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VN1R4 Gene

protein-coding GIFtS: 42
GCID: GC19M053770

Vomeronasal 1 Receptor 4

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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
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Aliases
Vomeronasal 1 Receptor 4¹ ²		V1r-Like Receptor 4² ³
V1RL4² ³		Pheromone Receptor²
G-Protein Coupled Receptor GPCR27² ³		V1R-Like 4²
hGPCR27² ³		Vomeronasal Type-1 Receptor 4²

External Ids:	HGNC: 19871¹	Entrez Gene: 317703²	Ensembl: ENSG00000228567⁷	UniProtKB: Q7Z5H5³

Export aliases for VN1R4 gene to outside databases

Previous GC identifers: GC19M054131 GC19M058446 GC19M058461 GC19M050090

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for VN1R4 Gene:

VN1R4 (vomeronasal 1 receptor 4) is a protein-coding gene. GO annotations related to this gene include pheromone receptor activity. An important paralog of this gene is VN1R2.

UniProtKB/Swiss-Prot: VN1R4_HUMAN, Q7Z5H5

Function: Putative pheromone receptor

Gene Wiki entry for VN1R4 Gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:

NC_000019.9 NC_018930.2 NT_011109.17

Regulatory elements:

Regulatory transcription factor binding sites in the VN1R4 gene promoter:
POU2F1 POU2F1a Pax-4a
Other transcription factors

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Search Chromatin IP Primers for VN1R4

Epigenetics:

DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat VN1R4

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.42 Ensembl cytogenetic band: 19q13.42 HGNC cytogenetic band: 19q13.42

VN1R4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
VN1R4 gene location

GeneLoc information about chromosome 19 GeneLoc Exon Structure

GeneLoc location for GC19M053770: view genomic region (about GC identifiers)

Start:	53,769,929 bp from pter	End:	53,770,972 bp from pter
Size:	1,044 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, ²neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
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UniProtKB/Swiss-Prot: VN1R4_HUMAN, Q7Z5H5 (See protein sequence)

Recommended Name: Vomeronasal type-1 receptor 4

Size: 301 amino acids; 33557 Da

Miscellaneous: The chimpanzee and gorilla orthologous proteins do not exist, their genes are pseudogenes

Secondary accessions: Q2M3E2 Q7Z5H6 Q7Z5H7 Q8TDU2

Explore the universe of human proteins at neXtProt for VN1R4: NX_Q7Z5H5

Explore proteomics data for VN1R4 at MOPED

Post-translational modifications:

Glycosylation² at Asn154, Asn157

See VN1R4 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_776256.2

ENSEMBL proteins:

ENSP00000310856

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:

VN1R: Vomeronasal receptors / Type 1

VN1RU: GPCR / Unclassified : Vomeronasal receptors, type 1

2 InterPro protein domains:

IPR017452 GPCR_Rhodpsn_7TM

IPR004072 Vmron_rcpt_1

Graphical View of Domain Structure for InterPro Entry Q7Z5H5

ProtoNet protein and cluster: Q7Z5H5

1 Blocks protein domain: IPB004072 Vomeronasal type 1 receptor family signature

UniProtKB/Swiss-Prot: VN1R4_HUMAN, Q7Z5H5

Similarity: Belongs to the G-protein coupled receptor 1 family

Find genes that share domains with VN1R4 About GenesLikeMe

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

UniProtKB/Swiss-Prot Summary: VN1R4_HUMAN, Q7Z5H5

Function: Putative pheromone receptor

Gene Ontology (GO): 2 molecular function terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0004930	G-protein coupled receptor activity	--	--
GO:0016503	pheromone receptor activity	IEA	--

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Phenotypes:
1 GenomeRNAi human phenotype for VN1R4:

Actin fiber cells

Animal Models:

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot

VN1R4_HUMAN, Q7Z5H5: Cell membrane; Multi-pass membrane protein

Subcellular locations from COMPARTMENTS:

Compartment	Confidence
plasma membrane	5
cytoskeleton	4

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Gene Ontology (GO): 4 cellular component terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005737	cytoplasm	--	--
GO:0005886	plasma membrane	IEA	--
GO:0015629	actin cytoskeleton	--	--
GO:0016021	integral component of membrane	IEA	--

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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

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Gene Ontology (GO): 3 biological process terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007186	G-protein coupled receptor signaling pathway	--	--
GO:0019236	response to pheromone	IEA	--
GO:0050909	sensory perception of taste	--	--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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REFSEQ mRNAs for VN1R4 gene:

NM_173857.2

Unigene Cluster for VN1R4:

Vomeronasal 1 receptor 4

Hs.553685

Unigene Representative Sequence: BC104939

1 Ensembl transcript including schematic representation, and UCSC links where relevant:

ENST00000311170(uc010ydu.2)

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Additional mRNA sequence:

BC104935.1 BC104939.1

1 DOTS entry:

DT.99953625

1 AceView cDNA sequence:

NM_173857

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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VN1R4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: AGCTGTGACC

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VN1R4 Protein expression data from MOPED¹, PaxDb² and MaxQB³:

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VN1R4 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.553685

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for VN1R4 gene from Selected species (see all 5) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Vmn1r237^{1 , 5}	vomeronasal 1 receptor 237^{1, 5}	66.55(n)¹ 54.32(a)¹		17 (11.40 cM)⁵ 171234¹ NM_134200.1¹ NP_598961.1¹ 21313963⁵

ENSEMBL Gene Tree for VN1R4 (if available)
TreeFam Gene Tree for VN1R4 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for VN1R4 gene

VN1R2² VN1R1²

5 SIMAP similar genes for VN1R4 using alignment to 1 protein entry: VN1R4_HUMAN:

VN1R2 VN1R3 VN1R1 FKSG83 VN1R17P

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Selected Pseudogenes.org Pseudogenes for VN1R4 (see all 40)
PGOHUM00000239872 PGOHUM00000248196 PGOHUM00000248813 PGOHUM00000248814 PGOHUM00000248849

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Polymorphic Variants from UniProtKB/Swiss-Prot

VN1R4_HUMAN, Q7Z5H5: Various VN1R4 alleles are known. The sequence shown is that of allele VN1R4*1

SNP ID	Valid	Clinical significance	Chr 19 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs144810859^1,2		--	53769542(+)	`GCAACC/TTCATT`	1	--	ds500¹		0	--	--	--	--
rs148163097^1,2		--	53769606(+)	`GCTACG/TTGTCA`	1	--	ds500¹		0	--	--	--	--
rs186978157^1,2		--	53769630(+)	`ACAATA/CTCACG`	1	--	ds500¹		0	--	--	--	--
rs112428673^1,2		--	53769634(+)	`TCTCAC/TGCTTA`	1	--	ds500¹		0	--	--	--	--
rs182220621^1,2		--	53769738(+)	`TTAATC/TGCGTA`	1	--	ds500¹		0	--	--	--	--
rs10412309^1,2	C,F,A,H	--	53769741(+)	`ATTGCG/ATAGAC`	1	--	ds500¹		13		NS EA NA CSA WA	1424
rs16984664^1,2	C,F,H	--	53769861(+)	`TTGGGG/ATGGAA`	1	--	ds500¹		22		NA NS EA WA CSA	2480
rs57086064^1,2	C	--	53769898(+)	`CTCATA/GATTGG`	1	--	ds500¹		4		WA NA EA	360
rs80041332^1,2	C	--	53769903(+)	`AATTGG/TGAGAG`	1	--	ds500¹		4		WA NA EA	360
rs57683214^1,2	C,F	--	53769906(+)	`TGGGAG/CAGGTT`	1	--	ds500¹		5		WA CSA NA EA	362

HapMap Linkage Disequilibrium report for VN1R4 (53769929 - 53770972 bp)

Structural Variations
Database of Genomic Variants (DGV) 3 variations for VN1R4: About this table

Variant ID	Type	Subtype	PubMed ID
esv2718787	CNV	Deletion	23290073
esv2718812	CNV	Deletion	23290073
nsv912342	CNV	Gain	21882294

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for VN1R4 gene integrated from 10 sources:
(articles sorted by number of sources associating them with VN1R4)

Utopia: connect your pdf to the dynamic
world of online information

Novel human vomeronasal receptor-like genes reveal species-specific families. (PubMed id 12123587)^{1, 2, 3} Rodriguez I. and Mombaerts P. (Curr. Biol. 2002)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S.... Malek J. (Genome Res. 2004)
Evolutionary deterioration of the vomeronasal pheromone transduction pathway in catarrhine primates. (PubMed id 12826614)^{1, 2} Zhang J. and Webb D.M. (Proc. Natl. Acad. Sci. U.S.A. 2003)
Identification of G protein-coupled receptor genes from the human genome sequence. (PubMed id 12044878)^{1, 2} Takeda S.... Mitaku S. (FEBS Lett. 2002)
Extreme variability among mammalian V1R gene families. (PubMed id 19952141)¹ Young J.M....Trask B.J. (Genome Res. 2010)
Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)¹ Barbe L....Andersson-Svahn H. (amp 2008)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 317703	HGNC: 19871	AceView: VN1R4	Ensembl:ENSG00000228567	euGenes: HUgn317703
ECgene: VN1R4	H-InvDB: VN1R4

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for VN1R4	Pharmacogenomics, SNPs, Pathways
Protein Spotlight	http://web.expasy.org/spotlight/back_issues/061

Intellectual Property for VN1R4 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for VN1R4 gene:
Search GeneIP for patents involving VN1R4

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 2 Nov 2014 , 8 Jan 2015

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VN1R4 Gene

Vomeronasal 1 Receptor 4

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VN1R4 Gene

Vomeronasal 1 Receptor 4

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