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Aliases for VPS13A-AS1 Gene

Subcategory (RNA class) for VPS13A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for VPS13A-AS1 Gene

  • VPS13A Antisense RNA 1 2 3 5
  • VPS13A Antisense RNA 1 (Non-Protein Coding) 2

External Ids for VPS13A-AS1 Gene

Previous GeneCards Identifiers for VPS13A-AS1 Gene

  • GC09M079794
  • GC09M079795

Summaries for VPS13A-AS1 Gene

GeneCards Summary for VPS13A-AS1 Gene

VPS13A-AS1 (VPS13A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for VPS13A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VPS13A-AS1 Gene

Genomics for VPS13A-AS1 Gene

GeneHancer (GH) Regulatory Elements for VPS13A-AS1 Gene

Promoters and enhancers for VPS13A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I077176 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 +0.1 67 3.4 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 VPS13A PIR35220 VPS13A-AS1
GH09I077179 Enhancer 0.4 Ensembl 0.8 -2.3 -2307 1 PRDM6 IKZF1 VPS13A VPS13A-AS1 GC09P077185
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around VPS13A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for VPS13A-AS1 Gene

Genomic Locations for VPS13A-AS1 Gene
chr9:77,176,756-77,177,994
(GRCh38/hg38)
Size:
1,239 bases
Orientation:
Minus strand
chr9:79,791,672-79,792,910
(GRCh37/hg19)

Genomic View for VPS13A-AS1 Gene

Genes around VPS13A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VPS13A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VPS13A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VPS13A-AS1 Gene

Proteins for VPS13A-AS1 Gene

Post-translational modifications for VPS13A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for VPS13A-AS1 Gene

Domains & Families for VPS13A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VPS13A-AS1 Gene

Function for VPS13A-AS1 Gene

Phenotypes From GWAS Catalog for VPS13A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VPS13A-AS1 Gene

Localization for VPS13A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VPS13A-AS1 Gene

Pathways & Interactions for VPS13A-AS1 Gene

SuperPathways for VPS13A-AS1 Gene

No Data Available

Interacting Proteins for VPS13A-AS1 Gene

Gene Ontology (GO) - Biological Process for VPS13A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VPS13A-AS1 Gene

Drugs & Compounds for VPS13A-AS1 Gene

No Compound Related Data Available

Transcripts for VPS13A-AS1 Gene

mRNA/cDNA for VPS13A-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VPS13A-AS1 Gene

VPS13A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for VPS13A-AS1 Gene

No ASD Table

Relevant External Links for VPS13A-AS1 Gene

GeneLoc Exon Structure for
VPS13A-AS1
ECgene alternative splicing isoforms for
VPS13A-AS1

Expression for VPS13A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VPS13A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for VPS13A-AS1 Gene

This gene is overexpressed in Testis (x34.6).

SOURCE GeneReport for Unigene cluster for VPS13A-AS1 Gene:

Hs.662256
genes like me logo Genes that share expression patterns with VPS13A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VPS13A-AS1 Gene

Orthologs for VPS13A-AS1 Gene

Evolution for VPS13A-AS1 Gene

ENSEMBL:
Gene Tree for VPS13A-AS1 (if available)
TreeFam:
Gene Tree for VPS13A-AS1 (if available)

No data available for Orthologs for VPS13A-AS1 Gene

Paralogs for VPS13A-AS1 Gene

No data available for Paralogs for VPS13A-AS1 Gene

Variants for VPS13A-AS1 Gene

Sequence variations from dbSNP and Humsavar for VPS13A-AS1 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1057515644 uncertain-significance, Choreoacanthocytosis 77,177,547(-) G/C intron_variant
rs117488726 likely-benign, Choreoacanthocytosis 77,177,524(-) G/A intron_variant
rs12349389 likely-benign, Choreoacanthocytosis 77,177,522(-) G/A/C intron_variant
rs545092496 uncertain-significance, Choreoacanthocytosis 77,177,473(-) G/C/T intron_variant
rs555695029 uncertain-significance, Choreoacanthocytosis 77,177,557(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for VPS13A-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv7682n100 CNV gain 25217958

Additional Variant Information for VPS13A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VPS13A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for VPS13A-AS1 Gene

Disorders for VPS13A-AS1 Gene

Additional Disease Information for VPS13A-AS1

No disorders were found for VPS13A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VPS13A-AS1 Gene

Publications for VPS13A-AS1 Gene

No publications were found for VPS13A-AS1 Gene.

Products for VPS13A-AS1 Gene

Sources for VPS13A-AS1 Gene

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