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Aliases for VPS9D1 Gene

Aliases for VPS9D1 Gene

  • VPS9 Domain Containing 1 2 3
  • C16orf7 3 4
  • Chromosome 16 Open Reading Frame 7 2
  • VPS9 Domain-Containing Protein 1 3
  • Protein ATP-BL 4
  • ATP-BL 3
  • ATPBL 4

External Ids for VPS9D1 Gene

Previous HGNC Symbols for VPS9D1 Gene

  • C16orf7

Previous GeneCards Identifiers for VPS9D1 Gene

  • GC16M089774

Summaries for VPS9D1 Gene

GeneCards Summary for VPS9D1 Gene

VPS9D1 (VPS9 Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include transporter activity and GTPase activator activity.

Gene Wiki entry for VPS9D1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VPS9D1 Gene

Genomics for VPS9D1 Gene

Genomic Location for VPS9D1 Gene

Start:
89,707,133 bp from pter
End:
89,720,986 bp from pter
Size:
13,854 bases
Orientation:
Minus strand

Genomic View for VPS9D1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for VPS9D1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VPS9D1 Gene

No data available for Regulatory Elements for VPS9D1 Gene

Proteins for VPS9D1 Gene

  • Protein details for VPS9D1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y2B5-VP9D1_HUMAN
    Recommended name:
    VPS9 domain-containing protein 1
    Protein Accession:
    Q9Y2B5
    Secondary Accessions:

    Protein attributes for VPS9D1 Gene

    Size:
    631 amino acids
    Molecular mass:
    68956 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA76711.1; Type=Frameshift; Positions=Several; Evidence={ECO:0000305};

    Alternative splice isoforms for VPS9D1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for VPS9D1 Gene

Proteomics data for VPS9D1 Gene at MOPED

Post-translational modifications for VPS9D1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for VPS9D1 Gene

No data available for DME Specific Peptides for VPS9D1 Gene

Domains for VPS9D1 Gene

Protein Domains for VPS9D1 Gene

Graphical View of Domain Structure for InterPro Entry

Q9Y2B5

UniProtKB/Swiss-Prot:

VP9D1_HUMAN :
  • Q9Y2B5
Domain:
  • Contains 1 VPS9 domain.
genes like me logo Genes that share domains with VPS9D1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for VPS9D1 Gene

Function for VPS9D1 Gene

Gene Ontology (GO) - Molecular Function for VPS9D1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity IEA --
GO:0005215 transporter activity TAS 10231027
genes like me logo Genes that share ontologies with VPS9D1: view

Phenotypes for VPS9D1 Gene

GenomeRNAi human phenotypes for VPS9D1:
genes like me logo Genes that share phenotypes with VPS9D1: view

miRNA for VPS9D1 Gene

miRTarBase miRNAs that target VPS9D1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for VPS9D1 Gene

Localization for VPS9D1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VPS9D1 Gene

Pathways for VPS9D1 Gene

SuperPathways for VPS9D1 Gene

No Data Available

Interacting Proteins for VPS9D1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000374037%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: Q9Y2B5-VP9D1_HUMAN ENSP00000374037 for VPS9D1 Gene via MINT STRING I2D

Gene Ontology (GO) - Biological Process for VPS9D1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015986 ATP synthesis coupled proton transport TAS 10231027
GO:0043547 positive regulation of GTPase activity IEA --
genes like me logo Genes that share ontologies with VPS9D1: view

No data available for Pathways by source for VPS9D1 Gene

Transcripts for VPS9D1 Gene

Unigene Clusters for VPS9D1 Gene

VPS9 domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VPS9D1 Gene

No ASD Table

Relevant External Links for VPS9D1 Gene

GeneLoc Exon Structure for
VPS9D1
ECgene alternative splicing isoforms for
VPS9D1

Expression for VPS9D1 Gene

mRNA expression in normal human tissues for VPS9D1 Gene

mRNA differential expression in normal tissues according to GTEx for VPS9D1 Gene

This gene is overexpressed in Whole Blood (7.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for VPS9D1 Gene

SOURCE GeneReport for Unigene cluster for VPS9D1 Gene Hs.164410

mRNA Expression by UniProt/SwissProt for VPS9D1 Gene

Q9Y2B5-VP9D1_HUMAN
Tissue specificity: Ubiquitous.
genes like me logo Genes that share expressions with VPS9D1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for VPS9D1 Gene

Orthologs for VPS9D1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for VPS9D1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia VPS9D1 35
  • 92.25 (n)
  • 90.26 (a)
VPS9D1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia VPS9D1 35
  • 83.64 (n)
  • 85.17 (a)
VPS9D1 36
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia VPS9D1 35
  • 82.78 (n)
  • 84.42 (a)
VPS9D1 36
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Vps9d1 35
  • 81.34 (n)
  • 84.05 (a)
Vps9d1 16
Vps9d1 36
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia VPS9D1 36
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia VPS9D1 36
  • 69 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Vps9d1 35
  • 80.96 (n)
  • 83.04 (a)
chicken
(Gallus gallus)
Aves C11H16ORF7 35
  • 68.5 (n)
  • 65.98 (a)
VPS9D1 36
  • 61 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia VPS9D1 36
  • 64 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.29400 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.15453 35
vps9d1 35
  • 58.08 (n)
  • 56.69 (a)
zebrafish
(Danio rerio)
Actinopterygii idibd5127 35
vps9d1 35
  • 60 (n)
  • 57.52 (a)
vps9d1 36
  • 52 (a)
OneToOne
Species with no ortholog for VPS9D1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for VPS9D1 Gene

ENSEMBL:
Gene Tree for VPS9D1 (if available)
TreeFam:
Gene Tree for VPS9D1 (if available)

Paralogs for VPS9D1 Gene

No data available for Paralogs for VPS9D1 Gene

Variants for VPS9D1 Gene

Sequence variations from dbSNP and Humsavar for VPS9D1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs745710 -- 89,706,752(+) CTTCT(A/G)TGCAC downstream-variant-500B
rs891107 -- 89,707,268(-) CCCTT(A/G)CTCAC utr-variant-3-prime
rs1110331 -- 89,707,988(-) TCGTT(C/T)AGATG intron-variant
rs3751694 -- 89,707,478(-) GAGCC(A/G)GCCAG utr-variant-3-prime
rs11641176 -- 89,708,405(+) CCCCC(A/C)CCCTG intron-variant

Relevant External Links for VPS9D1 Gene

HapMap Linkage Disequilibrium report
VPS9D1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for VPS9D1 Gene

Disorders for VPS9D1 Gene

No disorders were found for VPS9D1 Gene.

No data available for UniProtKB/Swiss-Prot for VPS9D1 Gene

Publications for VPS9D1 Gene

  1. Isolation and mapping of putative b subunit of human ATPase (ATP-BL) from human leukocytes. (PMID: 10231027) Sugimoto J. … Isobe M. (DNA Res. 1999) 2 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Genomic annotation of 15,809 ESTs identified from pooled early gestation human eyes. (PMID: 16368877) Choy K.W. … Pang C.P. (Physiol. Genomics 2006) 3
  4. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  5. TLR8-dependent TNF-(alpha) overexpression in Fanconi anemia group C cells. (PMID: 19850743) Vanderwerf S.M. … Bagby G.C. (Blood 2009) 3

Products for VPS9D1 Gene

Sources for VPS9D1 Gene

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