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Aliases for VPS26BP1 Gene

Subcategory (RNA class) for VPS26BP1 Gene

lncRNA

Aliases for VPS26BP1 Gene

  • VPS26B Pseudogene 1 2 3 5
  • Vacuolar Protein Sorting 26 Homolog B (S. Pombe) Pseudogene 1 2

External Ids for VPS26BP1 Gene

ORGUL Members for VPS26BP1 Gene

Summaries for VPS26BP1 Gene

GeneCards Summary for VPS26BP1 Gene

VPS26BP1 (VPS26B Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VPS26BP1 Gene

Genomics for VPS26BP1 Gene

Regulatory Elements for VPS26BP1 Gene

Enhancers for VPS26BP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F047961 0.9 Ensembl ENCODE 0.8 -0.9 -920 1.2 ZFP64 BMI1 ZNF101 GATA3 ELK1 RFX1 STAT1 ZBTB11 MNT REST CDC25A NDUFB1P1 RNU7-128P DHX30 ENSG00000260236 KLHL18 VPS26BP1 ENSG00000270285
GH03F047950 0.6 FANTOM5 0.4 +10.5 10535 0.1 HNF1A CDC25A RNU7-128P NDUFB1P1 SMARCC1 ATRIP CCDC51 VPS26BP1 ENSG00000199591 GC03M047931
GH03F047983 0.7 Ensembl ENCODE 0.3 -23.7 -23710 2.0 PKNOX1 JUN INSM2 KLF17 ZNF2 GTF3C2 POLR3A ZNF600 FOS KLF8 NME6 MRPS18AP1 ZNF589 BOLA2P2 RNU7-128P NDUFB1P1 CDC25A TMEM89 SMARCC1 VPS26BP1
GH03F047989 0.9 ENCODE 0.3 -29.0 -29007 1.1 PKNOX1 SIN3A DNMT3B ZNF2 RAD21 RFX5 CHAMP1 SLC30A9 ZNF121 ZNF143 NDUFB1P1 RNU7-128P CDC25A VPS26BP1 ENSG00000270285
GH03F048033 1.2 Ensembl ENCODE 0.2 -73.3 -73325 1.6 ATF1 INSM2 FEZF1 ZNF2 ZEB1 ZNF366 SP3 OVOL3 TSHZ1 ZEB2 NDUFB1P1 RNU7-128P CDC25A KLHL18 ENSG00000270285 VPS26BP1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around VPS26BP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for VPS26BP1 Gene

Chromosome:
3
Start:
47,960,327 bp from pter
End:
47,961,081 bp from pter
Size:
755 bases
Orientation:
Minus strand

Genomic View for VPS26BP1 Gene

Genes around VPS26BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VPS26BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VPS26BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VPS26BP1 Gene

Proteins for VPS26BP1 Gene

Post-translational modifications for VPS26BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VPS26BP1 Gene

Domains & Families for VPS26BP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VPS26BP1 Gene

Function for VPS26BP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VPS26BP1 Gene

Localization for VPS26BP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VPS26BP1 Gene

Pathways & Interactions for VPS26BP1 Gene

SuperPathways for VPS26BP1 Gene

No Data Available

Interacting Proteins for VPS26BP1 Gene

Gene Ontology (GO) - Biological Process for VPS26BP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VPS26BP1 Gene

Transcripts for VPS26BP1 Gene

mRNA/cDNA for VPS26BP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VPS26BP1 Gene

No ASD Table

Relevant External Links for VPS26BP1 Gene

GeneLoc Exon Structure for
VPS26BP1
ECgene alternative splicing isoforms for
VPS26BP1

Expression for VPS26BP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for VPS26BP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of VPS26BP1 Gene:

VPS26BP1
genes like me logo Genes that share expression patterns with VPS26BP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for VPS26BP1 Gene

Orthologs for VPS26BP1 Gene

Evolution for VPS26BP1 Gene

ENSEMBL:
Gene Tree for VPS26BP1 (if available)
TreeFam:
Gene Tree for VPS26BP1 (if available)

No data available for Orthologs for VPS26BP1 Gene

Paralogs for VPS26BP1 Gene

No data available for Paralogs for VPS26BP1 Gene

Variants for VPS26BP1 Gene

Relevant External Links for VPS26BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VPS26BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VPS26BP1 Gene

Disorders for VPS26BP1 Gene

No disorders were found for VPS26BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for VPS26BP1 Gene

Publications for VPS26BP1 Gene

No publications were found for VPS26BP1 Gene.

Products for VPS26BP1 Gene

Sources for VPS26BP1 Gene

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