Free for academic non-profit institutions. Other users need a Commercial license

Aliases for VPS26AP1 Gene

Subcategory (RNA class) for VPS26AP1 Gene

lncRNA

Aliases for VPS26AP1 Gene

  • VPS26A Pseudogene 1 2 3 5
  • Vacuolar Protein Sorting 26 Homolog A (S. Pombe) Pseudogene 1 2

External Ids for VPS26AP1 Gene

ORGUL Members for VPS26AP1 Gene

Previous GeneCards Identifiers for VPS26AP1 Gene

  • GC03P113640

Summaries for VPS26AP1 Gene

GeneCards Summary for VPS26AP1 Gene

VPS26AP1 (VPS26A Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for VPS26AP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VPS26AP1 Gene

Genomics for VPS26AP1 Gene

Regulatory Elements for VPS26AP1 Gene

Enhancers for VPS26AP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H113912 0.8 ENCODE 0.4 -5.9 -5948 0 ELF3 CTCF FOXA2 RB1 JUN BATF RAD21 FOSL1 FOXK2 SMC3 QTRT2 CCDC191 GRAMD1C VPS26AP1 LOC100420528
GH03H113897 1 Ensembl ENCODE 0.3 -21.6 -21628 1 FOXA2 TAF1 MAX YY1 CTBP1 GATA3 SCRT2 ZBTB20 SCRT1 REST LOC100420528 VPS26AP1
GH03H113919 0.3 FANTOM5 0.7 +0.7 693 0 VPS26AP1 ENSG00000273394
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around VPS26AP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for VPS26AP1 Gene

Chromosome:
3
Start:
113,919,222 bp from pter
End:
113,920,200 bp from pter
Size:
979 bases
Orientation:
Plus strand

Genomic View for VPS26AP1 Gene

Genes around VPS26AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VPS26AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VPS26AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VPS26AP1 Gene

Proteins for VPS26AP1 Gene

Post-translational modifications for VPS26AP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VPS26AP1 Gene

Domains & Families for VPS26AP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VPS26AP1 Gene

Function for VPS26AP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VPS26AP1 Gene

Localization for VPS26AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VPS26AP1 Gene

Pathways & Interactions for VPS26AP1 Gene

SuperPathways for VPS26AP1 Gene

No Data Available

Interacting Proteins for VPS26AP1 Gene

Gene Ontology (GO) - Biological Process for VPS26AP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VPS26AP1 Gene

Drugs & Compounds for VPS26AP1 Gene

No Compound Related Data Available

Transcripts for VPS26AP1 Gene

mRNA/cDNA for VPS26AP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VPS26AP1 Gene

No ASD Table

Relevant External Links for VPS26AP1 Gene

GeneLoc Exon Structure for
VPS26AP1
ECgene alternative splicing isoforms for
VPS26AP1

Expression for VPS26AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VPS26AP1 Gene

mRNA differential expression in normal tissues according to GTEx for VPS26AP1 Gene

This gene is overexpressed in Pituitary (x5.3), Skin - Sun Exposed (Lower leg) (x5.2), Skin - Not Sun Exposed (Suprapubic) (x5.1), and Pancreas (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of VPS26AP1 Gene:

VPS26AP1
genes like me logo Genes that share expression patterns with VPS26AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VPS26AP1 Gene

Orthologs for VPS26AP1 Gene

Evolution for VPS26AP1 Gene

ENSEMBL:
Gene Tree for VPS26AP1 (if available)
TreeFam:
Gene Tree for VPS26AP1 (if available)

No data available for Orthologs for VPS26AP1 Gene

Paralogs for VPS26AP1 Gene

No data available for Paralogs for VPS26AP1 Gene

Variants for VPS26AP1 Gene

Relevant External Links for VPS26AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VPS26AP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VPS26AP1 Gene

Disorders for VPS26AP1 Gene

No disorders were found for VPS26AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for VPS26AP1 Gene

Publications for VPS26AP1 Gene

No publications were found for VPS26AP1 Gene.

Products for VPS26AP1 Gene

Sources for VPS26AP1 Gene

Content
Loading form....