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Aliases for VSTM5 Gene

Aliases for VSTM5 Gene

  • V-Set And Transmembrane Domain Containing 5 2 3
  • C11orf90 3 4
  • V-Set And Transmembrane Domain-Containing Protein 5 3
  • Chromosome 11 Open Reading Frame 90 2

External Ids for VSTM5 Gene

Previous HGNC Symbols for VSTM5 Gene

  • C11orf90

Previous GeneCards Identifiers for VSTM5 Gene

  • GC11M093552
  • GC11M093554
  • GC11M093570

Summaries for VSTM5 Gene

GeneCards Summary for VSTM5 Gene

VSTM5 (V-Set And Transmembrane Domain Containing 5) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VSTM5 Gene

Genomics for VSTM5 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for VSTM5 Gene

Start:
93,818,232 bp from pter
End:
93,850,531 bp from pter
Size:
32,300 bases
Orientation:
Minus strand

Genomic View for VSTM5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for VSTM5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VSTM5 Gene

No data available for Regulatory Elements for VSTM5 Gene

Proteins for VSTM5 Gene

  • Protein details for VSTM5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MXK1-VSTM5_HUMAN
    Recommended name:
    V-set and transmembrane domain-containing protein 5
    Protein Accession:
    A8MXK1
    Secondary Accessions:

    Protein attributes for VSTM5 Gene

    Size:
    200 amino acids
    Molecular mass:
    22377 Da
    Quaternary structure:
    No Data Available

neXtProt entry for VSTM5 Gene

Proteomics data for VSTM5 Gene at MOPED

Post-translational modifications for VSTM5 Gene

  • Glycosylation at Asn102
  • Modification sites at PhosphoSitePlus

Other Protein References for VSTM5 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for VSTM5 Gene

Domains for VSTM5 Gene

Gene Families for VSTM5 Gene

HGNC:
  • VSET :Immunoglobulin superfamily / V-set domain containing

Protein Domains for VSTM5 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A8MXK1

UniProtKB/Swiss-Prot:

VSTM5_HUMAN :
  • A8MXK1
Domain:
  • Contains 1 Ig-like C2-type (immunoglobulin-like) domain.
genes like me logo Genes that share domains with VSTM5: view

No data available for Suggested Antigen Peptide Sequences for VSTM5 Gene

Function for VSTM5 Gene

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for VSTM5

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for VSTM5 Gene

Localization for VSTM5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for VSTM5 Gene

Membrane; Single-pass type I membrane protein.

Gene Ontology (GO) - Cellular Components for VSTM5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with VSTM5: view

No data available for Subcellular locations from COMPARTMENTS for VSTM5 Gene

Pathways for VSTM5 Gene

SuperPathways for VSTM5 Gene

No Data Available

Interacting Proteins for VSTM5 Gene

Gene Ontology (GO) - Biological Process for VSTM5 Gene

None

No data available for Pathways by source for VSTM5 Gene

Transcripts for VSTM5 Gene

mRNA/cDNA for VSTM5 Gene

(0) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VSTM5 Gene

V-set and transmembrane domain containing 5:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for VSTM5

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for VSTM5
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for VSTM5 Gene

No ASD Table

Relevant External Links for VSTM5 Gene

GeneLoc Exon Structure for
VSTM5
ECgene alternative splicing isoforms for
VSTM5

Expression for VSTM5 Gene

mRNA expression in normal human tissues for VSTM5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for VSTM5 Gene

This gene is overexpressed in Brain - Hypothalamus (6.8), Brain - Frontal Cortex (BA9) (6.1), Brain - Cortex (6.0), and Brain - Anterior cingulate cortex (BA24) (4.2).

SOURCE GeneReport for Unigene cluster for VSTM5 Gene Hs.512252

genes like me logo Genes that share expressions with VSTM5: view

In Situ Assay Products

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for VSTM5 Gene

Orthologs for VSTM5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for VSTM5 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia VSTM5 35
  • 86.33 (n)
  • 87 (a)
VSTM5 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia VSTM5 35
  • 80 (n)
  • 80 (a)
VSTM5 36
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Vstm5 35
  • 81.07 (n)
  • 77.89 (a)
Vstm5 16
Vstm5 36
  • 78 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia VSTM5 36
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia VSTM5 36
  • 72 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Vstm5 35
  • 81.74 (n)
  • 80.4 (a)
chicken
(Gallus gallus)
Aves VSTM5 35
  • 66.16 (n)
  • 63.96 (a)
VSTM5 36
  • 63 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia VSTM5 36
  • 47 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia vstm5 35
  • 58.33 (n)
  • 48.94 (a)
zebrafish
(Danio rerio)
Actinopterygii VSTM5 36
  • 32 (a)
OneToOne
Species with no ortholog for VSTM5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for VSTM5 Gene

ENSEMBL:
Gene Tree for VSTM5 (if available)
TreeFam:
Gene Tree for VSTM5 (if available)

Paralogs for VSTM5 Gene

No data available for Paralogs for VSTM5 Gene

Variants for VSTM5 Gene

Sequence variations from dbSNP and Humsavar for VSTM5 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs582045 -- 93,843,662(+) TGTTA(C/T)TTATT intron-variant
rs582136 -- 93,838,992(+) CCAGC(C/T)CCACT intron-variant
rs584084 -- 93,839,453(+) CTGCT(C/G)CTTAG intron-variant
rs586029 -- 93,828,736(+) AGAAC(C/T)AGAAA intron-variant
rs592928 -- 93,845,547(+) GAGTC(A/G)TTTCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for VSTM5 Gene

Variant ID Type Subtype PubMed ID
nsv898173 CNV Loss 21882294
nsv898181 CNV Gain 21882294
nsv898182 CNV Gain 21882294
esv2744923 CNV Deletion 23290073
nsv826039 CNV Loss 20364138
esv1952279 CNV Deletion 18987734
esv3250 CNV Deletion 18987735
esv2744924 CNV Deletion 23290073

Relevant External Links for VSTM5 Gene

HapMap Linkage Disequilibrium report
VSTM5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for VSTM5 Gene

Disorders for VSTM5 Gene

No disorders were found for VSTM5 Gene.

No data available for UniProtKB/Swiss-Prot for VSTM5 Gene

Publications for VSTM5 Gene

  1. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 2 3 4

Products for VSTM5 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate VSTM5
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for VSTM5
    • Block miRNA regulation of VSTM5 using miScript Target Protectors

    Sources for VSTM5 Gene

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