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Aliases for VN1R10P Gene

Subcategory (RNA class) for VN1R10P Gene

lncRNA

Aliases for VN1R10P Gene

  • Vomeronasal 1 Receptor 10 Pseudogene 2 3 5
  • Vomeronasal Olfactory Receptor, (Chromosome 6) Subtype I, Member 1 Pseudogene 2 3
  • Vomeronasal 1 Receptor 1 Pseudogene 3
  • B24o18.2 3
  • Hs6V1-1p 3
  • VNR6I1P 3
  • FKSG83 3

External Ids for VN1R10P Gene

ORGUL Members for VN1R10P Gene

Previous HGNC Symbols for VN1R10P Gene

  • VNR6I1P

Previous GeneCards Identifiers for VN1R10P Gene

  • GC00U914056
  • GC06U900683
  • GC06P027292
  • GC06P027100

Summaries for VN1R10P Gene

GeneCards Summary for VN1R10P Gene

VN1R10P (Vomeronasal 1 Receptor 10 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for VN1R10P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VN1R10P Gene

Genomics for VN1R10P Gene

GeneHancer (GH) Regulatory Elements for VN1R10P Gene

Promoters and enhancers for VN1R10P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I027687 Enhancer 1.6 FANTOM5 Ensembl ENCODE 4 +363.2 363221 2 MLX IRF4 ZNF213 E2F8 ZNF143 SP3 NFYC MEF2D SSRP1 RCOR2 TRI-AAT2-1 ZKSCAN8 ZSCAN23 ZKSCAN3 ZSCAN12 LINC00240 ZSCAN31 ENSG00000261839 ZNF603P ZNF391
GH06I027293 Enhancer 1.4 FANTOM5 Ensembl ENCODE 4.3 -30.8 -30785 0.8 ARNT ZNF2 NCOA2 GTF3C2 ZNF213 E2F8 ARID2 FOS ATF7 RUNX3 TRQ-CTG5-1 TRS-ACT1-1 GC06P027299 LOC102724851 BTN3A2 ZNF391 ZNF322 ZKSCAN8 RNU6-471P VN1R10P
GH06I027176 Enhancer 1.6 FANTOM5 Ensembl ENCODE 1.7 -147.1 -147148 3.2 HDGF PKNOX1 SMAD1 ARNT SIN3A ZNF2 YY1 ZNF213 E2F8 ZNF143 TRI-AAT5-2 BTN3A2 ZKSCAN8 BTN2A2 ABT1 BTN2A1 ZNF204P HMGN4 ZNF391 HIST1H2BK
GH06I027312 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 0.4 -12.1 -12103 0.9 ELF3 PKNOX1 ARID4B SIN3A ZNF2 KLF5 ZNF48 RAD21 SLC30A9 ZNF335 LOC105375107 POM121L2 BTN2A2 ZNF391 ZSCAN9 ZKSCAN8 ABT1 ZKSCAN4 BTN2A3P LOC102724851
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around VN1R10P on UCSC Golden Path with GeneCards custom track

Genomic Locations for VN1R10P Gene

Genomic Locations for VN1R10P Gene
chr6:27,324,761-27,325,963
(GRCh38/hg38)
Size:
1,203 bases
Orientation:
Plus strand
chr6:27,292,578-27,293,742
(GRCh37/hg19)

Genomic View for VN1R10P Gene

Genes around VN1R10P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VN1R10P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VN1R10P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VN1R10P Gene

Proteins for VN1R10P Gene

Post-translational modifications for VN1R10P Gene

No Post-translational modifications

No data available for DME Specific Peptides for VN1R10P Gene

Domains & Families for VN1R10P Gene

Gene Families for VN1R10P Gene

Suggested Antigen Peptide Sequences for VN1R10P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with VN1R10P: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for VN1R10P Gene

Function for VN1R10P Gene

Phenotypes From GWAS Catalog for VN1R10P Gene

genes like me logo Genes that share phenotypes with VN1R10P: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VN1R10P Gene

Localization for VN1R10P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for VN1R10P Gene

Pathways & Interactions for VN1R10P Gene

SuperPathways for VN1R10P Gene

No Data Available

Interacting Proteins for VN1R10P Gene

Gene Ontology (GO) - Biological Process for VN1R10P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VN1R10P Gene

Drugs & Compounds for VN1R10P Gene

No Compound Related Data Available

Transcripts for VN1R10P Gene

mRNA/cDNA for VN1R10P Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for VN1R10P Gene

No ASD Table

Relevant External Links for VN1R10P Gene

GeneLoc Exon Structure for
VN1R10P
ECgene alternative splicing isoforms for
VN1R10P

Expression for VN1R10P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VN1R10P Gene

mRNA differential expression in normal tissues according to GTEx for VN1R10P Gene

This gene is overexpressed in Testis (x30.0).

NURSA nuclear receptor signaling pathways regulating expression of VN1R10P Gene:

VN1R10P

SOURCE GeneReport for Unigene cluster for VN1R10P Gene:

Hs.326753
genes like me logo Genes that share expression patterns with VN1R10P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VN1R10P Gene

Orthologs for VN1R10P Gene

Evolution for VN1R10P Gene

ENSEMBL:
Gene Tree for VN1R10P (if available)
TreeFam:
Gene Tree for VN1R10P (if available)

No data available for Orthologs for VN1R10P Gene

Paralogs for VN1R10P Gene

No data available for Paralogs for VN1R10P Gene

Variants for VN1R10P Gene

Sequence variations from dbSNP and Humsavar for VN1R10P Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1001724865 -- 27,324,769(+) G/A non_coding_transcript_variant
rs1002507270 -- 27,324,093(+) T/G upstream_transcript_variant
rs1002832507 -- 27,326,129(+) A/G downstream_transcript_variant
rs1003167184 -- 27,323,729(+) G/C upstream_transcript_variant
rs1003506157 -- 27,325,881(+) T/G non_coding_transcript_variant

Additional Variant Information for VN1R10P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VN1R10P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VN1R10P Gene

Disorders for VN1R10P Gene

Additional Disease Information for VN1R10P

No disorders were found for VN1R10P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VN1R10P Gene

Publications for VN1R10P Gene

  1. The palmitoyl acyltransferase HIP14 shares a high proportion of interactors with huntingtin: implications for a role in the pathogenesis of Huntington's disease. (PMID: 24705354) Butland SL … Hayden MR (Human molecular genetics 2014) 3 58
  2. Extreme variability among mammalian V1R gene families. (PMID: 19952141) Young JM … Trask BJ (Genome research 2010) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for VN1R10P Gene

Sources for VN1R10P Gene

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