Free for academic non-profit institutions. Other users need a Commercial license

Aliases for VN1R10P Gene

Subcategory (RNA class) for VN1R10P Gene

lncRNA

Aliases for VN1R10P Gene

  • Vomeronasal 1 Receptor 10 Pseudogene 2 3 5
  • Vomeronasal Olfactory Receptor, (Chromosome 6) Subtype I, Member 1 Pseudogene 2 3
  • Vomeronasal 1 Receptor 1 Pseudogene 3
  • B24o18.2 3
  • Hs6V1-1p 3
  • VNR6I1P 3
  • FKSG83 3

External Ids for VN1R10P Gene

ORGUL Members for VN1R10P Gene

Previous HGNC Symbols for VN1R10P Gene

  • VNR6I1P

Previous GeneCards Identifiers for VN1R10P Gene

  • GC00U914056
  • GC06U900683
  • GC06P027292
  • GC06P027100

Summaries for VN1R10P Gene

GeneCards Summary for VN1R10P Gene

VN1R10P (Vomeronasal 1 Receptor 10 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for VN1R10P Gene

Genomics for VN1R10P Gene

Regulatory Elements for VN1R10P Gene

Enhancers for VN1R10P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G027687 1.7 FANTOM5 Ensembl ENCODE 4 +363.2 363221 2.0 MLX CREB3L1 ZNF143 ZNF263 SP3 NFYC TBX21 MEF2D SSRP1 RCOR2 ZNF391 ZSCAN26 ZKSCAN3 ZNF603P ZKSCAN4 ZKSCAN8 RNU6-471P ZSCAN31 VN1R10P ZNF184
GH06G027293 1.5 FANTOM5 Ensembl ENCODE 4.3 -30.8 -30785 0.8 ARNT ZNF2 GTF3C2 FOS ZNF592 NBN HMBOX1 KDM1A PRDM4 SP7 ABT1 BTN3A2 ZNF391 ZKSCAN4 ZKSCAN8 RNU6-471P LOC102724851 VN1R10P TRS-ACT1-1 GC06P027299
GH06G027176 1.8 FANTOM5 Ensembl ENCODE 1.7 -147.1 -147149 3.2 AGO1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 SSRP1 ZNF610 RCOR2 ABT1 BTN3A2 ZKSCAN8 ZNF204P ZNF391 HIST1H2BK ENSG00000261353 ZNF192P1 POM121L2 ZNF603P
GH06G027312 1.3 Ensembl ENCODE 0.4 -12.1 -12104 0.9 PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF143 FOS ZNF391 BTN2A2 LOC102724851 POM121L2 VN1R10P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around VN1R10P on UCSC Golden Path with GeneCards custom track

Genomic Location for VN1R10P Gene

Chromosome:
6
Start:
27,324,761 bp from pter
End:
27,325,963 bp from pter
Size:
1,203 bases
Orientation:
Plus strand

Genomic View for VN1R10P Gene

Genes around VN1R10P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
VN1R10P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for VN1R10P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for VN1R10P Gene

Proteins for VN1R10P Gene

Post-translational modifications for VN1R10P Gene

No Post-translational modifications

No data available for DME Specific Peptides for VN1R10P Gene

Domains & Families for VN1R10P Gene

Gene Families for VN1R10P Gene

Suggested Antigen Peptide Sequences for VN1R10P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with VN1R10P: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for VN1R10P Gene

Function for VN1R10P Gene

genes like me logo Genes that share phenotypes with VN1R10P: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for VN1R10P Gene

Localization for VN1R10P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for VN1R10P Gene

Pathways & Interactions for VN1R10P Gene

SuperPathways for VN1R10P Gene

No Data Available

Interacting Proteins for VN1R10P Gene

Gene Ontology (GO) - Biological Process for VN1R10P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for VN1R10P Gene

Drugs & Compounds for VN1R10P Gene

No Compound Related Data Available

Transcripts for VN1R10P Gene

mRNA/cDNA for VN1R10P Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for VN1R10P Gene

No ASD Table

Relevant External Links for VN1R10P Gene

GeneLoc Exon Structure for
VN1R10P
ECgene alternative splicing isoforms for
VN1R10P

Expression for VN1R10P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for VN1R10P Gene

mRNA differential expression in normal tissues according to GTEx for VN1R10P Gene

This gene is overexpressed in Testis (x30.0).

NURSA nuclear receptor signaling pathways regulating expression of VN1R10P Gene:

VN1R10P

SOURCE GeneReport for Unigene cluster for VN1R10P Gene:

Hs.326753
genes like me logo Genes that share expression patterns with VN1R10P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for VN1R10P Gene

Orthologs for VN1R10P Gene

Evolution for VN1R10P Gene

ENSEMBL:
Gene Tree for VN1R10P (if available)
TreeFam:
Gene Tree for VN1R10P (if available)

No data available for Orthologs for VN1R10P Gene

Paralogs for VN1R10P Gene

No data available for Paralogs for VN1R10P Gene

Variants for VN1R10P Gene

Sequence variations from dbSNP and Humsavar for VN1R10P Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1001724865 -- 27,324,769(+) TGATT(A/G)CTAAA nc-transcript-variant
rs1002507270 -- 27,324,093(+) ATCTG(G/T)TAAAT upstream-variant-2KB
rs1002832507 -- 27,326,129(+) AATCT(A/G)TGAAA downstream-variant-500B
rs1003167184 -- 27,323,729(+) AGATG(C/G)GCTCT upstream-variant-2KB
rs1003506157 -- 27,325,881(+) GTCCT(G/T)TGGCC nc-transcript-variant

Relevant External Links for VN1R10P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
VN1R10P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for VN1R10P Gene

Disorders for VN1R10P Gene

Relevant External Links for VN1R10P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
VN1R10P

No disorders were found for VN1R10P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for VN1R10P Gene

Publications for VN1R10P Gene

  1. The palmitoyl acyltransferase HIP14 shares a high proportion of interactors with huntingtin: implications for a role in the pathogenesis of Huntington's disease. (PMID: 24705354) Butland S.L. … Hayden M.R. (Hum. Mol. Genet. 2014) 3 64
  2. Extreme variability among mammalian V1R gene families. (PMID: 19952141) Young J.M. … Trask B.J. (Genome Res. 2010) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  4. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for VN1R10P Gene

Sources for VN1R10P Gene

Content
Loading form....