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Aliases for VPS72 Gene

Aliases for VPS72 Gene

  • Vacuolar Protein Sorting 72 Homolog 2 3
  • Transcription Factor-Like 1 2 3 4
  • Vacuolar Protein Sorting 72 Homolog (S. Cerevisiae) 2 5
  • TCFL1 3 4
  • YL1 3 4
  • Vacuolar Protein Sorting 72 (Yeast) 2
  • Transformation Suppressor Gene YL-1 3
  • Protein YL-1 4
  • CFL1 3
  • Swc2 3
  • YL-1 3

External Ids for VPS72 Gene

Previous HGNC Symbols for VPS72 Gene

  • TCFL1

Previous GeneCards Identifiers for VPS72 Gene

  • GC01M147963
  • GC01M149415
  • GC01M122527

Summaries for VPS72 Gene

Entrez Gene Summary for VPS72 Gene

  • The protein encoded by this gene is a shared subunit of two multi-component complexes, the histone acetyltransferase complex TRRAP/TIP60 as well as the chromatin remodeling SRCAP-containing complex. The TRRAP/TIP60 complex acetylates nucleosomal histones important for transcriptional regulation, double strand DNA break repair and apoptosis. The SRCAP-containing complex catalyzes the exchange of histone H2A with the histone variant Htz1 (H2AFZ) into nucleosomes. This protein may be responsible for binding H2AFZ, which has a role in chromosome segregation. This protein may also have a role in regulating long-term hematopoietic stem cell activity. Alternative splicing results in multiple transcript variants that encode different protein isoforms. [provided by RefSeq, Aug 2012]

GeneCards Summary for VPS72 Gene

VPS72 (Vacuolar Protein Sorting 72 Homolog) is a Protein Coding gene. Among its related pathways are Chromatin organization.

UniProtKB/Swiss-Prot for VPS72 Gene

  • Could be a DNA-binding transcriptional regulator. May be involved in chromatin modification and remodeling.

Gene Wiki entry for VPS72 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VPS72 Gene

Genomics for VPS72 Gene

Regulatory Elements for VPS72 Gene

Enhancers for VPS72 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around VPS72 on UCSC Golden Path with GeneCards custom track

Genomic Location for VPS72 Gene

Chromosome:
1
Start:
151,169,987 bp from pter
End:
151,195,321 bp from pter
Size:
25,335 bases
Orientation:
Minus strand

Genomic View for VPS72 Gene

Genes around VPS72 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VPS72 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VPS72 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VPS72 Gene

Proteins for VPS72 Gene

  • Protein details for VPS72 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15906-VPS72_HUMAN
    Recommended name:
    Vacuolar protein sorting-associated protein 72 homolog
    Protein Accession:
    Q15906
    Secondary Accessions:
    • A6NLK9
    • A6PW55
    • Q53GJ2
    • Q5U0R4

    Protein attributes for VPS72 Gene

    Size:
    364 amino acids
    Molecular mass:
    40594 Da
    Quaternary structure:
    • Component of the NuA4 histone acetyltransferase complex which contains the catalytic subunit KAT5/TIP60 and the subunits EP400, TRRAP/PAF400, BRD8/SMAP, EPC1, DMAP1/DNMAP1, RUVBL1/TIP49, RUVBL2, ING3, actin, ACTL6A/BAF53A, MORF4L1/MRG15, MORF4L2/MRGX, MRGBP, YEATS4/GAS41 and VPS72/YL1. Component of a NuA4-related complex which contains EP400, TRRAP/PAF400, SRCAP, BRD8/SMAP, EPC1, DMAP1/DNMAP1, RUVBL1/TIP49, RUVBL2, actin, ACTL6A/BAF53A, VPS72 and YEATS4/GAS41. Also part of a multiprotein complex which contains SRCAP and which binds to H2AFZ/H2AZ.

    Alternative splice isoforms for VPS72 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for VPS72 Gene

Proteomics data for VPS72 Gene at MOPED

Post-translational modifications for VPS72 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for VPS72 Gene

No data available for DME Specific Peptides for VPS72 Gene

Domains & Families for VPS72 Gene

Protein Domains for VPS72 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for VPS72 Gene

Graphical View of Domain Structure for InterPro Entry

Q15906

UniProtKB/Swiss-Prot:

VPS72_HUMAN :
  • Belongs to the VPS72/YL1 family.
Family:
  • Belongs to the VPS72/YL1 family.
genes like me logo Genes that share domains with VPS72: view

No data available for Gene Families for VPS72 Gene

Function for VPS72 Gene

Molecular function for VPS72 Gene

UniProtKB/Swiss-Prot Function:
Could be a DNA-binding transcriptional regulator. May be involved in chromatin modification and remodeling.
genes like me logo Genes that share phenotypes with VPS72: view

Animal Models for VPS72 Gene

MGI Knock Outs for VPS72:

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for VPS72 Gene

Localization for VPS72 Gene

Subcellular locations from UniProtKB/Swiss-Prot for VPS72 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for VPS72 Gene COMPARTMENTS Subcellular localization image for VPS72 gene
Compartment Confidence
nucleus 5
cytoskeleton 2
cytosol 1

No data available for Gene Ontology (GO) - Cellular Components for VPS72 Gene

Pathways & Interactions for VPS72 Gene

genes like me logo Genes that share pathways with VPS72: view

Pathways by source for VPS72 Gene

Gene Ontology (GO) - Biological Process for VPS72 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0035019 somatic stem cell population maintenance IEA --
GO:0043486 histone exchange IBA --
genes like me logo Genes that share ontologies with VPS72: view

No data available for SIGNOR curated interactions for VPS72 Gene

Drugs & Compounds for VPS72 Gene

No Compound Related Data Available

Transcripts for VPS72 Gene

Unigene Clusters for VPS72 Gene

Vacuolar protein sorting 72 homolog (S. cerevisiae):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VPS72 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b · 6c
SP1: -
SP2:
SP3:

Relevant External Links for VPS72 Gene

GeneLoc Exon Structure for
VPS72
ECgene alternative splicing isoforms for
VPS72

Expression for VPS72 Gene

mRNA expression in normal human tissues for VPS72 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for VPS72 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (18.5), Blymphocyte (8.4), CD8 Tcells (6.9), and Fetal Brain (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for VPS72 Gene



SOURCE GeneReport for Unigene cluster for VPS72 Gene Hs.2430

genes like me logo Genes that share expression patterns with VPS72: view

Protein tissue co-expression partners for VPS72 Gene

- Elite partner

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for VPS72 Gene

Orthologs for VPS72 Gene

This gene was present in the common ancestor of animals.

Orthologs for VPS72 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia VPS72 35
  • 91.58 (n)
  • 96.43 (a)
VPS72 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia VPS72 35
  • 90.84 (n)
  • 98.08 (a)
VPS72 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Vps72 35
  • 86.9 (n)
  • 96.98 (a)
Vps72 16
Vps72 36
  • 96 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia VPS72 35
  • 99.45 (n)
  • 99.73 (a)
VPS72 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Vps72 35
  • 87.09 (n)
  • 96.7 (a)
oppossum
(Monodelphis domestica)
Mammalia VPS72 36
  • 92 (a)
OneToOne
chicken
(Gallus gallus)
Aves LOC100859689 35
  • 67.96 (n)
  • 72.3 (a)
VPS72 36
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia VPS72 36
  • 61 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.9975 35
vps72 35
  • 63.74 (n)
  • 65.44 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.11940 35
zebrafish
(Danio rerio)
Actinopterygii vps72 35
  • 63.14 (n)
  • 65.26 (a)
vps72 36
  • 59 (a)
OneToMany
VPS72 (2 of 2) 36
  • 57 (a)
OneToMany
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.871 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP001565 35
  • 46.75 (n)
  • 42.72 (a)
fruit fly
(Drosophila melanogaster)
Insecta YL-1 35
  • 50.66 (n)
  • 47.02 (a)
YL-1 36
  • 37 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea C17E4.6 36
  • 28 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10900 36
  • 42 (a)
OneToOne
Species with no ortholog for VPS72:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for VPS72 Gene

ENSEMBL:
Gene Tree for VPS72 (if available)
TreeFam:
Gene Tree for VPS72 (if available)

Paralogs for VPS72 Gene

No data available for Paralogs for VPS72 Gene

Variants for VPS72 Gene

Sequence variations from dbSNP and Humsavar for VPS72 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
VAR_035803 A breast cancer sample
rs4970943 -- 151,183,905(+) ttttt(A/T)aagag intron-variant
rs4970944 -- 151,190,841(+) CCCAC(A/G)TTTTG upstream-variant-2KB
rs4971011 -- 151,185,289(+) CCTGG(C/T)TAATT intron-variant
rs4971012 -- 151,191,364(+) agcag(G/T)gggaa upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for VPS72 Gene

Variant ID Type Subtype PubMed ID
nsv522840 CNV Gain 19592680
dgv2n68 CNV Loss 17160897

Variation tolerance for VPS72 Gene

Residual Variation Intolerance Score: 25% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.01; 20.77% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for VPS72 Gene

Disorders for VPS72 Gene

Relevant External Links for VPS72

Genetic Association Database (GAD)
VPS72
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VPS72

No disorders were found for VPS72 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VPS72 Gene

Publications for VPS72 Gene

  1. Molecular cloning of a novel human cDNA on chromosome 1q21 and its mouse homolog encoding a nuclear protein with DNA-binding ability. (PMID: 7702631) Horikawa I. … Oshimura M. (Biochem. Biophys. Res. Commun. 1995) 2 3 4 67
  2. Forced expression of YL-1 protein suppresses the anchorage-independent growth of Kirsten sarcoma virus-transformed NIH3T3 cells. (PMID: 7664828) Horikawa I. … Oshimura M. (Exp. Cell Res. 1995) 3 23
  3. Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes. (PMID: 25281560) Lambert J.P. … Gingras A.C. (J Proteomics 2015) 3
  4. Systematic identification of molecular links between core and candidate genes in breast cancer. (PMID: 25640309) Arroyo R. … Aloy P. (J. Mol. Biol. 2015) 3
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3

Products for VPS72 Gene

Sources for VPS72 Gene

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