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Aliases for VN1R42P Gene

Subcategory (RNA class) for VN1R42P Gene

lncRNA

Aliases for VN1R42P Gene

  • Vomeronasal 1 Receptor 42 Pseudogene 2 3 5

External Ids for VN1R42P Gene

ORGUL Members for VN1R42P Gene

Previous GeneCards Identifiers for VN1R42P Gene

  • GC00U923239
  • GC07U902835
  • GC07P060773
  • GC07P064394

Summaries for VN1R42P Gene

GeneCards Summary for VN1R42P Gene

VN1R42P (Vomeronasal 1 Receptor 42 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for VN1R42P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VN1R42P Gene

Genomics for VN1R42P Gene

GeneHancer (GH) Regulatory Elements for VN1R42P Gene

Promoters and enhancers for VN1R42P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I064902 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.3 -29.8 -29829 2.3 HDGF PKNOX1 ATF1 SMAD1 ARID4B SIN3A DMAP1 ZNF48 YY1 ETS1 ZNF273 EEF1DP4 ZNF117 GTF2IP14 LOC441239 VN1R42P
GH07I064893 Enhancer 0.9 dbSUPER 0.3 -41.6 -41575 0.2 HDAC1 PKNOX1 RB1 ARNT CHAMP1 NCOA2 TCF12 FOS CEBPB NCOA1 LOC441239 EEF1DP4 ZNF273 VN1R42P
GH07I064894 Enhancer 0.8 dbSUPER 0.3 -41.3 -41254 0.2 HDAC1 PKNOX1 RB1 ARNT CHAMP1 NCOA2 TCF12 ZNF766 CEBPB NCOA1 LOC441239 EEF1DP4 ZNF680 ZNF273 VN1R42P
GH07I064892 Enhancer 0.7 dbSUPER 0.3 -41.9 -41885 0.3 CTBP1 ZNF766 ZNF316 MTA3 FOS NFE2 ZNF639 SOX6 L3MBTL2 CBFA2T3 LOC441239 EEF1DP4 ZNF117 ZNF273 VN1R42P
GH07I064904 Enhancer 0.7 Ensembl 0.3 -28.0 -27972 1 HDAC1 PKNOX1 YBX1 RARA CHAMP1 CC2D1A ZBTB48 EGR1 ARID2 NR2F6 EEF1DP4 ZNF273 LOC441239 VN1R42P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around VN1R42P on UCSC Golden Path with GeneCards custom track

Genomic Locations for VN1R42P Gene

Genomic Locations for VN1R42P Gene
chr7:64,933,273-64,933,751
(GRCh38/hg38)
Size:
479 bases
Orientation:
Plus strand
chr7:64,393,651-64,394,129
(GRCh37/hg19)

Genomic View for VN1R42P Gene

Genes around VN1R42P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VN1R42P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VN1R42P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VN1R42P Gene

Proteins for VN1R42P Gene

Post-translational modifications for VN1R42P Gene

No Post-translational modifications

No data available for DME Specific Peptides for VN1R42P Gene

Domains & Families for VN1R42P Gene

Gene Families for VN1R42P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with VN1R42P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for VN1R42P Gene

Function for VN1R42P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VN1R42P Gene

Localization for VN1R42P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VN1R42P Gene

Pathways & Interactions for VN1R42P Gene

SuperPathways for VN1R42P Gene

No Data Available

Interacting Proteins for VN1R42P Gene

Gene Ontology (GO) - Biological Process for VN1R42P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VN1R42P Gene

Drugs & Compounds for VN1R42P Gene

No Compound Related Data Available

Transcripts for VN1R42P Gene

mRNA/cDNA for VN1R42P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for VN1R42P Gene

No ASD Table

Relevant External Links for VN1R42P Gene

GeneLoc Exon Structure for
VN1R42P
ECgene alternative splicing isoforms for
VN1R42P

Expression for VN1R42P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VN1R42P Gene

mRNA differential expression in normal tissues according to GTEx for VN1R42P Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.3) and Brain - Cerebellum (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of VN1R42P Gene:

VN1R42P
genes like me logo Genes that share expression patterns with VN1R42P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VN1R42P Gene

Orthologs for VN1R42P Gene

Evolution for VN1R42P Gene

ENSEMBL:
Gene Tree for VN1R42P (if available)
TreeFam:
Gene Tree for VN1R42P (if available)

No data available for Orthologs for VN1R42P Gene

Paralogs for VN1R42P Gene

No data available for Paralogs for VN1R42P Gene

Variants for VN1R42P Gene

Additional Variant Information for VN1R42P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VN1R42P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VN1R42P Gene

Disorders for VN1R42P Gene

No disorders were found for VN1R42P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for VN1R42P Gene

Publications for VN1R42P Gene

  1. Extreme variability among mammalian V1R gene families. (PMID: 19952141) Young JM … Trask BJ (Genome research 2010) 3 58

Products for VN1R42P Gene

Sources for VN1R42P Gene

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