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Aliases for VPS13A-AS1 Gene

Subcategory (RNA class) for VPS13A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VPS13A-AS1 Gene

  • VPS13A Antisense RNA 1 2 3 5
  • VPS13A Antisense RNA 1 (Non-Protein Coding) 2

External Ids for VPS13A-AS1 Gene

Previous GeneCards Identifiers for VPS13A-AS1 Gene

  • GC09M079794
  • GC09M079795

Summaries for VPS13A-AS1 Gene

GeneCards Summary for VPS13A-AS1 Gene

VPS13A-AS1 (VPS13A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VPS13A-AS1 Gene

Genomics for VPS13A-AS1 Gene

Regulatory Elements for VPS13A-AS1 Gene

Enhancers for VPS13A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F077176 1 ENCODE 0.8 +0.1 67 3.4 HDGF ATF1 PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF48 ZNF2 VPS13A VPS13A-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around VPS13A-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for VPS13A-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001306182 -207 3200 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF48 ZNF2 GLIS2

Genomic Location for VPS13A-AS1 Gene

Chromosome:
9
Start:
77,176,756 bp from pter
End:
77,177,994 bp from pter
Size:
1,239 bases
Orientation:
Minus strand

Genomic View for VPS13A-AS1 Gene

Genes around VPS13A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VPS13A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VPS13A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VPS13A-AS1 Gene

Proteins for VPS13A-AS1 Gene

Post-translational modifications for VPS13A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VPS13A-AS1 Gene

Domains & Families for VPS13A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VPS13A-AS1 Gene

Function for VPS13A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VPS13A-AS1 Gene

Localization for VPS13A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VPS13A-AS1 Gene

Pathways & Interactions for VPS13A-AS1 Gene

SuperPathways for VPS13A-AS1 Gene

No Data Available

Interacting Proteins for VPS13A-AS1 Gene

Gene Ontology (GO) - Biological Process for VPS13A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VPS13A-AS1 Gene

Transcripts for VPS13A-AS1 Gene

mRNA/cDNA for VPS13A-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VPS13A-AS1 Gene

VPS13A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VPS13A-AS1 Gene

No ASD Table

Relevant External Links for VPS13A-AS1 Gene

GeneLoc Exon Structure for
VPS13A-AS1
ECgene alternative splicing isoforms for
VPS13A-AS1

Expression for VPS13A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for VPS13A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VPS13A-AS1 Gene

This gene is overexpressed in Testis (x34.6).

SOURCE GeneReport for Unigene cluster for VPS13A-AS1 Gene:

Hs.662256
genes like me logo Genes that share expression patterns with VPS13A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for VPS13A-AS1 Gene

Orthologs for VPS13A-AS1 Gene

Evolution for VPS13A-AS1 Gene

ENSEMBL:
Gene Tree for VPS13A-AS1 (if available)
TreeFam:
Gene Tree for VPS13A-AS1 (if available)

No data available for Orthologs for VPS13A-AS1 Gene

Paralogs for VPS13A-AS1 Gene

No data available for Paralogs for VPS13A-AS1 Gene

Variants for VPS13A-AS1 Gene

Sequence variations from dbSNP and Humsavar for VPS13A-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1054368 -- 77,176,877(-) GAGTT(A/G)GAGTC nc-transcript-variant, upstream-variant-2KB
rs10781423 -- 77,178,497(+) TGTGT(A/C)ACATT intron-variant, upstream-variant-2KB
rs10869905 -- 77,179,429(+) TTGCA(A/G)TGTTG intron-variant, upstream-variant-2KB
rs111325535 -- 77,178,001(+) ATATT(G/T)TGGGG intron-variant, upstream-variant-2KB
rs11145319 -- 77,178,293(+) TGACC(C/G)GGGAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for VPS13A-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv7682n100 CNV gain 25217958

Relevant External Links for VPS13A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VPS13A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VPS13A-AS1 Gene

Disorders for VPS13A-AS1 Gene

Relevant External Links for VPS13A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VPS13A-AS1

No disorders were found for VPS13A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VPS13A-AS1 Gene

Publications for VPS13A-AS1 Gene

No publications were found for VPS13A-AS1 Gene.

Products for VPS13A-AS1 Gene

Sources for VPS13A-AS1 Gene

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