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Aliases for VPS25P1 Gene

Aliases for VPS25P1 Gene

  • VPS25 Pseudogene 1 2 3 5
  • Vacuolar Protein Sorting 25 Homolog (S. Cerevisiae) Pseudogene 1 2

External Ids for VPS25P1 Gene

Previous GeneCards Identifiers for VPS25P1 Gene

  • GC01P118094

Summaries for VPS25P1 Gene

GeneCards Summary for VPS25P1 Gene

VPS25P1 (VPS25 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VPS25P1 Gene

Genomics for VPS25P1 Gene

Regulatory Elements for VPS25P1 Gene

Enhancers for VPS25P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F116877 0.9 FANTOM5 Ensembl ENCODE 16.2 -670.8 -670788 3.3 HDGF PKNOX1 YBX1 FEZF1 ZNF2 ZNF302 ZNF416 ZNF548 ZNF263 MCM3 ATP1A1-AS1 ENSG00000237993 NEFHP1 LINC01525 VPS25P1 MAN1A2 ENSG00000271427 PTGFRN CD2 CD101
GH01F116823 1.2 Ensembl ENCODE 16.2 -723.2 -723217 4.9 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 ZNF2 YY1 SLC30A9 ENSG00000237993 ATP1A1-AS1 NEFHP1 LINC01525 VPS25P1 MAN1A2 IGSF3 CD2 PTGFRN MIR320B1
GH01F117535 0.6 Ensembl ENCODE 0.4 -14.1 -14115 0.6 HDGF CBX3 ARNT KLF17 NFXL1 RAD21 ZNF366 FOS ZNF263 SMARCA5 FAM46C LOC100996263 ENSG00000212266 GC01P117527 VPS25P1
GH01F117537 1.2 Ensembl ENCODE 0.4 -11.8 -11760 0.5 CTCF ZFHX2 KLF9 REST RAD21 ZKSCAN1 MAN1A2 FAM46C LOC100996263 ENSG00000212266 GC01P117527 VPS25P1
GH01F117561 0.8 ENCODE 0.4 +13.5 13470 1.8 RFX1 ATF3 RAD21 ZKSCAN1 FAM46C LOC100996263 ENSG00000212266 VPS25P1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around VPS25P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for VPS25P1 Gene

Chromosome:
1
Start:
117,549,415 bp from pter
End:
117,549,922 bp from pter
Size:
508 bases
Orientation:
Plus strand

Genomic View for VPS25P1 Gene

Genes around VPS25P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VPS25P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VPS25P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VPS25P1 Gene

Proteins for VPS25P1 Gene

Post-translational modifications for VPS25P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VPS25P1 Gene

Domains & Families for VPS25P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VPS25P1 Gene

Function for VPS25P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VPS25P1 Gene

Localization for VPS25P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VPS25P1 Gene

Pathways & Interactions for VPS25P1 Gene

SuperPathways for VPS25P1 Gene

No Data Available

Interacting Proteins for VPS25P1 Gene

Gene Ontology (GO) - Biological Process for VPS25P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VPS25P1 Gene

Transcripts for VPS25P1 Gene

mRNA/cDNA for VPS25P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VPS25P1 Gene

No ASD Table

Relevant External Links for VPS25P1 Gene

GeneLoc Exon Structure for
VPS25P1
ECgene alternative splicing isoforms for
VPS25P1

Expression for VPS25P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for VPS25P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of VPS25P1 Gene:

VPS25P1
genes like me logo Genes that share expression patterns with VPS25P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for VPS25P1 Gene

Orthologs for VPS25P1 Gene

Evolution for VPS25P1 Gene

ENSEMBL:
Gene Tree for VPS25P1 (if available)
TreeFam:
Gene Tree for VPS25P1 (if available)

No data available for Orthologs for VPS25P1 Gene

Paralogs for VPS25P1 Gene

No data available for Paralogs for VPS25P1 Gene

Variants for VPS25P1 Gene

Relevant External Links for VPS25P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VPS25P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VPS25P1 Gene

Disorders for VPS25P1 Gene

No disorders were found for VPS25P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for VPS25P1 Gene

Publications for VPS25P1 Gene

No publications were found for VPS25P1 Gene.

Products for VPS25P1 Gene

Sources for VPS25P1 Gene

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