Gene Families for VTRNA1-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with VTRNA1-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VTRNA1-2 Gene

Function for VTRNA1-2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VTRNA1-2 Gene

Localization for VTRNA1-2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for VTRNA1-2 Gene COMPARTMENTS Subcellular localization image for VTRNA1-2 gene
Compartment Confidence
mitochondrion 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for VTRNA1-2 Gene

Pathways & Interactions for VTRNA1-2 Gene

SuperPathways for VTRNA1-2 Gene

No Data Available

Interacting Proteins for VTRNA1-2 Gene

Gene Ontology (GO) - Biological Process for VTRNA1-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VTRNA1-2 Gene

Drugs & Compounds for VTRNA1-2 Gene

No Compound Related Data Available

Transcripts for VTRNA1-2 Gene

mRNA/cDNA for VTRNA1-2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VTRNA1-2 Gene

No ASD Table

Relevant External Links for VTRNA1-2 Gene

GeneLoc Exon Structure for
VTRNA1-2
ECgene alternative splicing isoforms for
VTRNA1-2

Expression for VTRNA1-2 Gene

mRNA expression in normal human tissues for VTRNA1-2 Gene

genes like me logo Genes that share expression patterns with VTRNA1-2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for VTRNA1-2 Gene

Orthologs for VTRNA1-2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for VTRNA1-2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia Vault 36
  • 64 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia Vault 36
  • 50 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Vaultrc5 36
  • 43 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia Vault 36
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves Vault 36
  • 57 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia Vault 36
  • 63 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii Vault 36
  • 49 (a)
ManyToMany
Vault 36
  • 53 (a)
ManyToMany
Vault 36
  • 52 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea Vault 36
  • 49 (a)
OneToMany
Species with no ortholog for VTRNA1-2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for VTRNA1-2 Gene

ENSEMBL:
Gene Tree for VTRNA1-2 (if available)
TreeFam:
Gene Tree for VTRNA1-2 (if available)

Paralogs for VTRNA1-2 Gene

No data available for Paralogs for VTRNA1-2 Gene

Variants for VTRNA1-2 Gene

Structural Variations from Database of Genomic Variants (DGV) for VTRNA1-2 Gene

Variant ID Type Subtype PubMed ID
nsv830508 CNV Loss 17160897
nsv882950 CNV Loss 21882294
esv2730832 CNV Deletion 23290073
esv2661261 CNV Deletion 23128226
esv23837 CNV Loss 19812545
esv2730833 CNV Deletion 23290073

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Variation tolerance and Relevant External Links for VTRNA1-2 Gene

Disorders for VTRNA1-2 Gene

Relevant External Links for VTRNA1-2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VTRNA1-2

No disorders were found for VTRNA1-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VTRNA1-2 Gene

Publications for VTRNA1-2 Gene

  1. Evolution of vault RNAs. (PMID: 19491402) Stadler P.F. … Ullmann K. (Mol. Biol. Evol. 2009) 2 3 67
  2. Epstein-barr virus-induced expression of a novel human vault RNA. (PMID: 19298825) Nandy C. … Polacek N. (J. Mol. Biol. 2009) 2 3
  3. Vaults are up-regulated in multidrug-resistant cancer cell lines. (PMID: 9535882) Kickhoefer V.A. … Rome L.H. (J. Biol. Chem. 1998) 2 3
  4. The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle. (PMID: 21555518) Warnatz H.J. … Yaspo M.L. (J. Biol. Chem. 2011) 3
  5. Vaults and telomerase share a common subunit, TEP1. (PMID: 10551828) Kickhoefer V.A. … Rome L.H. (J. Biol. Chem. 1999) 3

Products for VTRNA1-2 Gene

Sources for VTRNA1-2 Gene

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