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Aliases for VN1R3 Gene

Subcategory (RNA class) for VN1R3 Gene

lncRNA

Aliases for VN1R3 Gene

  • Vomeronasal 1 Receptor 3 (Gene/Pseudogene) 2 3 5
  • Vomeronasal 1 Receptor 3 Pseudogene 2 3
  • V1r-Like Receptor 3 3 4
  • V1RL3 3 4
  • Vomeronasal 1 Receptor 4 Pseudogene 3
  • Vomeronasal Type-1 Receptor 3 3
  • Vomeronasal 1 Receptor 3 2
  • V1RL3 Pseudogene 3
  • V1R-Like 3 3
  • FKSG46 3
  • V1RL3p 3

External Ids for VN1R3 Gene

ORGUL Members for VN1R3 Gene

Previous GeneCards Identifiers for VN1R3 Gene

  • GC16M032315
  • GC16M031815
  • GC16M031855
  • GC16M031856
  • GC16M031726
  • GC16M029379

Summaries for VN1R3 Gene

GeneCards Summary for VN1R3 Gene

VN1R3 (Vomeronasal 1 Receptor 3 (Gene/Pseudogene)) is a Protein Coding gene, and is affiliated with the lncRNA class. GO annotations related to this gene include pheromone receptor activity.

UniProtKB/Swiss-Prot for VN1R3 Gene

  • Putative pheromone receptor.

Gene Wiki entry for VN1R3 Gene

Additional gene information for VN1R3 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VN1R3 Gene

Genomics for VN1R3 Gene

Regulatory Elements for VN1R3 Gene

Enhancers for VN1R3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H031116 1.7 FANTOM5 ENCODE dbSUPER 14.6 +690.4 690434 3 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 SETD1A SRCAP KAT8 STX4 ENSG00000261614 ITGAX NPIPB13 ZNF720 ZNF747 SMG1P5
GH16H031071 1.4 ENCODE dbSUPER 14.6 +735.2 735206 4 MLX ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SP3 NFYC ZNF610 SETD1A ZNF785 SRCAP KAT8 ZNF720 FBRS ZNF688 ZNF764 ZNF689 RNF40
GH16H030956 1.4 ENCODE dbSUPER 14.6 +851.0 850955 3 FEZF1 DMAP1 YY1 ZNF143 ZNF548 SP3 NFYC MEF2D SSRP1 ZNF610 SETD1A SRCAP INO80E ENSG00000260267 ZNF764 ZNF747 SMG1P5 ENSG00000260304 BCL7C KAT8
GH16H031093 1.2 ENCODE 14.6 +714.3 714255 3 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SETD1A FUS ZNF785 ZNF720 ZNF747 SRCAP ZNF689 ZNF764 C16orf58 ENSG00000260267
GH16H031031 1.2 ENCODE 14.6 +775.6 775554 2 MLX DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZFP41 MEF2D ZNF610 ZNF785 FUS TGFB1I1 ENSG00000260267 SMG1P5 SRCAP SETD1A HSD3B7 NPIPB13 ZNF747
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around VN1R3 on UCSC Golden Path with GeneCards custom track

Genomic Location for VN1R3 Gene

Chromosome:
16
Start:
31,807,590 bp from pter
End:
31,808,846 bp from pter
Size:
1,257 bases
Orientation:
Minus strand

Genomic View for VN1R3 Gene

Genes around VN1R3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VN1R3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VN1R3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VN1R3 Gene

Proteins for VN1R3 Gene

  • Protein details for VN1R3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BXE9-VN1R3_HUMAN
    Recommended name:
    Vomeronasal type-1 receptor 3
    Protein Accession:
    Q9BXE9

    Protein attributes for VN1R3 Gene

    Size:
    311 amino acids
    Molecular mass:
    34713 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • The gorilla and orangutan orthologous proteins do not exist, their genes are pseudogenes.

neXtProt entry for VN1R3 Gene

Post-translational modifications for VN1R3 Gene

Other Protein References for VN1R3 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for VN1R3 Gene

Domains & Families for VN1R3 Gene

Gene Families for VN1R3 Gene

Protein Domains for VN1R3 Gene

Suggested Antigen Peptide Sequences for VN1R3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BXE9

UniProtKB/Swiss-Prot:

VN1R3_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with VN1R3: view

Function for VN1R3 Gene

Molecular function for VN1R3 Gene

UniProtKB/Swiss-Prot Function:
Putative pheromone receptor.

Phenotypes From GWAS Catalog for VN1R3 Gene

Gene Ontology (GO) - Molecular Function for VN1R3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016503 pheromone receptor activity IEA --
genes like me logo Genes that share ontologies with VN1R3: view

Phenotypes for VN1R3 Gene

GenomeRNAi human phenotypes for VN1R3:
genes like me logo Genes that share phenotypes with VN1R3: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for VN1R3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VN1R3 Gene

Localization for VN1R3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for VN1R3 Gene

Cell membrane; Multi-pass membrane protein.

Gene Ontology (GO) - Cellular Components for VN1R3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with VN1R3: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for VN1R3 Gene

Pathways & Interactions for VN1R3 Gene

SuperPathways for VN1R3 Gene

No Data Available

Interacting Proteins for VN1R3 Gene

Gene Ontology (GO) - Biological Process for VN1R3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IEA --
GO:0007606 sensory perception of chemical stimulus IBA --
GO:0019236 response to pheromone IEA --
genes like me logo Genes that share ontologies with VN1R3: view

No data available for Pathways by source and SIGNOR curated interactions for VN1R3 Gene

Drugs & Compounds for VN1R3 Gene

No Compound Related Data Available

Transcripts for VN1R3 Gene

mRNA/cDNA for VN1R3 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for VN1R3 Gene

Vomeronasal 1 receptor 3 (gene/pseudogene):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for VN1R3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for VN1R3 Gene

No ASD Table

Relevant External Links for VN1R3 Gene

GeneLoc Exon Structure for
VN1R3
ECgene alternative splicing isoforms for
VN1R3

Expression for VN1R3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VN1R3 Gene

NURSA nuclear receptor signaling pathways regulating expression of VN1R3 Gene:

VN1R3

SOURCE GeneReport for Unigene cluster for VN1R3 Gene:

Hs.257746
genes like me logo Genes that share expression patterns with VN1R3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VN1R3 Gene

Orthologs for VN1R3 Gene

Evolution for VN1R3 Gene

ENSEMBL:
Gene Tree for VN1R3 (if available)
TreeFam:
Gene Tree for VN1R3 (if available)

No data available for Orthologs for VN1R3 Gene

Paralogs for VN1R3 Gene

(6) SIMAP similar genes for VN1R3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with VN1R3: view

No data available for Paralogs for VN1R3 Gene

Variants for VN1R3 Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for VN1R3 Gene

VN1R3_HUMAN-Q9BXE9
There seems to be a deletion in the gene coding for this protein in about 98% of the population.

Relevant External Links for VN1R3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VN1R3

No data available for Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VN1R3 Gene

Disorders for VN1R3 Gene

Relevant External Links for VN1R3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VN1R3

No disorders were found for VN1R3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VN1R3 Gene

Publications for VN1R3 Gene

  1. Evolutionary deterioration of the vomeronasal pheromone transduction pathway in catarrhine primates. (PMID: 12826614) Zhang J … Webb DM (Proceedings of the National Academy of Sciences of the United States of America 2003) 3 4 60
  2. Novel human vomeronasal receptor-like genes reveal species-specific families. (PMID: 12123587) Rodriguez I … Mombaerts P (Current biology : CB 2002) 3 4 60
  3. Extreme variability among mammalian V1R gene families. (PMID: 19952141) Young JM … Trask BJ (Genome research 2010) 3 60
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for VN1R3 Gene

Sources for VN1R3 Gene

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