Free for academic non-profit institutions. Other users need a Commercial license

Aliases for VSTM5 Gene

Aliases for VSTM5 Gene

  • V-Set And Transmembrane Domain Containing 5 2 3 5
  • C11orf90 3 4
  • Chromosome 11 Open Reading Frame 90 2

External Ids for VSTM5 Gene

Previous HGNC Symbols for VSTM5 Gene

  • C11orf90

Previous GeneCards Identifiers for VSTM5 Gene

  • GC11M093552
  • GC11M093554
  • GC11M093570

Summaries for VSTM5 Gene

GeneCards Summary for VSTM5 Gene

VSTM5 (V-Set And Transmembrane Domain Containing 5) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VSTM5 Gene

Genomics for VSTM5 Gene

Regulatory Elements for VSTM5 Gene

Promoters for VSTM5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around VSTM5 on UCSC Golden Path with GeneCards custom track

Genomic Location for VSTM5 Gene

93,818,232 bp from pter
93,850,531 bp from pter
32,300 bases
Minus strand

Genomic View for VSTM5 Gene

Genes around VSTM5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VSTM5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VSTM5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VSTM5 Gene

Proteins for VSTM5 Gene

  • Protein details for VSTM5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    V-set and transmembrane domain-containing protein 5
    Protein Accession:

    Protein attributes for VSTM5 Gene

    200 amino acids
    Molecular mass:
    22377 Da
    Quaternary structure:
    No Data Available

neXtProt entry for VSTM5 Gene

Proteomics data for VSTM5 Gene at MOPED

Post-translational modifications for VSTM5 Gene

  • Glycosylation at Asn 102
  • Modification sites at PhosphoSitePlus

Other Protein References for VSTM5 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for VSTM5 Gene

Domains & Families for VSTM5 Gene

Gene Families for VSTM5 Gene

Protein Domains for VSTM5 Gene


Graphical View of Domain Structure for InterPro Entry



  • Contains 1 Ig-like C2-type (immunoglobulin-like) domain.
  • Contains 1 Ig-like C2-type (immunoglobulin-like) domain.
genes like me logo Genes that share domains with VSTM5: view

No data available for Suggested Antigen Peptide Sequences for VSTM5 Gene

Function for VSTM5 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for VSTM5 Gene

Localization for VSTM5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for VSTM5 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

Jensen Localization Image for VSTM5 Gene COMPARTMENTS Subcellular localization image for VSTM5 gene
Compartment Confidence
plasma membrane 3
extracellular 1

No data available for Gene Ontology (GO) - Cellular Components for VSTM5 Gene

Pathways & Interactions for VSTM5 Gene

SuperPathways for VSTM5 Gene

No Data Available

Interacting Proteins for VSTM5 Gene

Gene Ontology (GO) - Biological Process for VSTM5 Gene


No data available for Pathways by source and SIGNOR curated interactions for VSTM5 Gene

Drugs & Compounds for VSTM5 Gene

No Compound Related Data Available

Transcripts for VSTM5 Gene

mRNA/cDNA for VSTM5 Gene

(1) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VSTM5 Gene

V-set and transmembrane domain containing 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VSTM5 Gene

No ASD Table

Relevant External Links for VSTM5 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for VSTM5 Gene

mRNA expression in normal human tissues for VSTM5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for VSTM5 Gene

This gene is overexpressed in Brain - Hypothalamus (x6.8), Brain - Frontal Cortex (BA9) (x6.1), Brain - Cortex (x6.0), and Brain - Anterior cingulate cortex (BA24) (x4.2).

SOURCE GeneReport for Unigene cluster for VSTM5 Gene Hs.512252

genes like me logo Genes that share expression patterns with VSTM5: view

Primer Products

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for VSTM5 Gene

Orthologs for VSTM5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for VSTM5 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia VSTM5 35
  • 86.33 (n)
  • 87 (a)
VSTM5 36
  • 90 (a)
(Canis familiaris)
Mammalia VSTM5 35
  • 80 (n)
  • 80 (a)
VSTM5 36
  • 80 (a)
(Mus musculus)
Mammalia Vstm5 35
  • 81.07 (n)
  • 77.89 (a)
Vstm5 16
Vstm5 36
  • 78 (a)
(Rattus norvegicus)
Mammalia Vstm5 35
  • 81.74 (n)
  • 80.4 (a)
(Monodelphis domestica)
Mammalia VSTM5 36
  • 80 (a)
(Ornithorhynchus anatinus)
Mammalia VSTM5 36
  • 72 (a)
(Gallus gallus)
Aves VSTM5 35
  • 66.16 (n)
  • 63.96 (a)
VSTM5 36
  • 63 (a)
(Anolis carolinensis)
Reptilia VSTM5 36
  • 47 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia vstm5 35
  • 58.33 (n)
  • 48.94 (a)
(Danio rerio)
Actinopterygii VSTM5 36
  • 32 (a)
Species with no ortholog for VSTM5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for VSTM5 Gene

Gene Tree for VSTM5 (if available)
Gene Tree for VSTM5 (if available)

Paralogs for VSTM5 Gene

No data available for Paralogs for VSTM5 Gene

Variants for VSTM5 Gene

Sequence variations from dbSNP and Humsavar for VSTM5 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs602703 -- 93,830,106(-) CCCTG(C/T)ACTTC intron-variant
rs634325 -- 93,831,242(+) caggc(A/T)ggtct intron-variant
rs592928 -- 93,845,547(+) GAGTC(A/G)TTTCC intron-variant
rs612398 -- 93,847,756(+) AGCCC(A/G)TAAGT intron-variant
rs636482 -- 93,825,142(+) tattc(A/G)ggatc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for VSTM5 Gene

Variant ID Type Subtype PubMed ID
nsv898173 CNV Loss 21882294
nsv898181 CNV Gain 21882294
nsv898182 CNV Gain 21882294
esv2744923 CNV Deletion 23290073
nsv826039 CNV Loss 20364138
esv1952279 CNV Deletion 18987734
esv3250 CNV Deletion 18987735
esv2744924 CNV Deletion 23290073

Variation tolerance for VSTM5 Gene

Gene Damage Index Score: 3.50; 55.35% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for VSTM5 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for VSTM5 Gene

Disorders for VSTM5 Gene

Relevant External Links for VSTM5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for VSTM5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VSTM5 Gene

Publications for VSTM5 Gene

  1. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 2 3 4 67

Products for VSTM5 Gene

Sources for VSTM5 Gene

Back to Top