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Aliases for VSIG10L Gene

Aliases for VSIG10L Gene

  • V-Set And Immunoglobulin Domain Containing 10 Like 2 3

External Ids for VSIG10L Gene

Summaries for VSIG10L Gene

GeneCards Summary for VSIG10L Gene

VSIG10L (V-Set And Immunoglobulin Domain Containing 10 Like) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VSIG10L Gene

Genomics for VSIG10L Gene

Genomic Location for VSIG10L Gene

Start:
51,331,536 bp from pter
End:
51,342,124 bp from pter
Size:
10,589 bases
Orientation:
Minus strand

Genomic View for VSIG10L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for VSIG10L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VSIG10L Gene

No data available for Regulatory Elements for VSIG10L Gene

Proteins for VSIG10L Gene

  • Protein details for VSIG10L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86VR7-VS10L_HUMAN
    Recommended name:
    V-set and immunoglobulin domain-containing protein 10-like
    Protein Accession:
    Q86VR7
    Secondary Accessions:

    Protein attributes for VSIG10L Gene

    Size:
    867 amino acids
    Molecular mass:
    91625 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for VSIG10L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for VSIG10L Gene

Proteomics data for VSIG10L Gene at MOPED

Post-translational modifications for VSIG10L Gene

  • Glycosylation at Asn32, Asn88, Asn96, Asn144, Asn423, Asn487, Asn641, and Asn650

Other Protein References for VSIG10L Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for VSIG10L Gene

Domains for VSIG10L Gene

Gene Families for VSIG10L Gene

HGNC:
  • IGD :Immunoglobulin superfamily / Immunoglobulin-like domain containing

Protein Domains for VSIG10L Gene

UniProtKB/Swiss-Prot:

VS10L_HUMAN
Domain:
  • Contains 2 Ig-like C2-type (immunoglobulin-like) domains.:
    • Q86VR7
genes like me logo Genes that share domains with VSIG10L: view

Function for VSIG10L Gene

Gene Ontology (GO) - Molecular Function for VSIG10L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with VSIG10L: view

Phenotypes for VSIG10L Gene

GenomeRNAi human phenotypes for VSIG10L:
genes like me logo Genes that share phenotypes with VSIG10L: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for VSIG10L Gene

Localization for VSIG10L Gene

Subcellular locations from UniProtKB/Swiss-Prot for VSIG10L Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for VSIG10L Gene COMPARTMENTS Subcellular localization image for VSIG10L gene
Compartment Confidence
plasma membrane 3
cytosol 1
extracellular 1
mitochondrion 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for VSIG10L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with VSIG10L: view

Pathways for VSIG10L Gene

SuperPathways for VSIG10L Gene

No Data Available

Interacting Proteins for VSIG10L Gene

Gene Ontology (GO) - Biological Process for VSIG10L Gene

None

No data available for Pathways by source for VSIG10L Gene

Transcripts for VSIG10L Gene

mRNA/cDNA for VSIG10L Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VSIG10L Gene

V-set and immunoglobulin domain containing 10 like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VSIG10L Gene

No ASD Table

Relevant External Links for VSIG10L Gene

GeneLoc Exon Structure for
VSIG10L
ECgene alternative splicing isoforms for
VSIG10L

Expression for VSIG10L Gene

mRNA expression in normal human tissues for VSIG10L Gene

mRNA differential expression in normal tissues according to GTEx for VSIG10L Gene

This gene is overexpressed in Esophagus - Mucosa (20.7), Vagina (6.0), and Cervix - Ectocervix (5.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for VSIG10L Gene

SOURCE GeneReport for Unigene cluster for VSIG10L Gene Hs.293236

genes like me logo Genes that share expressions with VSIG10L: view

Orthologs for VSIG10L Gene

This gene was present in the common ancestor of chordates.

Orthologs for VSIG10L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia VSIG10L 36
  • 98.15 (n)
  • 97.29 (a)
VSIG10L 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia VSIG10L 36
  • 80.53 (n)
  • 73.56 (a)
VSIG10L 37
  • 69 (a)
OneToOne
dog
(Canis familiaris)
Mammalia VSIG10L 36
  • 82.76 (n)
  • 78.19 (a)
VSIG10L 37
  • 77 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Vsig10l 36
  • 77.1 (n)
  • 73.26 (a)
Vsig10l 16
Vsig10l 37
  • 69 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia VSIG10L 37
  • 55 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia VSIG10L 37
  • 56 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Vsig10l 36
  • 76.33 (n)
  • 71.85 (a)
lizard
(Anolis carolinensis)
Reptilia VSIG10L 37
  • 37 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii LOC100333975 36
  • 41.81 (n)
  • 31.14 (a)
VSIG10L 37
  • 24 (a)
OneToOne
Species with no ortholog for VSIG10L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for VSIG10L Gene

ENSEMBL:
Gene Tree for VSIG10L (if available)
TreeFam:
Gene Tree for VSIG10L (if available)

Paralogs for VSIG10L Gene

No data available for Paralogs for VSIG10L Gene

Variants for VSIG10L Gene

Sequence variations from dbSNP and Humsavar for VSIG10L Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs878350 -- 51,343,707(+) tgcca(C/T)gttgg upstream-variant-2KB
rs1035454 -- 51,342,302(+) CCTCA(C/T)CCCAC upstream-variant-2KB
rs1048387 -- 51,331,911(-) ACCAT(C/T)TTAGA utr-variant-3-prime
rs2011612 -- 51,343,784(+) caggc(A/G)tgagc upstream-variant-2KB
rs3077104 -- 51,336,781(-) caaaa(-/C/CA)aaaaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for VSIG10L Gene

Variant ID Type Subtype PubMed ID
nsv912294 CNV Gain 21882294

Relevant External Links for VSIG10L Gene

HapMap Linkage Disequilibrium report
VSIG10L

Disorders for VSIG10L Gene

No disorders were found for VSIG10L Gene.

No data available for UniProtKB/Swiss-Prot for VSIG10L Gene

Publications for VSIG10L Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for VSIG10L Gene

Sources for VSIG10L Gene

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