Free for academic non-profit institutions. Other users need a Commercial license

Aliases for VN1R2 Gene

Aliases for VN1R2 Gene

  • Vomeronasal 1 Receptor 2 2 3 5
  • G-Protein Coupled Receptor GPCR25 3 4
  • V1r-Like Receptor 2 3 4
  • HGPCR25 3 4
  • V1RL2 3 4
  • Vomeronasal Type-1 Receptor 2 3
  • Pheromone Receptor 3
  • V1R-Like 2 3

External Ids for VN1R2 Gene

Previous GeneCards Identifiers for VN1R2 Gene

  • GC19M054122
  • GC19P058437
  • GC19P058454
  • GC19P058455
  • GC19P058457
  • GC19P053760
  • GC19P050082

Summaries for VN1R2 Gene

GeneCards Summary for VN1R2 Gene

VN1R2 (Vomeronasal 1 Receptor 2) is a Protein Coding gene. GO annotations related to this gene include G-protein coupled receptor activity and pheromone receptor activity. An important paralog of this gene is VN1R4.

UniProtKB/Swiss-Prot for VN1R2 Gene

  • Putative pheromone receptor.

Gene Wiki entry for VN1R2 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VN1R2 Gene

Genomics for VN1R2 Gene

Regulatory Elements for VN1R2 Gene

Enhancers for VN1R2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G052941 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10 -313.8 -313800 6.1 HDGF PKNOX1 FOXA2 MLX ARID4B DMAP1 ZNF263 SP3 SP5 KAT8 ZNF816 ZNF160 VN1R2 ZNF677 ZNF665 ZNF761 ZNF347 ZNF415 ZNF83 ZNF701
GH19G053364 1.1 ENCODE 10.3 +107.4 107399 1.6 HDGF HNRNPUL1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZBTB7B ZNF207 KLF13 ZNF525 ZNF808 ZNF845 ENSG00000268970 ZNF137P ZNF765 ZNF816 ENSG00000269825 ENSG00000269001 ZNF813
GH19G053004 1 ENCODE 10.7 -253.7 -253652 1.1 PKNOX1 FOXA2 MLX ARID4B DMAP1 ZNF48 FOS SP5 NFYC MXD4 VN1R2 ZNF677 ZNF702P LOC204800 ENSG00000267943
GH19G053308 0.6 ENCODE 11.4 +50.3 50291 0.2 CTCF ZNF654 HDAC2 SUZ12 KDM1A RAD21 ETS1 FAM90A27P VN1R2 ZNF677 ZNF347 FAM90A28P BIRC8
GH19G053127 0.6 ENCODE dbSUPER 10.3 -130.6 -130556 1.2 CEBPA ZNF160 ZNF347 ZNF677 VN1R2 ZNF415 LOC105372454
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around VN1R2 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the VN1R2 gene promoter:

Genomic Location for VN1R2 Gene

Chromosome:
19
Start:
53,258,292 bp from pter
End:
53,261,837 bp from pter
Size:
3,546 bases
Orientation:
Plus strand

Genomic View for VN1R2 Gene

Genes around VN1R2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VN1R2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VN1R2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VN1R2 Gene

Proteins for VN1R2 Gene

  • Protein details for VN1R2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NFZ6-VN1R2_HUMAN
    Recommended name:
    Vomeronasal type-1 receptor 2
    Protein Accession:
    Q8NFZ6
    Secondary Accessions:
    • A1L411
    • Q8TDU4

    Protein attributes for VN1R2 Gene

    Size:
    395 amino acids
    Molecular mass:
    44476 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • The chimpanzee, gorilla and orangutan orthologous proteins do not exist, their genes are pseudogenes.

neXtProt entry for VN1R2 Gene

Post-translational modifications for VN1R2 Gene

  • Glycosylation at isoforms=239 and Asn343

Other Protein References for VN1R2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for VN1R2 Gene

Domains & Families for VN1R2 Gene

Gene Families for VN1R2 Gene

Protein Domains for VN1R2 Gene

Suggested Antigen Peptide Sequences for VN1R2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NFZ6

UniProtKB/Swiss-Prot:

VN1R2_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with VN1R2: view

Function for VN1R2 Gene

Molecular function for VN1R2 Gene

UniProtKB/Swiss-Prot Function:
Putative pheromone receptor.

Gene Ontology (GO) - Molecular Function for VN1R2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0016503 pheromone receptor activity IEA --
genes like me logo Genes that share ontologies with VN1R2: view
genes like me logo Genes that share phenotypes with VN1R2: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VN1R2 Gene

Localization for VN1R2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for VN1R2 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for VN1R2 gene
Compartment Confidence
plasma membrane 5
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for VN1R2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with VN1R2: view

Pathways & Interactions for VN1R2 Gene

SuperPathways for VN1R2 Gene

No Data Available

Interacting Proteins for VN1R2 Gene

Gene Ontology (GO) - Biological Process for VN1R2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IEA --
GO:0007606 sensory perception of chemical stimulus IBA --
GO:0019236 response to pheromone IEA --
genes like me logo Genes that share ontologies with VN1R2: view

No data available for Pathways by source and SIGNOR curated interactions for VN1R2 Gene

Transcripts for VN1R2 Gene

mRNA/cDNA for VN1R2 Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for VN1R2 Gene

No ASD Table

Relevant External Links for VN1R2 Gene

GeneLoc Exon Structure for
VN1R2
ECgene alternative splicing isoforms for
VN1R2

Expression for VN1R2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VN1R2 Gene

mRNA differential expression in normal tissues according to GTEx for VN1R2 Gene

This gene is overexpressed in Testis (x19.9).

Protein differential expression in normal tissues from HIPED for VN1R2 Gene

This gene is overexpressed in Adipocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for VN1R2 Gene



Protein tissue co-expression partners for VN1R2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of VN1R2 Gene:

VN1R2

SOURCE GeneReport for Unigene cluster for VN1R2 Gene:

Hs.553684
genes like me logo Genes that share expression patterns with VN1R2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VN1R2 Gene

Orthologs for VN1R2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for VN1R2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia VN1R2 34 35
  • 98.72 (n)
dog
(Canis familiaris)
Mammalia LOC100856009 34
  • 77.55 (n)
mouse
(Mus musculus)
Mammalia Vmn1r224 34 16
  • 63.13 (n)
Vmn1r237 35
  • 44 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia -- 35
  • 49 (a)
ManyToMany
Species where no ortholog for VN1R2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for VN1R2 Gene

ENSEMBL:
Gene Tree for VN1R2 (if available)
TreeFam:
Gene Tree for VN1R2 (if available)

Paralogs for VN1R2 Gene

Variants for VN1R2 Gene

Sequence variations from dbSNP and Humsavar for VN1R2 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1001102139 -- 53,258,397(+) ACCCT(A/G)CCCCT reference, missense
rs1001471363 -- 53,258,190(+) GTACA(A/C)CTGGC upstream-variant-2KB
rs1001969843 -- 53,259,820(+) AATGT(A/G)TAGAT downstream-variant-500B
rs1003568617 -- 53,256,702(+) ATAAA(A/T)ATATA upstream-variant-2KB
rs1003597805 -- 53,257,077(+) GTGCG(-/TGTA)TGTAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for VN1R2 Gene

Variant ID Type Subtype PubMed ID
dgv3645n100 CNV gain 25217958
esv2718787 CNV deletion 23290073
esv2718812 CNV deletion 23290073
esv3644741 CNV gain 21293372
nsv1055236 CNV gain 25217958
nsv1078889 OTHER inversion 25765185
nsv1141887 OTHER inversion 24896259

Variation tolerance for VN1R2 Gene

Residual Variation Intolerance Score: 80.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.61; 72.54% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for VN1R2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VN1R2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for VN1R2 Gene

Disorders for VN1R2 Gene

Relevant External Links for VN1R2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VN1R2

No disorders were found for VN1R2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VN1R2 Gene

Publications for VN1R2 Gene

  1. Novel human vomeronasal receptor-like genes reveal species-specific families. (PMID: 12123587) Rodriguez I. … Mombaerts P. (Curr. Biol. 2002) 2 3 4 64
  2. Evolutionary deterioration of the vomeronasal pheromone transduction pathway in catarrhine primates. (PMID: 12826614) Zhang J. … Webb D.M. (Proc. Natl. Acad. Sci. U.S.A. 2003) 3 4 64
  3. Identification of G protein-coupled receptor genes from the human genome sequence. (PMID: 12044878) Takeda S. … Mitaku S. (FEBS Lett. 2002) 3 4 64
  4. Extreme variability among mammalian V1R gene families. (PMID: 19952141) Young J.M. … Trask B.J. (Genome Res. 2010) 3 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for VN1R2 Gene

Sources for VN1R2 Gene

Content
Loading form....