VPS37C Gene
protein-coding GIFtS: 55
GCID: GC11M060897
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|
vacuolar protein sorting 37 homolog C (S. cerevisiae)(Previous name: vacuolar protein sorting 37C (yeast) )
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Aliases
for VPS37C gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Vacuolar Protein Sorting 37 Homolog C (S. Cerevisiae)1 2 | | Vacuolar Protein Sorting 37C (Yeast)1 | | ESCRT-I Complex Subunit VPS37C2 3 | | Vacuolar Protein Sorting 37C2 | | HVps37C1 | | Vacuolar Protein Sorting-Associated Protein 37C2 | | FLJ208471 | | PML393 |
Export aliases for VPS37C gene to outside databasesPrevious GC identifers: GC11M060655 GC11M057243 |
Summaries
for VPS37C gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for VPS37C:
VPS37C is a subunit of ESCRT-I (endosomal sorting complex required for transport I), a complex in the class E vacuolarprotein sorting (VPS) pathway required for sorting ubiquitinated transmembrane proteins into internal vesicles ofmultivesicular bodies (Eastman et al., 2005 (PubMed 15509564)).(supplied by OMIM, Mar 2008)
UniProtKB/Swiss-Prot: VP37C_HUMAN, A5D8V6Function: Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Required for the sorting ofendocytic ubiquitinated cargos into multivesicular bodies. May be involved in cell growth and differentiation
|
Genomic Views
for VPS37C gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000011.9 NC_018922.1 NT_167190.1
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the VPS37C gene promoter:
Spz1 Pbx1a AP-1 MEF-2 Chx10 Lmo2 aMEF-2 Tal-1beta MRF-2 E47
Other transcription factors
Search SABiosciences Chromatin IP Primers for VPS37C
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat VPS37C |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 11q12.2 Ensembl cytogenetic band: 11q12.2 HGNC cytogenetic band: 11q12.2VPS37C Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11M060897: view genomic region
(about GC identifiers)
Start:
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60,897,728 bp from pter |
End:
|
60,929,089 bp from pter |
Size:
|
31,362 bases |
Orientation:
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minus strand |
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Proteins
for VPS37C gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: VP37C_HUMAN, A5D8V6 (See
protein sequence)Recommended Name: Vacuolar protein sorting-associated protein 37C Size: 355 amino acids; 38659 Da
Subunit: Component of the ESCRT-I complex (endosomal sorting complex required for transport I) which consists ofTSG101, VPS28, a VPS37 protein (VPS37A to -D) and MVB12A or MVB12B in a 1:1:1:1 stoechiometry. Interacts with TSG101,VPS28, MVB12A and MVB12B. Interacts with HGS and STAM2. Interacts with CEP55
Subcellular location: Late endosome membrane; Peripheral membrane protein (Probable). Note=Probably associates withmembranes. Recruited to the plasma membrane by HIV-1
Sequence caution: Sequence=CAD38936.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Secondary accessions: Q8N3K4Explore the universe of human proteins at neXtProt for VPS37C: NX_A5D8V6
Post-translational modifications:
Phosphorylated by TBK11
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_A5D8V6
VPS37C Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_060436.4
ENSEMBL proteins: ENSP00000301765 ENSP00000446013 Reactome Protein details: A5D8V6
Human Recombinant Protein Products:
Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table
VPS37C for ontologies About GeneDecksing
VPS37C Antibody Products:
Assay Products for VPS37C: |
Protein
Domains /
Families
for VPS37C gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
VPS37C for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry A5D8V6ProtoNet protein and cluster: A5D8V6 UniProtKB/Swiss-Prot: VP37C_HUMAN, A5D8V6Similarity: Belongs to the VPS37 familySimilarity: Contains 1 VPS37 C-terminal domain |
Function
for VPS37C gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: VP37C_HUMAN, A5D8V6Function: Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Required for the sorting ofendocytic ubiquitinated cargos into multivesicular bodies. May be involved in cell growth and differentiation
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for VPS37C (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for VPS37C (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for VPS37C |
1 GenomeRNAi human phenotype for VPS37C:
|
Pathways & Interactions
for VPS37C gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways - 5/6 super-pathways (see all 6) About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Signal Transduction | | | 2 | Late Phase of HIV Life Cycle | | | 3 | HIV Infection | | | 4 | Disease | | | 5 | Membrane Trafficking | |
Pathway sources
See GeneCards unified pathways
Show all pathways
5/9 
Reactome Pathways for VPS37C (see all 9)
1 
Kegg Pathway (Kegg details for VPS37C):
VPS37C for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for VPS37C
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
5/29 Interacting proteins for VPS37C (A5D8V62, 3 ENSP000003017654) via UniProtKB, MINT, STRING, and/or I2D (see all 29)About this table
Gene Ontology (GO): 5 biological process terms (GO ID links to tree view): About this table
VPS37C for ontologies About GeneDecksing
|
Drugs & Compounds
for VPS37C gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for VPS37C
Search CenterWatch for drugs/clinical trials and news about VPS37C / VP37C
|
Transcripts
for VPS37C gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for VPS37C gene: NM_017966.4 Unigene Cluster for VPS37C: Vacuolar protein sorting 37 homolog C (S. cerevisiae) Hs.523715 [show with all ESTs]Unigene Representative Sequence: AL8342614 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000301765(uc001nqv.1) ENST00000538036 ENST00000536000(uc001nqw.1)
ENST00000535818
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for VPS37C (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for VPS37C (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: VPS37C (NM_017966) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for VPS37C | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat VPS37C |
Additional cDNA sequence: AK000854.1 AK097326.1 AK302384.1 AL834261.1 BC005805.2 BC062604.1 BC141827.1 BC142702.1 CR457250.1 9 DOTS entries: DT.99977975 DT.413054 DT.120716071 DT.86859494 DT.91830877 DT.95234719 DT.120716242 DT.102830960 DT.120716148 24/130 AceView cDNA sequences (see all 130): BQ070499 BC005805 BM450171 BM476867 BU739661 BE857256 AI628490 BU501884 CK903982 BM720494 BQ072093 AI868988 AA357663 BQ961670 BU151366 BM987525 AA354592 AL834261 BF513919 BM702263 BU069043 AI804355 BM719789 AI669525
GeneLoc Exon Structure
|
Expression
for VPS37C gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| VPS37C expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TTCAGTAATA
About this image
See VPS37C Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for VPS37C
SOURCE GeneReport for Unigene cluster: Hs.523715
SABiosciences Custom PCR Arrays for VPS37C
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for VPS37C
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat VPS37C | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat VPS37C | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat VPS37C | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for VPS37C |
Orthologs
for VPS37C gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for VPS37C gene from 5/18 species (see all 18) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
VPS37C6 |
Uncharacterized protein |
61(a) |
1 ↔ 1 |
5(357534-359955) |
lizard
(Anolis carolinensis) |
Reptilia |
VPS37C6 |
-- |
60(a) |
1 ↔ 1 |
GL343235.1(670992-674366) |
zebrafish
(Danio rerio) |
Actinopterygii |
zgc:1539961 |
zgc:153996 |
49.68(n)
40.32(a) |
|
777738 NM_001077785.1 NP_001071253.1 |
fruit fly
(Drosophila melanogaster) |
Insecta |
CG11156 |
-- |
28(a) |
1 → many |
3R(1051882-1053248) |
worm
(Caenorhabditis elegans) |
Secernentea |
vps-376 |
related to yeast Vacuolar Protein Sorting factor f... |
24(a) |
1 → many |
V(5592691-5593592) |
ENSEMBL Gene Tree for VPS37C (if available)
TreeFam Gene Tree for VPS37C (if available) |
Paralogs
for VPS37C gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for VPS37C gene
- VPS37B2 VPS37D2 VPS37A2
3 SIMAP similar genes for VPS37C using alignment to 2 protein entries: VP37C_HUMAN (see all proteins):VPS37B VPS37A VPS37D
VPS37C for paralogs About GeneDecksing
|
Genomic Variants
for VPS37C gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 11 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for VPS37C (60897728 - 60929089 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 3 variations for VPS37C
3 CNVs: 3854 4747 30555 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing VPS37C |
|
Disorders
/ Diseases
for VPS37C gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
VPS37C for disorders About GeneDecksing
OMIM gene information: 610038
OMIM disorders: --
1  disease for VPS37C: About MalaCardswilliams-beuren syndrome
Human Genome Epidemiology (HuGE) Navigator: VPS37C (2 documents)
Export disorders for VPS37C gene to outside databases
|
Publications
for VPS37C gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for VPS37C gene, integrated from 9 sources (see all 19):
(articles sorted by number of sources associating them with VPS37C) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Identification of human VPS37C, a component of endosomal sorting complex required for transport-I important for viral budding. (PubMed id 15509564)1, 2, 3, 9 Eastman S.W.... Bieniasz P.D. (2005)
- Human ESCRT and ALIX proteins interact with proteins of the midbody and function in cytokinesis. (PubMed id 17853893)1, 2 Morita E....Sundquist W.I. (2007)
- TANK-binding kinase 1 attenuates PTAP-dependent retro viral budding through targeting endosomal sorting complex required for transpor t-I. (PubMed id 21270402)2 Da Q....Tang H. (2011)
- Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
- Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
- Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
- UBAP1 is a component of an endosome-specific ESCRT-I c omplex that is essential for MVB sorting. (PubMed id 21757351)1 Stefani F....Woodman P. (2011)
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
- Systematic analysis of human protein complexes identi fies chromosome segregation proteins. (PubMed id 20360068)1 Hutchins J.R....Peters J.M. (2010)
- Association between genetic variants in VEGF, ERCC3 a nd occupational benzene haematotoxicity. (PubMed id 19773279)1 Hosgood H.D....Lan Q. (2009)
|
External Searches for VPS37C gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing VPS37C gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing VPS37C gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing VPS37C gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for VPS37C | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for VPS37C gene:
Search GeneIP for patents involving VPS37C
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for VPS37C gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for VPS37C |
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